Wall clock time and date at job start Tue Mar 31 2020 03:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 110.65681 * 2 1 4 4 C 1.38360 * 119.85197 * 92.64741 * 3 2 1 5 5 C 1.37958 * 120.14696 * 179.76387 * 4 3 2 6 6 C 1.39576 * 119.84808 * 0.50778 * 5 4 3 7 7 C 1.47850 * 120.14295 * 179.72623 * 6 5 4 8 8 N 1.34775 * 119.99765 * 0.02562 * 7 6 5 9 9 O 1.21556 * 119.99839 * 180.02562 * 7 6 5 10 10 C 1.39571 * 119.71497 * 359.74108 * 6 5 4 11 11 C 1.37966 * 119.85523 * 0.02562 * 10 6 5 12 12 N 1.47316 * 110.59240 * 237.08808 * 2 1 3 13 13 C 1.34527 * 106.61904 * 241.24885 * 12 2 1 14 14 O 1.21527 * 123.77113 * 180.20682 * 13 12 2 15 15 N 1.33787 * 112.45795 * 0.38577 * 13 12 2 16 16 C 1.37512 * 124.17848 * 179.85731 * 15 13 12 17 17 H 1.08001 * 120.00037 * 145.33991 * 16 15 13 18 18 C 1.38893 * 120.00115 * 325.34380 * 16 15 13 19 19 N 1.31384 * 120.00018 * 147.41789 * 18 16 15 20 20 Si 1.86799 * 120.00106 * 327.41327 * 18 16 15 21 21 H 1.48506 * 109.46992 * 270.00347 * 20 18 16 22 22 H 1.48490 * 109.47264 * 150.00212 * 20 18 16 23 23 H 1.48501 * 109.46845 * 29.99793 * 20 18 16 24 24 C 1.34769 * 111.64510 * 359.59809 * 15 13 12 25 25 O 1.21236 * 127.16075 * 180.26396 * 24 15 13 26 26 H 1.09002 * 109.46314 * 297.78350 * 1 2 3 27 27 H 1.09000 * 109.47184 * 57.78079 * 1 2 3 28 28 H 1.08998 * 109.47552 * 177.78969 * 1 2 3 29 29 H 1.08002 * 119.92665 * 359.97438 * 4 3 2 30 30 H 1.07990 * 120.07690 * 180.26785 * 5 4 3 31 31 H 0.96998 * 120.00382 * 359.97438 * 8 7 6 32 32 H 0.97009 * 119.99633 * 180.02562 * 8 7 6 33 33 H 1.07999 * 120.07566 * 180.02562 * 10 6 5 34 34 H 1.07998 * 119.92938 * 180.02562 * 11 10 6 35 35 H 0.96999 * 126.68783 * 61.51608 * 12 2 1 36 36 H 0.96995 * 120.00044 * 354.59690 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4101 0.0000 4 6 2.3565 2.0349 1.1987 5 6 2.8480 3.3240 1.2056 6 6 3.0377 4.0015 0.0002 7 6 3.5585 5.3853 0.0003 8 7 3.8515 5.9949 1.1660 9 8 3.7223 5.9731 -1.0511 10 6 2.7335 3.3673 -1.2053 11 6 2.2471 2.0762 -1.1984 12 7 2.0482 -0.7493 -1.1577 13 6 2.7639 -1.7753 -0.6629 14 8 3.3367 -2.5947 -1.3539 15 7 2.7715 -1.7950 0.6748 16 6 3.4259 -2.7399 1.4297 17 1 3.8761 -2.4617 2.3712 18 6 3.5079 -4.0519 0.9815 19 7 4.5647 -4.7787 1.2666 20 14 2.1157 -4.7833 -0.0266 21 1 1.1268 -5.4174 0.8819 22 1 2.6611 -5.8054 -0.9555 23 1 1.4523 -3.7084 -0.8074 24 6 2.0634 -0.7711 1.1911 25 8 1.8896 -0.5189 2.3641 26 1 -0.3632 0.4791 0.9092 27 1 -0.3633 0.5479 -0.8694 28 1 -0.3634 -1.0268 -0.0396 29 1 2.2046 1.5112 2.1310 30 1 3.0818 3.8090 2.1417 31 1 3.7205 5.5260 2.0049 32 1 4.1929 6.9029 1.1660 33 1 2.8784 3.8859 -2.1414 34 1 2.0117 1.5841 -2.1305 35 1 1.9047 -0.5410 -2.0941 36 1 5.3211 -4.3769 1.7219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348976959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:47 Heat of formation + Delta-G solvation = -40.095159 kcal Electronic energy + Delta-G solvation = -24779.940687 eV Core-core repulsion = 21037.446492 eV Total energy + Delta-G solvation = -3742.494196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93494 -40.16284 -38.51102 -37.51128 -35.70286 -34.57343 -34.04985 -32.42198 -31.30154 -30.89667 -29.45947 -25.89860 -24.82765 -23.02947 -22.86518 -21.59941 -20.64999 -19.74634 -18.50656 -18.18349 -17.21384 -17.02346 -16.51872 -15.81940 -15.33149 -14.96434 -14.94247 -14.69995 -14.57781 -14.26150 -13.99801 -13.79176 -13.57334 -13.27927 -12.99529 -12.66991 -12.44357 -12.35584 -12.23449 -11.62022 -11.31133 -10.94707 -10.36726 -10.30925 -10.08402 -9.99174 -9.60311 -9.39514 -9.29198 -9.11066 -8.91013 -8.84178 -8.31572 -7.03193 -4.35857 0.62306 1.25993 2.36852 2.65787 3.12201 3.25296 3.38305 3.41291 3.52292 3.67134 3.97892 4.07895 4.33401 4.40352 4.56999 4.67450 4.72457 4.88266 4.95851 5.11591 5.25016 5.37716 5.53989 5.61199 5.70813 5.92121 6.03734 6.11879 6.15594 6.25825 6.41962 6.48792 6.73141 7.04977 7.32618 7.49734 7.72744 7.93611 7.98805 8.46178 8.59131 8.95260 9.42680 10.37007 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.025952 B = 0.004250 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.650475 B = 6587.024753 C = 6744.608799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.152 3.848 3 C -0.050 4.050 4 C -0.114 4.114 5 C -0.083 4.083 6 C -0.144 4.144 7 C 0.567 3.433 8 N -0.852 5.852 9 O -0.544 6.544 10 C -0.059 4.059 11 C -0.109 4.109 12 N -0.734 5.734 13 C 0.681 3.319 14 O -0.540 6.540 15 N -0.405 5.405 16 C -0.453 4.453 17 H 0.103 0.897 18 C 0.067 3.933 19 N -0.829 5.829 20 Si 1.069 2.931 21 H -0.295 1.295 22 H -0.279 1.279 23 H -0.286 1.286 24 C 0.484 3.516 25 O -0.499 6.499 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.128 0.872 31 H 0.402 0.598 32 H 0.404 0.596 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.427 0.573 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 16.603 -1.242 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.061 3.939 3 C -0.051 4.051 4 C -0.132 4.132 5 C -0.101 4.101 6 C -0.147 4.147 7 C 0.353 3.647 8 N -0.416 5.416 9 O -0.422 6.422 10 C -0.078 4.078 11 C -0.128 4.128 12 N -0.399 5.399 13 C 0.384 3.616 14 O -0.415 6.415 15 N -0.137 5.137 16 C -0.576 4.576 17 H 0.120 0.880 18 C -0.149 4.149 19 N -0.457 5.457 20 Si 0.897 3.103 21 H -0.224 1.224 22 H -0.204 1.204 23 H -0.212 1.212 24 C 0.272 3.728 25 O -0.375 6.375 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.171 0.829 30 H 0.146 0.854 31 H 0.232 0.768 32 H 0.235 0.765 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.270 0.730 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.098 14.986 -2.360 16.749 hybrid contribution 0.719 1.696 0.770 1.996 sum -6.379 16.682 -1.590 17.931 Atomic orbital electron populations 1.21917 0.90099 1.03813 1.03705 1.20248 0.96596 0.89582 0.87516 1.19862 0.97442 0.93734 0.94087 1.21508 0.97582 0.94709 0.99418 1.21243 0.97515 0.94651 0.96721 1.19882 1.05740 0.94300 0.94824 1.18318 0.76542 0.86150 0.83652 1.43764 1.69532 1.19463 1.08826 1.90805 1.53501 1.66566 1.31313 1.21175 0.95046 0.93927 0.97656 1.20868 1.00013 0.94270 0.97603 1.45649 1.56585 1.29853 1.07838 1.16176 0.79904 0.82003 0.83472 1.90786 1.48352 1.41058 1.61305 1.42109 1.41161 1.25196 1.05187 1.20311 1.39807 0.89644 1.07824 0.87972 1.26337 0.99878 0.92541 0.96130 1.70806 1.02900 1.40770 1.31188 0.83620 0.74935 0.76062 0.75730 1.22362 1.20380 1.21226 1.20398 0.79418 0.84142 0.88796 1.90557 1.59417 1.71057 1.16494 0.90026 0.90922 0.90839 0.82928 0.85425 0.76797 0.76528 0.84477 0.85253 0.73027 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.97 37.16 0.33 -1.42 16 2 C 0.15 2.46 1.15 -133.24 -0.15 2.30 16 3 C -0.05 -0.70 4.90 -104.53 -0.51 -1.22 16 4 C -0.11 -1.58 9.16 -39.64 -0.36 -1.94 16 5 C -0.08 -0.93 9.54 -39.19 -0.37 -1.30 16 6 C -0.14 -1.73 5.87 -104.97 -0.62 -2.34 16 7 C 0.57 6.71 8.05 -12.33 -0.10 6.61 16 8 N -0.85 -6.38 8.82 30.53 0.27 -6.11 16 9 O -0.54 -8.35 17.18 5.32 0.09 -8.26 16 10 C -0.06 -0.72 9.60 -39.18 -0.38 -1.10 16 11 C -0.11 -1.33 9.33 -39.64 -0.37 -1.70 16 12 N -0.73 -12.51 5.36 -54.02 -0.29 -12.80 16 13 C 0.68 15.74 6.50 -88.02 -0.57 15.16 16 14 O -0.54 -14.13 13.94 5.34 0.07 -14.05 16 15 N -0.41 -10.00 2.36 -65.57 -0.16 -10.16 16 16 C -0.45 -12.67 9.74 -14.76 -0.14 -12.81 16 17 H 0.10 3.01 8.06 -52.49 -0.42 2.58 16 18 C 0.07 1.91 4.78 -17.50 -0.08 1.82 16 19 N -0.83 -24.13 13.69 55.49 0.76 -23.37 16 20 Si 1.07 26.61 26.41 -169.99 -4.49 22.13 16 21 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.84 5.49 56.52 0.31 -6.53 16 24 C 0.48 10.33 6.41 -10.55 -0.07 10.26 16 25 O -0.50 -11.20 15.65 5.60 0.09 -11.12 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.15 2.33 5.60 -52.49 -0.29 2.04 16 30 H 0.13 0.99 6.40 -52.49 -0.34 0.65 16 31 H 0.40 2.03 6.86 -40.82 -0.28 1.75 16 32 H 0.40 2.39 8.93 -40.82 -0.36 2.03 16 33 H 0.14 1.57 7.65 -52.49 -0.40 1.17 16 34 H 0.13 1.30 7.09 -52.49 -0.37 0.92 16 35 H 0.43 5.68 8.17 -40.82 -0.33 5.35 16 36 H 0.28 7.99 8.73 -40.82 -0.36 7.63 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -35.14 309.06 -5.71 -40.85 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.32 Total: 5.90 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: -3.40 Total: 12.33 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.58 Total: -52.43 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: 0.25 Total: -33.43 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -4.49 Total: 22.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.14 -5.71 -40.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348976959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.753 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds