Wall clock time and date at job start Tue Mar 31 2020 03:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 110.53518 * 2 1 4 4 C 1.38357 * 119.85334 * 266.89813 * 3 2 1 5 5 C 1.37959 * 120.14678 * 179.72471 * 4 3 2 6 6 C 1.39575 * 119.84926 * 0.56733 * 5 4 3 7 7 C 1.47847 * 120.14644 * 179.72622 * 6 5 4 8 8 N 1.34777 * 119.99858 * 359.97438 * 7 6 5 9 9 O 1.21553 * 120.00122 * 179.97438 * 7 6 5 10 10 C 1.39578 * 119.71336 * 359.70610 * 6 5 4 11 11 C 1.37958 * 119.85017 * 359.97438 * 10 6 5 12 12 N 1.47309 * 110.59815 * 122.99499 * 2 1 3 13 13 C 1.34530 * 106.61895 * 118.52820 * 12 2 1 14 14 O 1.21522 * 123.77150 * 180.26676 * 13 12 2 15 15 N 1.33792 * 112.45690 * 359.97438 * 13 12 2 16 16 C 1.37507 * 124.17949 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00059 * 327.09737 * 16 15 13 18 18 C 1.38890 * 120.00169 * 147.09033 * 16 15 13 19 19 N 1.31381 * 120.00055 * 340.12106 * 18 16 15 20 20 Si 1.86804 * 120.00040 * 160.12594 * 18 16 15 21 21 H 1.48499 * 109.46868 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47156 * 120.00170 * 20 18 16 23 23 H 1.48503 * 109.47043 * 239.99982 * 20 18 16 24 24 C 1.34768 * 111.64128 * 0.02562 * 15 13 12 25 25 O 1.21242 * 127.15408 * 180.02562 * 24 15 13 26 26 H 1.08995 * 109.46984 * 182.13347 * 1 2 3 27 27 H 1.09009 * 109.46913 * 302.13247 * 1 2 3 28 28 H 1.09001 * 109.46898 * 62.12669 * 1 2 3 29 29 H 1.08005 * 119.92840 * 359.97438 * 4 3 2 30 30 H 1.07992 * 120.07879 * 180.27548 * 5 4 3 31 31 H 0.97000 * 119.99797 * 359.97438 * 8 7 6 32 32 H 0.96998 * 120.00421 * 180.02562 * 8 7 6 33 33 H 1.08000 * 120.07471 * 180.02562 * 10 6 5 34 34 H 1.08009 * 119.92567 * 179.97438 * 11 10 6 35 35 H 0.96998 * 126.69335 * 298.55749 * 12 2 1 36 36 H 0.97004 * 120.00445 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3611 2.0334 -1.1982 5 6 2.8400 3.3272 -1.2056 6 6 3.0305 4.0043 0.0000 7 6 3.5491 5.3888 0.0000 8 7 3.8396 5.9997 -1.1658 9 8 3.7136 5.9762 1.0514 10 6 2.7288 3.3689 1.2055 11 6 2.2443 2.0772 1.1985 12 7 2.0483 -0.7509 1.1565 13 6 2.7599 -1.7790 0.6602 14 8 3.3248 -2.6049 1.3498 15 7 2.7711 -1.7942 -0.6776 16 6 3.4252 -2.7380 -1.4340 17 1 4.3455 -3.1746 -1.0751 18 6 2.9024 -3.1299 -2.6596 19 7 1.6335 -2.9216 -2.9294 20 14 4.0032 -3.9534 -3.9244 21 1 5.3799 -4.0711 -3.3805 22 1 3.4753 -5.3063 -4.2341 23 1 4.0295 -3.1366 -5.1644 24 6 2.0630 -0.7695 -1.1922 25 8 1.8880 -0.5162 -2.3649 26 1 -0.3633 -1.0269 0.0383 27 1 -0.3633 0.5466 0.8703 28 1 -0.3633 0.4805 -0.9085 29 1 2.2181 1.5065 -2.1301 30 1 3.0714 3.8133 -2.1417 31 1 3.7087 5.5308 -2.0048 32 1 4.1802 6.9079 -1.1658 33 1 2.8736 3.8875 2.1417 34 1 2.0108 1.5842 2.1307 35 1 1.9041 -0.5446 2.0933 36 1 1.2684 -3.1950 -3.7855 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348976961.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:53 Heat of formation + Delta-G solvation = -42.959862 kcal Electronic energy + Delta-G solvation = -24796.984411 eV Core-core repulsion = 21054.365993 eV Total energy + Delta-G solvation = -3742.618418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.58671 -40.04122 -38.33325 -37.14591 -35.42062 -34.34992 -33.95988 -32.01009 -31.14082 -30.73760 -29.25180 -25.92192 -24.80217 -23.09328 -22.68113 -21.15579 -20.63283 -19.92005 -18.36054 -17.62906 -16.94548 -16.43881 -16.23596 -15.75641 -15.15058 -14.87018 -14.81133 -14.53773 -14.34078 -14.09280 -13.86544 -13.54579 -13.52707 -13.22776 -12.53249 -12.46201 -12.19642 -12.01579 -11.67689 -11.41564 -11.19455 -11.09405 -10.82213 -10.41824 -10.21986 -9.92042 -9.71893 -9.38167 -9.05878 -8.99211 -8.85595 -8.63824 -8.01168 -6.49597 -4.25284 0.74584 1.38439 2.72728 2.86268 3.16167 3.21899 3.27734 3.33614 3.46625 3.80345 4.08921 4.30685 4.37558 4.54783 4.75463 4.80214 4.97662 5.04594 5.18122 5.27976 5.41065 5.51779 5.68827 5.82581 5.93885 6.06582 6.23359 6.25851 6.35587 6.49246 6.55972 6.61104 6.86737 7.12878 7.38263 7.52986 7.88271 8.06507 8.11330 8.64651 8.93802 9.11848 9.70038 10.60071 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.004622 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.065939 B = 6056.077826 C = 6714.525234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.152 3.848 3 C -0.044 4.044 4 C -0.113 4.113 5 C -0.083 4.083 6 C -0.147 4.147 7 C 0.567 3.433 8 N -0.852 5.852 9 O -0.546 6.546 10 C -0.061 4.061 11 C -0.111 4.111 12 N -0.737 5.737 13 C 0.679 3.321 14 O -0.566 6.566 15 N -0.403 5.403 16 C -0.352 4.352 17 H 0.104 0.896 18 C 0.059 3.941 19 N -0.826 5.826 20 Si 0.929 3.071 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.277 1.277 24 C 0.503 3.497 25 O -0.457 6.457 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.155 0.845 30 H 0.127 0.873 31 H 0.402 0.598 32 H 0.403 0.597 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.422 0.578 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 13.475 1.479 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.060 3.940 3 C -0.046 4.046 4 C -0.131 4.131 5 C -0.102 4.102 6 C -0.150 4.150 7 C 0.354 3.646 8 N -0.416 5.416 9 O -0.424 6.424 10 C -0.079 4.079 11 C -0.130 4.130 12 N -0.402 5.402 13 C 0.383 3.617 14 O -0.444 6.444 15 N -0.135 5.135 16 C -0.477 4.477 17 H 0.122 0.878 18 C -0.153 4.153 19 N -0.459 5.459 20 Si 0.754 3.246 21 H -0.189 1.189 22 H -0.205 1.205 23 H -0.202 1.202 24 C 0.289 3.711 25 O -0.329 6.329 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.172 0.828 30 H 0.145 0.855 31 H 0.232 0.768 32 H 0.234 0.766 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.264 0.736 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.657 13.263 1.723 13.476 hybrid contribution 0.304 -0.187 -0.595 0.694 sum -1.353 13.076 1.127 13.194 Atomic orbital electron populations 1.21878 0.90570 1.03707 1.03065 1.20274 0.96388 0.89426 0.87913 1.19887 0.96831 0.93968 0.93931 1.21555 0.97327 0.94578 0.99624 1.21241 0.97652 0.94655 0.96623 1.19856 1.06068 0.94239 0.94850 1.18335 0.76462 0.86188 0.83605 1.43767 1.69633 1.19361 1.08864 1.90796 1.53576 1.66669 1.31336 1.21151 0.95272 0.93954 0.97562 1.20861 1.00189 0.94273 0.97632 1.45626 1.56645 1.30286 1.07628 1.16408 0.80039 0.81574 0.83715 1.90826 1.49861 1.41660 1.62008 1.41797 1.43881 1.23507 1.04290 1.19421 1.06644 1.21011 1.00665 0.87801 1.25313 0.95344 0.95837 0.98766 1.69912 1.11436 1.41203 1.23334 0.85857 0.80308 0.78330 0.80069 1.18936 1.20538 1.20216 1.19807 0.81842 0.81105 0.88335 1.90548 1.57769 1.68259 1.16287 0.90848 0.91606 0.90322 0.82799 0.85532 0.76779 0.76612 0.84631 0.85379 0.73569 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.96 37.16 0.33 -1.68 16 2 C 0.15 2.67 1.16 -133.25 -0.15 2.51 16 3 C -0.04 -0.68 4.90 -104.53 -0.51 -1.19 16 4 C -0.11 -1.69 9.16 -39.64 -0.36 -2.06 16 5 C -0.08 -1.00 9.54 -39.19 -0.37 -1.38 16 6 C -0.15 -1.86 5.87 -104.97 -0.62 -2.48 16 7 C 0.57 7.04 8.05 -12.33 -0.10 6.94 16 8 N -0.85 -6.86 8.82 30.53 0.27 -6.59 16 9 O -0.55 -8.65 17.18 5.32 0.09 -8.56 16 10 C -0.06 -0.78 9.60 -39.18 -0.38 -1.16 16 11 C -0.11 -1.45 9.34 -39.64 -0.37 -1.82 16 12 N -0.74 -13.13 5.37 -54.03 -0.29 -13.42 16 13 C 0.68 16.07 8.57 -88.02 -0.75 15.32 16 14 O -0.57 -14.97 17.62 5.35 0.09 -14.87 16 15 N -0.40 -10.32 2.69 -65.57 -0.18 -10.50 16 16 C -0.35 -9.70 9.46 -14.76 -0.14 -9.84 16 17 H 0.10 2.88 7.91 -52.49 -0.41 2.46 16 18 C 0.06 1.57 4.82 -17.50 -0.08 1.48 16 19 N -0.83 -22.68 11.20 55.49 0.62 -22.05 16 20 Si 0.93 20.53 29.60 -169.99 -5.03 15.49 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 C 0.50 11.62 5.72 -10.56 -0.06 11.56 16 25 O -0.46 -11.38 13.25 5.59 0.07 -11.31 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.15 2.60 5.58 -52.48 -0.29 2.31 16 30 H 0.13 1.10 6.40 -52.49 -0.34 0.76 16 31 H 0.40 2.28 6.86 -40.82 -0.28 2.00 16 32 H 0.40 2.59 8.93 -40.82 -0.36 2.22 16 33 H 0.14 1.64 7.65 -52.49 -0.40 1.24 16 34 H 0.13 1.39 7.10 -52.48 -0.37 1.02 16 35 H 0.42 5.95 8.18 -40.82 -0.33 5.62 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 313.54 15.07 4.72 4.72 Total: -1.00 -34.91 313.54 -6.39 -41.30 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.20 Total: 9.57 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: -3.57 Total: 16.21 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.42 Total: -52.56 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: 0.26 Total: -34.74 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.91 -6.39 -41.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348976961.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.659 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds