Wall clock time and date at job start Tue Mar 31 2020 03:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39720 * 120.19001 * 246.50519 * 3 2 1 5 5 C 1.37816 * 119.89778 * 180.02562 * 4 3 2 6 6 C 1.38515 * 120.29817 * 359.97438 * 5 4 3 7 7 C 1.38106 * 120.39445 * 0.02562 * 6 5 4 8 8 C 1.38646 * 120.08725 * 0.02562 * 7 6 5 9 9 O 1.35716 * 120.14777 * 180.02562 * 8 7 6 10 10 C 1.42900 * 116.99837 * 359.95108 * 9 8 7 11 11 C 1.50703 * 109.47033 * 180.02562 * 10 9 8 12 12 O 1.21282 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99974 * 179.97438 * 11 10 9 14 14 C 1.46489 * 119.99803 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47221 * 180.02562 * 14 13 11 16 16 O 1.21299 * 120.00034 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00337 * 180.02562 * 15 14 13 18 18 C 1.37105 * 120.00158 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99480 * 359.97438 * 18 17 15 20 20 C 1.38952 * 120.00022 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00022 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99794 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47459 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46835 * 119.99896 * 22 20 18 25 25 H 1.48501 * 109.47146 * 239.99583 * 22 20 18 26 26 H 1.07996 * 120.05118 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.85446 * 180.02562 * 5 4 3 28 28 H 1.07997 * 119.80515 * 179.74693 * 6 5 4 29 29 H 1.07996 * 119.95728 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47109 * 300.00170 * 10 9 8 31 31 H 1.09000 * 109.46972 * 60.00231 * 10 9 8 32 32 H 0.97004 * 119.99882 * 0.02562 * 13 11 10 33 33 H 1.09007 * 109.47435 * 299.99925 * 14 13 11 34 34 H 1.09000 * 109.47518 * 60.00073 * 14 13 11 35 35 H 0.96995 * 120.00188 * 359.97438 * 17 15 14 36 36 H 0.96993 * 119.99850 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 0.4824 1.1076 5 6 4.6486 0.4807 1.1009 6 6 5.3415 0.0028 0.0008 7 6 4.6596 -0.4762 -1.1004 8 6 3.2732 -0.4810 -1.1115 9 8 2.6018 -0.9520 -2.1928 10 6 3.3874 -1.4276 -3.2876 11 6 2.4767 -1.9066 -4.3887 12 8 1.2734 -1.8461 -4.2496 13 7 2.9995 -2.4012 -5.5282 14 6 2.1142 -2.8663 -6.5987 15 6 2.9427 -3.3679 -7.7533 16 8 4.1536 -3.3393 -7.6885 17 7 2.3382 -3.8475 -8.8583 18 6 3.0919 -4.3034 -9.9089 19 1 4.1700 -4.2779 -9.8511 20 6 2.4686 -4.7973 -11.0484 21 7 1.1568 -4.8279 -11.1188 22 14 3.4956 -5.4178 -12.4800 23 1 4.9373 -5.2755 -12.1535 24 1 3.1830 -6.8478 -12.7303 25 1 3.1829 -4.6229 -13.6948 26 1 2.7342 0.8556 1.9675 27 1 5.1908 0.8529 1.9576 28 1 6.4215 0.0090 0.0025 29 1 5.2069 -0.8468 -1.9545 30 1 4.0157 -0.6194 -3.6621 31 1 4.0170 -2.2516 -2.9521 32 1 3.9619 -2.4491 -5.6395 33 1 1.4855 -3.6745 -6.2249 34 1 1.4849 -2.0417 -6.9338 35 1 1.3699 -3.8701 -8.9104 36 1 0.7218 -5.1730 -11.9141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343555140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:22 Heat of formation + Delta-G solvation = -51.031286 kcal Electronic energy + Delta-G solvation = -22416.658959 eV Core-core repulsion = 18673.690538 eV Total energy + Delta-G solvation = -3742.968422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89265 -39.60975 -38.33072 -37.63552 -36.47677 -34.57803 -33.79734 -31.92471 -31.46424 -30.84779 -29.37564 -27.01288 -24.55390 -24.27365 -22.74392 -20.57795 -19.73226 -19.62608 -18.28537 -18.02803 -17.44420 -16.74674 -16.31475 -15.71244 -15.50319 -15.24235 -15.18953 -14.77213 -14.52894 -14.24571 -14.14373 -13.61476 -13.59157 -13.35219 -13.02568 -12.89820 -12.63101 -12.29294 -12.04795 -12.03749 -11.69293 -11.58749 -11.49256 -11.18694 -10.45512 -10.37942 -9.90711 -9.70840 -9.50378 -8.99543 -8.73439 -8.72254 -8.16777 -6.57174 -3.99615 0.38720 0.87385 2.23658 2.54542 2.58644 2.70357 3.06119 3.18990 3.25039 3.44921 3.52866 3.65180 3.66072 4.05784 4.30536 4.37721 4.55799 4.70802 4.74157 4.76708 4.78432 4.83123 4.98286 5.11225 5.28782 5.66289 5.74429 5.80019 5.85650 5.92656 5.97406 6.13455 6.46627 6.76996 7.40741 7.41170 7.56903 7.85338 8.21079 8.37911 8.98333 9.32277 9.79283 10.59582 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.034179 B = 0.002225 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.017913 B =12580.601211 C =13379.171968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.258 3.742 3 C -0.060 4.060 4 C -0.032 4.032 5 C -0.161 4.161 6 C -0.048 4.048 7 C -0.212 4.212 8 C 0.179 3.821 9 O -0.282 6.282 10 C 0.040 3.960 11 C 0.512 3.488 12 O -0.523 6.523 13 N -0.701 5.701 14 C 0.110 3.890 15 C 0.427 3.573 16 O -0.599 6.599 17 N -0.547 5.547 18 C -0.306 4.306 19 H 0.107 0.893 20 C 0.026 3.974 21 N -0.893 5.893 22 Si 0.934 3.066 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.413 0.587 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.396 0.604 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.267 9.229 21.239 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.058 4.058 3 C -0.064 4.064 4 C -0.053 4.053 5 C -0.179 4.179 6 C -0.066 4.066 7 C -0.231 4.231 8 C 0.129 3.871 9 O -0.193 6.193 10 C -0.038 4.038 11 C 0.295 3.705 12 O -0.398 6.398 13 N -0.357 5.357 14 C -0.017 4.017 15 C 0.212 3.788 16 O -0.486 6.486 17 N -0.181 5.181 18 C -0.435 4.435 19 H 0.125 0.875 20 C -0.177 4.177 21 N -0.533 5.533 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.157 0.843 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.159 0.841 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.251 0.749 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.073 9.184 21.132 24.102 hybrid contribution 0.939 -0.451 -1.042 1.474 sum 8.013 8.733 20.090 23.325 Atomic orbital electron populations 1.81233 1.11958 1.08366 1.07066 1.25298 0.92314 0.94052 0.94109 1.15312 0.84834 1.10764 0.95465 1.21049 0.94300 0.94445 0.95483 1.21014 0.93490 1.03722 0.99693 1.21216 1.00539 0.93078 0.91802 1.21296 0.92016 1.07916 1.01873 1.19022 0.90616 0.91407 0.86034 1.86173 1.34551 1.75065 1.23481 1.22600 0.93780 1.01164 0.86283 1.19825 0.88959 0.78822 0.82853 1.90781 1.14844 1.54280 1.79897 1.45479 1.11887 1.63190 1.15189 1.20993 0.92638 1.00551 0.87497 1.19671 0.88547 0.85713 0.84834 1.90495 1.13982 1.62212 1.81875 1.41808 1.09765 1.53091 1.13470 1.19782 0.92911 1.37915 0.92914 0.87548 1.25354 0.95992 0.97161 0.99241 1.69620 1.08000 1.45478 1.30158 0.85742 0.79823 0.78302 0.80127 1.19100 1.20566 1.20573 0.84260 0.84711 0.84758 0.84081 0.88143 0.88138 0.74934 0.89564 0.89557 0.76978 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.35 18.54 41.84 0.78 -5.58 16 2 C 0.26 3.29 14.87 -22.47 -0.33 2.96 16 3 C -0.06 -0.56 5.75 -106.69 -0.61 -1.18 16 4 C -0.03 -0.20 9.76 -39.18 -0.38 -0.58 16 5 C -0.16 -0.72 10.02 -39.63 -0.40 -1.12 16 6 C -0.05 -0.22 10.03 -39.53 -0.40 -0.62 16 7 C -0.21 -1.35 9.03 -39.48 -0.36 -1.71 16 8 C 0.18 1.71 6.69 -38.71 -0.26 1.45 16 9 O -0.28 -3.50 9.10 -38.76 -0.35 -3.86 16 10 C 0.04 0.40 5.22 36.01 0.19 0.59 16 11 C 0.51 7.54 7.91 -10.98 -0.09 7.45 16 12 O -0.52 -10.07 16.50 -14.36 -0.24 -10.30 16 13 N -0.70 -10.55 5.53 -61.48 -0.34 -10.89 16 14 C 0.11 1.94 6.15 -5.20 -0.03 1.91 16 15 C 0.43 9.37 7.85 -10.99 -0.09 9.28 16 16 O -0.60 -14.56 15.24 5.54 0.08 -14.48 16 17 N -0.55 -13.21 5.29 -10.96 -0.06 -13.26 16 18 C -0.31 -8.12 9.68 -14.93 -0.14 -8.26 16 19 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 20 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.89 -23.51 13.05 55.50 0.72 -22.79 16 22 Si 0.93 20.13 29.55 -169.99 -5.02 15.11 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 26 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 27 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 28 H 0.13 0.29 8.06 -52.49 -0.42 -0.13 16 29 H 0.14 0.62 6.30 -52.49 -0.33 0.29 16 30 H 0.10 0.70 7.66 -51.93 -0.40 0.30 16 31 H 0.10 0.70 7.66 -51.93 -0.40 0.30 16 32 H 0.41 5.73 7.44 -40.82 -0.30 5.43 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.40 9.25 7.90 -40.82 -0.32 8.92 16 36 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -34.72 335.46 -5.74 -40.47 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -3.38 Total: 9.78 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -3.00 Total: 10.74 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 1.10 Total: -52.52 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.51 Total: -28.64 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.72 -5.74 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343555140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.564 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds