Wall clock time and date at job start Tue Mar 31 2020 04:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 117.00160 * 2 1 4 4 O 1.20816 * 119.99935 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99687 * 179.97438 * 3 2 1 6 6 N 1.46508 * 109.47127 * 179.97438 * 5 3 2 7 7 C 1.36961 * 119.99738 * 95.30864 * 6 5 3 8 8 H 1.08005 * 120.00128 * 226.62600 * 7 6 5 9 9 C 1.38969 * 120.00248 * 46.62066 * 7 6 5 10 10 N 1.31424 * 119.99638 * 10.05268 * 9 7 6 11 11 Si 1.86804 * 120.00222 * 190.05731 * 9 7 6 12 12 H 1.48498 * 109.46911 * 60.00057 * 11 9 7 13 13 H 1.48495 * 109.46914 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46898 * 300.00056 * 11 9 7 15 15 C 1.34776 * 120.00174 * 275.31283 * 6 5 3 16 16 O 1.21691 * 119.99809 * 5.65154 * 15 6 5 17 17 C 1.46837 * 119.99815 * 185.65590 * 15 6 5 18 18 C 1.36448 * 126.83604 * 6.66705 * 17 15 6 19 19 N 1.35587 * 109.73407 * 179.88992 * 18 17 15 20 20 H 0.97003 * 124.72431 * 180.15317 * 19 18 17 21 21 C 1.37707 * 110.56229 * 0.39321 * 19 18 17 22 22 N 1.32681 * 132.93332 * 179.76550 * 21 19 18 23 23 C 1.31610 * 121.69214 * 180.02562 * 22 21 19 24 24 C 1.38589 * 121.54171 * 359.97438 * 23 22 21 25 25 C 1.38344 * 119.32071 * 0.03048 * 24 23 22 26 26 C 1.39344 * 118.05988 * 359.95867 * 25 24 23 27 27 H 1.09004 * 109.47094 * 59.99791 * 1 2 3 28 28 H 1.09000 * 109.47710 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47281 * 300.00427 * 1 2 3 30 30 H 1.09002 * 109.47595 * 60.00284 * 5 3 2 31 31 H 1.09002 * 109.47812 * 299.99798 * 5 3 2 32 32 H 0.96998 * 119.99497 * 179.97438 * 10 9 7 33 33 H 1.08004 * 125.13088 * 0.04006 * 18 17 15 34 34 H 1.08000 * 119.22997 * 179.97438 * 23 22 21 35 35 H 1.08003 * 120.33710 * 179.97438 * 24 23 22 36 36 H 1.08000 * 120.96576 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.2808 3.3059 1.1806 8 1 3.8788 4.2866 1.3887 9 6 5.1011 2.6796 2.1112 10 7 5.7479 1.5832 1.7842 11 14 5.2844 3.3958 3.8267 12 1 3.9565 3.4379 4.4900 13 1 6.2085 2.5474 4.6211 14 1 5.8344 4.7720 3.7323 15 6 4.0698 3.3558 -1.1627 16 8 3.7065 2.8328 -2.1997 17 6 4.6041 4.7234 -1.1780 18 6 5.1648 5.3944 -0.1305 19 7 5.5425 6.6337 -0.5301 20 1 5.9668 7.2931 0.0410 21 6 5.2354 6.8281 -1.8583 22 7 5.4006 7.8541 -2.6833 23 6 5.0154 7.7993 -3.9406 24 6 4.4173 6.6652 -4.4668 25 6 4.2192 5.5641 -3.6530 26 6 4.6358 5.6466 -2.3258 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.9564 0.7805 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 6.3208 1.1463 2.4336 33 1 5.2909 4.9972 0.8660 34 1 5.1689 8.6581 -4.5771 35 1 4.1083 6.6416 -5.5014 36 1 3.7561 4.6665 -4.0355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348804968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:04 Heat of formation + Delta-G solvation = -29.995053 kcal Electronic energy + Delta-G solvation = -24686.793179 eV Core-core repulsion = 20944.736957 eV Total energy + Delta-G solvation = -3742.056222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.12101 -39.74398 -38.28690 -37.24143 -35.69743 -34.82213 -32.42710 -31.77884 -29.96204 -29.37478 -28.04153 -26.34703 -25.13417 -23.25677 -22.21366 -21.79897 -20.31040 -19.09737 -18.15205 -17.15167 -16.90723 -16.22105 -15.81466 -15.67482 -15.50368 -15.21740 -14.68627 -14.60806 -14.21579 -13.95383 -13.47999 -12.87516 -12.81676 -12.67602 -12.55212 -12.47597 -11.86550 -11.72322 -11.63845 -11.49027 -11.23752 -11.07300 -10.79836 -10.58133 -10.22157 -9.88922 -9.69984 -9.32661 -9.16205 -8.67222 -8.10263 -7.70074 -7.45703 -6.64092 -4.45582 1.42672 1.71585 2.72958 2.94435 3.05568 3.06812 3.09470 3.19624 3.35428 3.87150 4.19407 4.48657 4.59453 4.86779 4.91240 5.23211 5.37398 5.45852 5.48421 5.52380 5.58097 5.64509 5.93160 5.95406 6.13453 6.18828 6.33241 6.46582 6.67926 6.70283 6.91997 7.01085 7.03912 7.15068 7.38667 7.67227 7.72389 8.07966 8.35564 8.59267 8.79641 9.29985 9.74148 10.38998 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.006027 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.439136 B = 4644.527106 C = 6364.230105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.444 3.556 4 O -0.504 6.504 5 C 0.134 3.866 6 N -0.427 5.427 7 C -0.343 4.343 8 H 0.094 0.906 9 C 0.045 3.955 10 N -0.855 5.855 11 Si 0.915 3.085 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.268 1.268 15 C 0.566 3.434 16 O -0.596 6.596 17 C -0.192 4.192 18 C 0.119 3.881 19 N -0.579 5.579 20 H 0.416 0.584 21 C 0.267 3.733 22 N -0.502 5.502 23 C 0.120 3.880 24 C -0.209 4.209 25 C -0.020 4.020 26 C -0.107 4.107 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.277 0.723 33 H 0.221 0.779 34 H 0.154 0.846 35 H 0.132 0.868 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 3.417 -1.885 4.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.285 3.715 4 O -0.390 6.390 5 C 0.008 3.992 6 N -0.145 5.145 7 C -0.471 4.471 8 H 0.112 0.888 9 C -0.163 4.163 10 N -0.490 5.490 11 Si 0.740 3.260 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.193 1.193 15 C 0.357 3.643 16 O -0.481 6.481 17 C -0.202 4.202 18 C -0.010 4.010 19 N -0.185 5.185 20 H 0.254 0.746 21 C 0.035 3.965 22 N -0.216 5.216 23 C -0.046 4.046 24 C -0.231 4.231 25 C -0.047 4.047 26 C -0.114 4.114 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.156 0.844 32 H 0.088 0.912 33 H 0.237 0.763 34 H 0.171 0.829 35 H 0.149 0.851 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.191 4.079 -1.842 4.632 hybrid contribution -0.369 -0.134 0.930 1.009 sum -1.561 3.946 -0.912 4.340 Atomic orbital electron populations 1.23077 0.78226 1.02539 1.01947 1.86552 1.22134 1.34995 1.85000 1.25425 0.93709 0.80820 0.71505 1.90577 1.67024 1.36420 1.44938 1.20952 0.83865 0.87810 1.06545 1.42688 1.57969 1.08565 1.05327 1.19468 1.28752 1.04332 0.94553 0.88844 1.25639 0.94063 0.96421 1.00144 1.69778 1.25525 1.18102 1.35601 0.86189 0.78840 0.79228 0.81735 1.19376 1.20369 1.19301 1.17329 0.79188 0.84624 0.83121 1.90613 1.54114 1.70461 1.32950 1.19913 1.12204 0.95846 0.92218 1.24268 0.93621 0.81441 1.01694 1.41760 1.53602 1.15370 1.07734 0.74649 1.18483 0.99854 0.91711 0.86479 1.66428 1.21860 1.28830 1.04456 1.22254 0.95185 0.97438 0.89675 1.21820 1.05346 0.94901 1.01020 1.21117 0.94052 0.98314 0.91182 1.19596 1.02841 0.94389 0.94612 0.92542 0.88973 0.92565 0.88372 0.84415 0.91210 0.76347 0.82885 0.85057 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.11 10.57 -39.27 -0.41 -7.53 16 3 C 0.44 10.02 7.99 36.00 0.29 10.30 16 4 O -0.50 -12.65 16.06 -18.74 -0.30 -12.95 16 5 C 0.13 3.09 5.40 -5.19 -0.03 3.06 16 6 N -0.43 -10.43 2.00 -117.51 -0.24 -10.66 16 7 C -0.34 -7.96 6.22 -14.99 -0.09 -8.05 16 8 H 0.09 2.09 6.14 -52.48 -0.32 1.77 16 9 C 0.05 1.01 5.08 -17.46 -0.09 0.92 16 10 N -0.86 -20.02 11.54 55.50 0.64 -19.38 16 11 Si 0.91 17.16 29.57 -169.99 -5.03 12.14 16 12 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 13 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 14 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 15 C 0.57 14.23 7.42 -12.78 -0.09 14.13 16 16 O -0.60 -16.01 16.03 5.20 0.08 -15.93 16 17 C -0.19 -4.31 6.16 -103.37 -0.64 -4.94 16 18 C 0.12 2.28 10.06 -16.54 -0.17 2.11 16 19 N -0.58 -9.69 5.97 -11.94 -0.07 -9.76 16 20 H 0.42 5.40 8.96 -40.82 -0.37 5.03 16 21 C 0.27 5.02 8.41 -155.51 -1.31 3.71 16 22 N -0.50 -8.71 10.39 -12.28 -0.13 -8.84 16 23 C 0.12 1.76 11.15 -17.52 -0.20 1.56 16 24 C -0.21 -3.12 10.11 -39.41 -0.40 -3.51 16 25 C -0.02 -0.38 9.98 -39.13 -0.39 -0.77 16 26 C -0.11 -2.22 6.28 -104.93 -0.66 -2.88 16 27 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.10 2.23 7.67 -51.93 -0.40 1.83 16 31 H 0.14 3.17 5.90 -51.93 -0.31 2.87 16 32 H 0.28 6.13 8.31 -40.82 -0.34 5.79 16 33 H 0.22 4.08 4.87 -52.48 -0.26 3.82 16 34 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 36 H 0.14 2.67 7.58 -52.49 -0.40 2.27 16 LS Contribution 318.19 15.07 4.80 4.80 Total: -1.00 -31.10 318.19 -6.66 -37.76 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -3.29 Total: 13.10 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: -2.70 Total: 17.26 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.21 Total: -48.64 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.63 Total: -36.40 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.10 -6.66 -37.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348804968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.763 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds