Wall clock time and date at job start Tue Mar 31 2020 03:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 110.52926 * 2 1 4 4 C 1.38355 * 119.95811 * 237.42305 * 3 2 1 5 5 C 1.38302 * 120.16914 * 180.25642 * 4 3 2 6 6 C 1.38086 * 120.08527 * 359.49458 * 5 4 3 7 7 C 1.39016 * 119.91185 * 0.25174 * 6 5 4 8 8 N 1.39530 * 120.07872 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00324 * 33.40226 * 8 7 6 10 10 O 1.21742 * 119.99910 * 5.26827 * 9 8 7 11 11 C 1.46172 * 119.99686 * 185.27396 * 9 8 7 12 12 H 1.07994 * 120.00415 * 0.02562 * 11 9 8 13 13 C 1.40130 * 119.99568 * 179.97438 * 11 9 8 14 14 N 1.30633 * 119.99914 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99631 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47216 * 60.00701 * 15 13 11 17 17 H 1.48503 * 109.46927 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47511 * 300.00325 * 15 13 11 19 19 C 1.38041 * 119.96306 * 57.17053 * 3 2 1 20 20 N 1.47308 * 110.59763 * 237.17313 * 2 1 3 21 21 C 1.34522 * 106.61627 * 241.31432 * 20 2 1 22 22 O 1.21535 * 123.77327 * 179.97438 * 21 20 2 23 23 N 1.33796 * 112.46018 * 0.02562 * 21 20 2 24 24 C 1.34763 * 111.64195 * 0.02562 * 23 21 20 25 25 O 1.21241 * 127.15903 * 180.02562 * 24 23 21 26 26 H 1.08996 * 109.47440 * 60.00104 * 1 2 3 27 27 H 1.09006 * 109.46518 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47015 * 299.99509 * 1 2 3 29 29 H 1.08001 * 119.91299 * 0.02562 * 4 3 2 30 30 H 1.08004 * 119.96130 * 179.76571 * 5 4 3 31 31 H 1.07995 * 120.04787 * 180.27737 * 6 5 4 32 32 H 0.97008 * 119.99606 * 213.39780 * 8 7 6 33 33 H 0.97004 * 119.99419 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.03558 * 359.97438 * 19 3 2 35 35 H 0.96993 * 126.69432 * 61.35145 * 20 2 1 36 36 H 0.97001 * 124.17617 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.9053 1.8320 -1.0101 5 6 3.3971 3.1246 -1.0115 6 6 3.0361 4.0036 -0.0096 7 6 2.1814 3.5862 1.0041 8 7 1.8148 4.4714 2.0185 9 6 1.6762 5.7847 1.7494 10 8 1.7764 6.1852 0.6041 11 6 1.4057 6.7281 2.8327 12 1 1.3173 6.3728 3.8487 13 6 1.2621 8.0936 2.5529 14 7 1.3695 8.5234 1.3240 15 14 0.9157 9.2991 3.9371 16 1 2.0232 9.2500 4.9251 17 1 0.8075 10.6723 3.3822 18 1 -0.3596 8.9336 4.6045 19 6 1.6931 2.2843 1.0049 20 7 2.0483 -0.7475 -1.1587 21 6 2.7628 -1.7750 -0.6654 22 8 3.3321 -2.5960 -1.3574 23 7 2.7759 -1.7927 0.6724 24 6 2.0654 -0.7713 1.1900 25 8 1.8920 -0.5203 2.3634 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.1858 1.1480 -1.7975 30 1 4.0608 3.4483 -1.7996 31 1 3.4169 5.0142 -0.0138 32 1 1.6597 4.1414 2.9175 33 1 1.2697 9.4687 1.1303 34 1 1.0286 1.9565 1.7906 35 1 1.9032 -0.5392 -2.0948 36 1 3.2395 -2.4586 1.2040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358599287.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:30 Heat of formation + Delta-G solvation = -52.651341 kcal Electronic energy + Delta-G solvation = -24116.725912 eV Core-core repulsion = 20373.687240 eV Total energy + Delta-G solvation = -3743.038673 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.73687 -39.41414 -38.75890 -37.40177 -36.30836 -34.59665 -33.39201 -32.51522 -31.69381 -29.27496 -29.03284 -26.30226 -25.26143 -23.11772 -22.85966 -22.00071 -20.85605 -19.61404 -18.41295 -17.59421 -17.16099 -16.90997 -16.29087 -15.97167 -15.62632 -15.53724 -15.44100 -14.50869 -14.37540 -14.35141 -13.93141 -13.55734 -13.28986 -12.76121 -12.70305 -12.60404 -12.33997 -11.87623 -11.46705 -11.28532 -11.21182 -11.10657 -10.93270 -10.68359 -10.58877 -10.41249 -10.36027 -9.78691 -9.41106 -8.95562 -8.51486 -7.83922 -7.20899 -6.40753 -4.88247 1.34415 1.68310 1.83711 2.24373 2.80577 2.91560 3.05659 3.11140 3.12741 3.74519 3.94661 4.10465 4.27507 4.45135 4.53551 4.66063 5.04385 5.28624 5.34094 5.38727 5.45570 5.57624 5.73864 5.81955 5.87090 5.98163 6.15590 6.30234 6.51016 6.61659 6.74659 6.93549 6.96366 7.18965 7.20753 7.25560 7.66174 7.91954 7.96593 8.09715 8.79220 9.13501 10.31096 10.50069 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.031378 B = 0.003297 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.125631 B = 8489.452210 C = 8957.139792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.172 3.828 3 C -0.088 4.088 4 C -0.148 4.148 5 C -0.099 4.099 6 C -0.117 4.117 7 C 0.198 3.802 8 N -0.699 5.699 9 C 0.542 3.458 10 O -0.560 6.560 11 C -0.538 4.538 12 H 0.072 0.928 13 C 0.087 3.913 14 N -0.759 5.759 15 Si 0.913 3.087 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.150 4.150 20 N -0.713 5.713 21 C 0.708 3.292 22 O -0.549 6.549 23 N -0.681 5.681 24 C 0.537 3.463 25 O -0.454 6.454 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.395 0.605 33 H 0.273 0.727 34 H 0.125 0.875 35 H 0.441 0.559 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.342 -15.684 -1.932 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.081 3.919 3 C -0.090 4.090 4 C -0.168 4.168 5 C -0.118 4.118 6 C -0.138 4.138 7 C 0.099 3.901 8 N -0.342 5.342 9 C 0.349 3.651 10 O -0.442 6.442 11 C -0.574 4.574 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.387 5.387 15 Si 0.738 3.262 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.172 4.172 20 N -0.377 5.377 21 C 0.407 3.593 22 O -0.424 6.424 23 N -0.352 5.352 24 C 0.322 3.678 25 O -0.322 6.322 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.159 0.841 32 H 0.228 0.772 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.287 0.713 36 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -0.141 -15.342 -2.570 15.557 hybrid contribution -0.094 0.248 0.942 0.978 sum -0.235 -15.094 -1.629 15.183 Atomic orbital electron populations 1.22031 0.89389 1.03324 1.05369 1.20104 0.96999 0.90988 0.83827 1.18874 1.00969 0.91488 0.97668 1.20614 1.00453 0.96583 0.99113 1.20941 0.99582 0.92947 0.98358 1.21482 0.96482 1.00997 0.94821 1.17885 0.91953 0.89182 0.91117 1.44206 1.71300 1.08632 1.10024 1.18382 0.77597 0.78888 0.90188 1.90640 1.54696 1.76396 1.22435 1.20835 1.51653 0.91280 0.93610 0.90951 1.25744 0.92744 0.98862 0.96133 1.69969 1.33644 1.15683 1.19358 0.86328 0.79749 0.78960 0.81206 1.19085 1.20383 1.19086 1.20632 1.02869 0.93611 1.00135 1.45630 1.54468 1.28241 1.09360 1.15804 0.79537 0.82224 0.81696 1.91048 1.48780 1.41792 1.60740 1.44323 1.51400 1.30795 1.08692 1.20694 0.77161 0.80047 0.89875 1.90839 1.56506 1.68413 1.16411 0.89751 0.91405 0.89342 0.86763 0.86205 0.84128 0.77155 0.91620 0.85713 0.71339 0.72668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.76 37.16 0.33 -0.95 16 2 C 0.17 1.84 1.17 -133.25 -0.16 1.68 16 3 C -0.09 -1.21 4.82 -104.65 -0.50 -1.71 16 4 C -0.15 -2.04 9.38 -39.51 -0.37 -2.41 16 5 C -0.10 -1.59 10.04 -39.61 -0.40 -1.99 16 6 C -0.12 -2.32 8.65 -39.35 -0.34 -2.66 16 7 C 0.20 3.89 6.28 -83.77 -0.53 3.37 16 8 N -0.70 -15.03 5.32 -11.20 -0.06 -15.09 16 9 C 0.54 14.46 7.47 -13.08 -0.10 14.36 16 10 O -0.56 -16.74 12.70 5.15 0.07 -16.68 16 11 C -0.54 -14.25 9.54 -35.69 -0.34 -14.59 16 12 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 13 C 0.09 2.27 5.50 -17.35 -0.10 2.18 16 14 N -0.76 -21.41 11.82 55.55 0.66 -20.76 16 15 Si 0.91 19.03 29.56 -169.99 -5.02 14.00 16 16 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 17 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 C -0.15 -2.42 8.74 -39.36 -0.34 -2.76 16 20 N -0.71 -6.62 4.57 -54.02 -0.25 -6.86 16 21 C 0.71 7.81 8.99 -88.02 -0.79 7.02 16 22 O -0.55 -7.69 18.04 5.34 0.10 -7.60 16 23 N -0.68 -6.68 5.70 -15.79 -0.09 -6.77 16 24 C 0.54 6.21 7.35 -10.56 -0.08 6.13 16 25 O -0.45 -6.34 17.63 5.59 0.10 -6.24 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.84 7.33 -51.92 -0.38 0.46 16 29 H 0.11 1.29 6.70 -52.49 -0.35 0.93 16 30 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.14 3.23 6.41 -52.49 -0.34 2.90 16 32 H 0.39 7.36 8.79 -40.82 -0.36 7.00 16 33 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 34 H 0.12 1.86 7.34 -52.49 -0.39 1.47 16 35 H 0.44 3.24 8.56 -40.82 -0.35 2.89 16 36 H 0.43 3.27 8.96 -40.82 -0.37 2.91 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -33.94 317.94 -6.77 -40.72 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -3.34 Total: 12.82 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -3.72 Total: 7.67 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.26 Total: -49.48 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: 0.26 Total: -30.52 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.94 -6.77 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358599287.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.935 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds