Wall clock time and date at job start Tue Mar 31 2020 04:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 117.00065 * 2 1 4 4 O 1.20829 * 120.00265 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00095 * 180.02562 * 3 2 1 6 6 N 1.46492 * 109.47297 * 179.97438 * 5 3 2 7 7 C 1.36826 * 120.00327 * 287.16128 * 6 5 3 8 8 H 1.07998 * 119.99716 * 41.06059 * 7 6 5 9 9 C 1.39066 * 120.00382 * 221.07373 * 7 6 5 10 10 N 1.31358 * 119.99641 * 22.25593 * 9 7 6 11 11 Si 1.86798 * 120.00115 * 202.26893 * 9 7 6 12 12 H 1.48500 * 109.46893 * 359.97438 * 11 9 7 13 13 H 1.48489 * 109.47385 * 119.99316 * 11 9 7 14 14 H 1.48501 * 109.46756 * 239.99469 * 11 9 7 15 15 C 1.34781 * 120.00086 * 107.15881 * 6 5 3 16 16 O 1.21651 * 119.99792 * 186.87975 * 15 6 5 17 17 C 1.47324 * 120.00126 * 6.87979 * 15 6 5 18 18 C 1.39108 * 120.29906 * 325.86816 * 17 15 6 19 19 C 1.38457 * 120.35118 * 179.97438 * 18 17 15 20 20 C 1.37864 * 120.80379 * 359.97438 * 19 18 17 21 21 C 1.39220 * 120.20995 * 359.95728 * 20 19 18 22 22 N 1.37214 * 133.64030 * 179.69897 * 21 20 19 23 23 H 0.97000 * 125.98597 * 0.02562 * 22 21 20 24 24 N 1.40034 * 108.03133 * 179.97438 * 22 21 20 25 25 C 1.30279 * 109.69421 * 0.34252 * 24 22 21 26 26 C 1.40669 * 119.79965 * 0.02562 * 21 20 19 27 27 H 1.09001 * 109.47150 * 300.01089 * 1 2 3 28 28 H 1.09002 * 109.46929 * 60.00506 * 1 2 3 29 29 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47141 * 59.99155 * 5 3 2 31 31 H 1.09008 * 109.46740 * 299.99374 * 5 3 2 32 32 H 0.97001 * 119.99276 * 184.94632 * 10 9 7 33 33 H 1.07997 * 119.81934 * 359.97236 * 18 17 15 34 34 H 1.08001 * 119.59846 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.89230 * 179.97438 * 20 19 18 36 36 H 1.08003 * 125.64638 * 179.81566 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 3.8401 3.4346 -1.1334 8 1 2.9482 3.3428 -1.7355 9 6 4.8445 4.3200 -1.5091 10 7 6.0719 4.1429 -1.0757 11 14 4.4484 5.7610 -2.6296 12 1 3.0043 5.7369 -2.9752 13 1 4.7699 7.0325 -1.9333 14 1 5.2560 5.6588 -3.8716 15 6 4.5035 3.2285 1.1139 16 8 4.7320 4.4227 1.1543 17 6 4.7970 2.3823 2.2836 18 6 3.9855 1.2929 2.5831 19 6 4.2607 0.4966 3.6818 20 6 5.3396 0.7662 4.4966 21 6 6.1714 1.8484 4.2224 22 7 7.2880 2.3628 4.8318 23 1 7.7131 2.0137 5.6308 24 7 7.7070 3.4792 4.0977 25 6 6.9039 3.6683 3.0895 26 6 5.9079 2.6685 3.1103 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.9558 0.7808 -0.8907 31 1 3.9564 0.7806 0.8893 32 1 6.7570 4.7990 -1.2783 33 1 3.1363 1.0672 1.9552 34 1 3.6223 -0.3459 3.9033 35 1 5.5404 0.1355 5.3501 36 1 6.9869 4.4589 2.3584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348797762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:39 Heat of formation + Delta-G solvation = 19.022810 kcal Electronic energy + Delta-G solvation = -25111.416664 eV Core-core repulsion = 21371.486016 eV Total energy + Delta-G solvation = -3739.930648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18653 -40.11666 -38.49815 -36.47109 -35.99213 -34.24519 -32.52761 -31.70382 -29.62846 -29.35635 -28.53622 -26.42793 -25.09890 -22.97361 -22.15056 -21.39908 -20.87078 -19.74730 -17.71619 -17.14110 -16.96285 -16.78519 -15.94859 -15.85207 -15.21984 -14.91206 -14.74010 -14.56439 -14.16729 -13.91596 -13.44570 -13.27012 -13.05663 -12.75036 -12.34768 -12.07804 -11.75687 -11.58940 -11.48976 -11.27969 -10.89714 -10.69012 -10.62924 -10.51465 -10.41216 -10.19818 -10.00978 -9.84226 -8.90151 -8.38951 -8.30121 -7.66353 -7.39002 -6.26029 -3.93709 0.98893 1.66264 2.71242 2.90062 2.99045 3.02140 3.30316 3.42229 3.44678 3.79456 4.16056 4.53113 4.73699 4.93944 5.08745 5.11799 5.20090 5.26661 5.28356 5.34345 5.41987 5.53089 5.56073 5.68188 5.72796 5.95398 6.04540 6.11610 6.22458 6.51870 6.66202 6.75006 6.82120 7.03374 7.52794 7.57294 7.89100 8.09177 8.30460 8.84259 8.99666 9.45470 10.04095 10.82267 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.010932 B = 0.007631 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.724527 B = 3668.458328 C = 5962.058506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.434 3.566 4 O -0.482 6.482 5 C 0.072 3.928 6 N -0.419 5.419 7 C -0.336 4.336 8 H 0.085 0.915 9 C 0.075 3.925 10 N -0.828 5.828 11 Si 0.911 3.089 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.285 1.285 15 C 0.513 3.487 16 O -0.523 6.523 17 C -0.007 4.007 18 C -0.174 4.174 19 C -0.066 4.066 20 C -0.150 4.150 21 C 0.124 3.876 22 N -0.517 5.517 23 H 0.436 0.564 24 N -0.270 5.270 25 C 0.110 3.890 26 C -0.138 4.138 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.268 0.732 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 -11.489 7.688 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.286 6.286 3 C 0.274 3.726 4 O -0.366 6.366 5 C -0.054 4.054 6 N -0.139 5.139 7 C -0.462 4.462 8 H 0.103 0.897 9 C -0.136 4.136 10 N -0.461 5.461 11 Si 0.738 3.262 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.212 1.212 15 C 0.302 3.698 16 O -0.401 6.401 17 C -0.014 4.014 18 C -0.194 4.194 19 C -0.087 4.087 20 C -0.172 4.172 21 C 0.007 3.993 22 N -0.232 5.232 23 H 0.280 0.720 24 N -0.084 5.084 25 C -0.085 4.085 26 C -0.147 4.147 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.153 0.847 32 H 0.078 0.922 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.154 -10.036 8.245 13.166 hybrid contribution -0.887 0.166 -0.547 1.056 sum -3.041 -9.870 7.697 12.880 Atomic orbital electron populations 1.23144 0.77579 1.02877 1.02307 1.86532 1.22574 1.34541 1.84973 1.25082 0.93321 0.81191 0.73024 1.90690 1.66674 1.36123 1.43096 1.22120 0.86208 0.89863 1.07175 1.42860 1.55361 1.05617 1.10104 1.19093 1.02498 1.22365 1.02212 0.89746 1.25177 0.93459 0.98778 0.96230 1.69877 1.00553 1.32761 1.42902 0.86168 0.78733 0.82343 0.79000 1.19401 1.20372 1.21183 1.17633 0.83729 0.87228 0.81185 1.90621 1.53853 1.14736 1.80902 1.20109 0.92492 0.93643 0.95173 1.21532 1.02030 0.96503 0.99341 1.20838 0.95799 0.98703 0.93336 1.19984 0.96902 0.97713 1.02637 1.18844 0.90189 0.96147 0.94115 1.46027 1.24472 1.25654 1.27020 0.71981 1.76776 1.22360 1.02331 1.06968 1.24174 0.90522 0.98359 0.95479 1.18692 0.99249 0.98827 0.97898 0.92303 0.92252 0.88680 0.87552 0.84655 0.92172 0.84548 0.85115 0.85919 0.78214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.55 10.57 -39.25 -0.41 -5.96 16 3 C 0.43 8.12 6.56 36.01 0.24 8.35 16 4 O -0.48 -10.80 15.37 -18.75 -0.29 -11.08 16 5 C 0.07 1.39 5.51 -5.20 -0.03 1.36 16 6 N -0.42 -10.36 2.25 -117.36 -0.26 -10.62 16 7 C -0.34 -9.15 8.54 -15.02 -0.13 -9.28 16 8 H 0.08 2.32 7.59 -52.49 -0.40 1.92 16 9 C 0.07 2.05 4.25 -17.45 -0.07 1.98 16 10 N -0.83 -23.26 11.97 55.50 0.66 -22.60 16 11 Si 0.91 21.84 29.61 -169.99 -5.03 16.80 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.51 12.99 6.52 -12.56 -0.08 12.91 16 16 O -0.52 -15.03 13.94 5.23 0.07 -14.96 16 17 C -0.01 -0.15 5.56 -104.68 -0.58 -0.73 16 18 C -0.17 -2.90 7.43 -39.18 -0.29 -3.20 16 19 C -0.07 -0.87 9.99 -39.64 -0.40 -1.26 16 20 C -0.15 -1.96 10.06 -39.35 -0.40 -2.36 16 21 C 0.12 2.01 7.32 -84.17 -0.62 1.40 16 22 N -0.52 -7.74 7.45 32.35 0.24 -7.50 16 23 H 0.44 4.71 8.96 -182.65 -1.64 3.07 16 24 N -0.27 -4.88 12.58 30.80 0.39 -4.49 16 25 C 0.11 2.22 11.40 -17.11 -0.20 2.02 16 26 C -0.14 -2.75 5.95 -106.67 -0.64 -3.38 16 27 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 31 H 0.14 2.28 3.54 -55.74 -0.20 2.08 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.14 2.22 4.07 -52.49 -0.21 2.00 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.20 4.25 7.57 -52.48 -0.40 3.86 16 LS Contribution 313.44 15.07 4.72 4.72 Total: -1.00 -34.71 313.44 -6.55 -41.26 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.51 Total: 5.14 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -2.12 Total: 9.28 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 1.03 Total: -45.21 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.63 Total: -32.00 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.71 -6.55 -41.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348797762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.284 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds