Wall clock time and date at job start Tue Mar 31 2020 03:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47507 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47516 * 120.00008 * 3 2 1 6 6 H 1.48504 * 109.47066 * 240.00114 * 3 2 1 7 7 C 1.37877 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00146 * 0.02562 * 7 2 1 10 10 O 1.42895 * 112.94241 * 50.32902 * 9 7 2 11 11 C 1.53948 * 113.73966 * 278.74006 * 9 7 2 12 12 N 1.47810 * 86.03352 * 222.08381 * 11 9 7 13 13 C 1.34777 * 134.45700 * 204.64437 * 12 11 9 14 14 O 1.21600 * 120.00300 * 174.31488 * 13 12 11 15 15 C 1.47511 * 119.99868 * 354.32372 * 13 12 11 16 16 C 1.40154 * 119.94976 * 173.05042 * 15 13 12 17 17 C 1.36206 * 120.49506 * 179.97438 * 16 15 13 18 18 C 1.40016 * 120.08676 * 359.97438 * 17 16 15 19 19 N 1.35568 * 133.27350 * 180.02562 * 18 17 16 20 20 C 1.30916 * 109.71310 * 179.97438 * 19 18 17 21 21 O 1.35201 * 125.00935 * 180.02562 * 20 19 18 22 22 N 1.36256 * 109.97549 * 359.97438 * 20 19 18 23 23 H 0.96998 * 126.39864 * 179.97438 * 22 20 19 24 24 C 1.38561 * 107.20281 * 0.02562 * 22 20 19 25 25 C 1.38218 * 133.89450 * 180.32674 * 24 22 20 26 26 C 1.47580 * 91.05509 * 24.55017 * 12 11 9 27 27 H 0.96993 * 120.00423 * 0.02562 * 1 2 3 28 28 H 0.96701 * 114.00689 * 309.66668 * 10 9 7 29 29 H 1.08999 * 113.76821 * 336.34492 * 11 9 7 30 30 H 1.08994 * 113.76837 * 107.74815 * 11 9 7 31 31 H 1.07996 * 119.75542 * 359.96949 * 16 15 13 32 32 H 1.08004 * 119.95610 * 179.97438 * 17 16 15 33 33 H 0.96700 * 113.99973 * 89.97395 * 21 20 19 34 34 H 1.08005 * 120.20150 * 359.90972 * 25 24 22 35 35 H 1.08996 * 113.77237 * 221.15557 * 26 12 11 36 36 H 1.08995 * 113.87434 * 89.76200 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.2455 -2.5618 -1.0127 11 6 0.7553 -2.9286 1.3933 12 7 1.1914 -4.2895 1.0160 13 6 0.8419 -5.5332 1.4001 14 8 1.3113 -6.4998 0.8309 15 6 -0.1101 -5.7218 2.5110 16 6 -0.5852 -7.0048 2.8152 17 6 -1.4640 -7.1917 3.8388 18 6 -1.9003 -6.0990 4.5978 19 7 -2.7474 -5.9767 5.6491 20 6 -2.8254 -4.7205 6.0096 21 8 -3.5826 -4.2509 7.0265 22 7 -2.0300 -3.9565 5.2095 23 1 -1.9093 -2.9957 5.2667 24 6 -1.4265 -4.8081 4.2983 25 6 -0.5304 -4.6237 3.2622 26 6 2.1610 -3.7401 0.0485 27 1 -0.4850 0.8399 -0.0004 28 1 -0.3467 -1.7975 -1.0271 29 1 1.3260 -2.4965 2.2153 30 1 -0.3224 -2.8320 1.5250 31 1 -0.2520 -7.8516 2.2336 32 1 -1.8249 -8.1842 4.0654 33 1 -3.1278 -4.2327 7.8797 34 1 -0.1612 -3.6350 3.0327 35 1 2.2035 -4.2902 -0.8915 36 1 3.1461 -3.5464 0.4728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356579130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:11 Heat of formation + Delta-G solvation = 0.630278 kcal Electronic energy + Delta-G solvation = -24168.902116 eV Core-core repulsion = 20428.173908 eV Total energy + Delta-G solvation = -3740.728208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.28162 -39.81162 -38.31432 -37.46634 -36.08801 -34.09452 -33.36707 -32.30214 -30.52841 -29.39804 -28.18384 -25.59017 -25.47315 -23.48049 -22.59692 -21.76410 -20.31847 -19.23388 -18.94062 -17.66673 -17.48853 -17.16078 -16.45655 -15.93849 -15.42886 -14.97320 -14.87125 -14.47087 -14.31120 -14.05247 -13.83274 -13.52251 -13.11352 -12.65366 -12.45760 -12.17671 -12.00678 -11.67728 -11.63034 -11.52385 -11.14745 -11.09774 -10.86664 -10.61029 -10.37851 -10.18365 -9.73506 -9.32673 -8.84840 -8.54834 -8.44994 -8.23846 -7.88923 -6.47357 -4.58084 0.54796 1.38937 2.11567 2.38424 3.09838 3.16500 3.18541 3.27240 3.42086 3.56462 4.03186 4.11852 4.35923 4.74541 4.81118 4.90855 5.13084 5.24247 5.30708 5.48969 5.55829 5.83803 5.91941 6.07609 6.12384 6.24625 6.27243 6.34889 6.40380 6.49866 6.54317 6.62453 6.74279 7.00476 7.35689 7.54737 7.55783 7.73549 8.35831 8.45490 8.66693 9.13491 9.35307 10.59180 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.004365 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.986856 B = 6412.835571 C = 7908.140592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.240 3.760 10 O -0.570 6.570 11 C 0.070 3.930 12 N -0.626 5.626 13 C 0.573 3.427 14 O -0.556 6.556 15 C -0.101 4.101 16 C -0.068 4.068 17 C -0.079 4.079 18 C 0.076 3.924 19 N -0.490 5.490 20 C 0.454 3.546 21 O -0.443 6.443 22 N -0.596 5.596 23 H 0.426 0.574 24 C 0.046 3.954 25 C -0.077 4.077 26 C 0.113 3.887 27 H 0.274 0.726 28 H 0.392 0.608 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.410 0.590 34 H 0.149 0.851 35 H 0.073 0.927 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -4.188 12.190 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.090 0.910 9 C 0.198 3.802 10 O -0.382 6.382 11 C -0.053 4.053 12 N -0.358 5.358 13 C 0.363 3.637 14 O -0.437 6.437 15 C -0.105 4.105 16 C -0.089 4.089 17 C -0.098 4.098 18 C -0.043 4.043 19 N -0.222 5.222 20 C 0.150 3.850 21 O -0.244 6.244 22 N -0.220 5.220 23 H 0.266 0.734 24 C -0.063 4.063 25 C -0.099 4.099 26 C -0.009 4.009 27 H 0.084 0.916 28 H 0.246 0.754 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.268 0.732 34 H 0.166 0.834 35 H 0.092 0.908 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.806 -5.928 11.856 13.791 hybrid contribution 0.690 2.798 0.544 2.932 sum -3.116 -3.131 12.400 13.163 Atomic orbital electron populations 1.69391 1.06164 1.28339 1.49954 1.25061 0.95014 0.99846 0.93023 0.86401 0.79524 0.81631 0.79058 1.21015 1.19919 1.19763 1.21479 0.93963 0.89907 1.52316 0.90999 1.19841 0.85678 0.91280 0.83371 1.86081 1.47064 1.49824 1.55235 1.24477 0.99936 0.77821 1.03037 1.50088 1.39906 1.04503 1.41338 1.17668 0.81528 0.81982 0.82539 1.90725 1.57247 1.39207 1.56564 1.19775 1.00008 0.93502 0.97236 1.20745 0.95396 0.96606 0.96197 1.19895 0.98076 0.97213 0.94651 1.18971 0.97002 0.92884 0.95488 1.70602 1.21472 1.14423 1.15679 1.20338 0.89814 0.84819 0.90073 1.84816 1.36937 1.84345 1.18333 1.43395 1.38437 1.11189 1.28955 0.73417 1.18491 1.00946 0.90649 0.96173 1.20878 0.95597 1.00794 0.92583 1.23477 0.93191 0.92645 0.91538 0.91601 0.75365 0.89767 0.90807 0.83837 0.84563 0.73176 0.83362 0.90809 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.67 11.20 55.43 0.62 -21.05 16 2 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 3 Si 0.91 18.62 29.54 -169.99 -5.02 13.60 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.54 -12.83 8.61 -34.44 -0.30 -13.13 16 8 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.24 5.47 1.40 -90.84 -0.13 5.35 16 10 O -0.57 -14.19 13.48 -35.23 -0.48 -14.66 16 11 C 0.07 1.39 5.59 -2.84 -0.02 1.38 16 12 N -0.63 -12.76 3.60 -179.37 -0.65 -13.41 16 13 C 0.57 11.60 7.97 -12.48 -0.10 11.50 16 14 O -0.56 -12.60 17.08 5.28 0.09 -12.51 16 15 C -0.10 -1.71 5.88 -104.92 -0.62 -2.33 16 16 C -0.07 -1.02 9.51 -39.59 -0.38 -1.40 16 17 C -0.08 -1.08 10.03 -39.65 -0.40 -1.48 16 18 C 0.08 1.13 7.22 -84.61 -0.61 0.51 16 19 N -0.49 -7.06 11.29 -12.18 -0.14 -7.20 16 20 C 0.45 5.34 9.39 -88.91 -0.83 4.50 16 21 O -0.44 -3.72 13.62 -17.30 -0.24 -3.95 16 22 N -0.60 -6.73 6.27 -11.94 -0.07 -6.80 16 23 H 0.43 3.57 8.96 -40.82 -0.37 3.21 16 24 C 0.05 0.65 7.29 -83.89 -0.61 0.04 16 25 C -0.08 -1.20 9.08 -39.11 -0.35 -1.55 16 26 C 0.11 2.36 8.23 -2.97 -0.02 2.34 16 27 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 28 H 0.39 9.80 6.60 45.56 0.30 10.10 16 29 H 0.08 1.57 7.98 -51.93 -0.41 1.15 16 30 H 0.07 1.47 6.92 -51.93 -0.36 1.11 16 31 H 0.14 2.03 7.64 -52.49 -0.40 1.63 16 32 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.41 1.09 9.06 45.56 0.41 1.50 16 34 H 0.15 2.27 4.09 -52.48 -0.21 2.06 16 35 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 LS Contribution 314.64 15.07 4.74 4.74 Total: -1.00 -30.76 314.64 -7.45 -38.21 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -1.85 Total: 15.66 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -4.46 Total: 7.38 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.24 Total: -48.46 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.62 Total: -31.12 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.76 -7.45 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356579130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.840 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds