Wall clock time and date at job start Tue Mar 31 2020 03:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 110.53521 * 2 1 4 4 C 1.38357 * 119.96057 * 120.95612 * 3 2 1 5 5 C 1.38306 * 120.16556 * 180.29924 * 4 3 2 6 6 C 1.38080 * 120.08646 * 359.72259 * 5 4 3 7 7 C 1.39014 * 119.91524 * 0.02562 * 6 5 4 8 8 N 1.39531 * 120.08156 * 180.02562 * 7 6 5 9 9 C 1.34770 * 119.99905 * 324.86595 * 8 7 6 10 10 O 1.21739 * 120.00653 * 4.60807 * 9 8 7 11 11 C 1.46178 * 119.99727 * 184.61298 * 9 8 7 12 12 H 1.07998 * 119.99947 * 359.97438 * 11 9 8 13 13 C 1.40124 * 119.99719 * 179.97438 * 11 9 8 14 14 N 1.30634 * 120.00169 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99758 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47197 * 89.99881 * 15 13 11 17 17 H 1.48492 * 109.47246 * 210.00170 * 15 13 11 18 18 H 1.48501 * 109.47087 * 330.00162 * 15 13 11 19 19 C 1.38043 * 119.95927 * 300.69733 * 3 2 1 20 20 N 1.47316 * 110.60023 * 122.82972 * 2 1 3 21 21 C 1.34527 * 106.61837 * 118.68053 * 20 2 1 22 22 O 1.21539 * 123.76662 * 180.02562 * 21 20 2 23 23 N 1.33796 * 112.45933 * 359.97438 * 21 20 2 24 24 C 1.35113 * 111.68295 * 359.91220 * 23 21 20 25 25 O 1.21236 * 127.33458 * 180.09941 * 24 23 21 26 26 H 1.09003 * 109.47018 * 59.99803 * 1 2 3 27 27 H 1.09003 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47087 * 300.00182 * 1 2 3 29 29 H 1.07999 * 119.91600 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.95814 * 179.70088 * 5 4 3 31 31 H 1.08002 * 120.04729 * 180.02562 * 6 5 4 32 32 H 0.96999 * 119.99857 * 144.86881 * 8 7 6 33 33 H 0.96999 * 119.99813 * 179.97438 * 14 13 11 34 34 H 1.08004 * 120.03964 * 359.97438 * 19 3 2 35 35 H 0.96995 * 126.68813 * 298.71266 * 20 2 1 36 36 H 0.96995 * 124.17554 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4112 0.0000 4 6 2.8784 1.8420 1.0279 5 6 3.3609 3.1382 1.0354 6 6 3.0305 4.0057 0.0132 7 6 2.2114 3.5749 -1.0241 8 7 1.8757 4.4485 -2.0590 9 6 1.6897 5.7582 -1.8017 10 8 1.8959 6.1944 -0.6840 11 6 1.2401 6.6553 -2.8647 12 1 1.0574 6.2685 -3.8564 13 6 1.0461 8.0169 -2.5970 14 7 1.2666 8.4847 -1.3973 15 14 0.4723 9.1634 -3.9556 16 1 -1.0119 9.2095 -3.9704 17 1 1.0075 10.5268 -3.7117 18 1 0.9651 8.6650 -5.2648 19 6 1.7287 2.2710 -1.0284 20 7 2.0483 -0.7476 1.1587 21 6 2.7628 -1.7751 0.6653 22 8 3.3320 -2.5961 1.3575 23 7 2.7758 -1.7929 -0.6725 24 6 2.0625 -0.7698 -1.1923 25 8 1.8854 -0.5180 -2.3649 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1386 1.1658 1.8288 30 1 3.9966 3.4723 1.8420 31 1 3.4080 5.0175 0.0195 32 1 1.7763 4.1130 -2.9637 33 1 1.1327 9.4273 -1.2122 34 1 1.0924 1.9326 -1.8329 35 1 1.9024 -0.5397 2.0948 36 1 3.2393 -2.4588 -1.2040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358599289.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:33 Heat of formation + Delta-G solvation = -52.413001 kcal Electronic energy + Delta-G solvation = -24124.521586 eV Core-core repulsion = 20381.493249 eV Total energy + Delta-G solvation = -3743.028337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.70871 -39.41033 -38.75790 -37.39956 -36.30575 -34.57852 -33.38603 -32.51761 -31.68062 -29.28016 -29.03485 -26.29710 -25.25320 -23.10827 -22.84706 -21.98748 -20.84029 -19.63462 -18.41455 -17.59232 -17.14643 -16.90762 -16.27462 -15.97937 -15.62927 -15.54225 -15.42775 -14.49530 -14.37859 -14.35150 -13.92924 -13.54808 -13.27760 -12.82702 -12.74811 -12.51064 -12.33102 -11.88554 -11.46045 -11.28941 -11.20549 -11.11325 -10.92624 -10.68997 -10.58415 -10.38366 -10.35459 -9.78288 -9.38920 -8.95633 -8.50571 -7.79994 -7.23845 -6.40464 -4.87901 1.34431 1.69020 1.83527 2.24016 2.80580 2.91395 3.03963 3.11443 3.14667 3.74875 3.94805 4.11315 4.27234 4.45428 4.53455 4.66350 5.03927 5.28979 5.34329 5.39239 5.45435 5.56747 5.74559 5.82747 5.87909 5.99502 6.16617 6.31885 6.51147 6.61682 6.74865 6.94932 6.99427 7.18705 7.21398 7.26993 7.65811 7.92406 7.97490 8.10293 8.79668 9.13955 10.31232 10.50244 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.030661 B = 0.003324 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.000504 B = 8420.309219 C = 8916.183299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.172 3.828 3 C -0.090 4.090 4 C -0.146 4.146 5 C -0.102 4.102 6 C -0.117 4.117 7 C 0.195 3.805 8 N -0.699 5.699 9 C 0.543 3.457 10 O -0.560 6.560 11 C -0.537 4.537 12 H 0.073 0.927 13 C 0.087 3.913 14 N -0.759 5.759 15 Si 0.913 3.087 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.263 1.263 19 C -0.149 4.149 20 N -0.713 5.713 21 C 0.708 3.292 22 O -0.550 6.550 23 N -0.682 5.682 24 C 0.538 3.462 25 O -0.453 6.453 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.395 0.605 33 H 0.272 0.728 34 H 0.125 0.875 35 H 0.441 0.559 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.407 -15.648 2.135 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.081 3.919 3 C -0.092 4.092 4 C -0.166 4.166 5 C -0.120 4.120 6 C -0.138 4.138 7 C 0.095 3.905 8 N -0.342 5.342 9 C 0.350 3.650 10 O -0.442 6.442 11 C -0.573 4.573 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.387 5.387 15 Si 0.737 3.263 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.171 4.171 20 N -0.377 5.377 21 C 0.408 3.592 22 O -0.424 6.424 23 N -0.354 5.354 24 C 0.323 3.677 25 O -0.320 6.320 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.164 0.836 32 H 0.229 0.771 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.287 0.713 36 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -0.148 -15.288 2.750 15.534 hybrid contribution -0.199 0.204 -0.914 0.958 sum -0.348 -15.083 1.835 15.199 Atomic orbital electron populations 1.22031 0.89395 1.03318 1.05376 1.20101 0.96998 0.90979 0.83851 1.18875 1.01317 0.91582 0.97388 1.20622 1.00609 0.96512 0.98863 1.20972 0.99685 0.92973 0.98406 1.21654 0.96534 1.01247 0.94359 1.17903 0.92269 0.89243 0.91054 1.44149 1.72142 1.09313 1.08607 1.18396 0.78207 0.78691 0.89708 1.90615 1.55196 1.74223 1.24207 1.20858 1.47597 0.92539 0.96335 0.90910 1.25743 0.93195 0.98547 0.95993 1.69976 1.33903 1.14638 1.20150 0.86271 0.79415 0.79194 0.81387 1.19550 1.20281 1.18723 1.20667 1.02952 0.93765 0.99716 1.45626 1.54485 1.28258 1.09337 1.15796 0.79529 0.82210 0.81685 1.91048 1.48814 1.41814 1.60723 1.44399 1.51437 1.30857 1.08656 1.20775 0.77081 0.79995 0.89862 1.90837 1.56377 1.68291 1.16519 0.89331 0.91405 0.89773 0.86792 0.86220 0.83643 0.77150 0.91687 0.85665 0.71349 0.72700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.78 37.16 0.33 -0.95 16 2 C 0.17 1.84 1.16 -133.24 -0.16 1.68 16 3 C -0.09 -1.23 4.82 -104.65 -0.50 -1.73 16 4 C -0.15 -2.02 9.38 -39.51 -0.37 -2.39 16 5 C -0.10 -1.62 10.04 -39.61 -0.40 -2.02 16 6 C -0.12 -2.33 8.69 -39.35 -0.34 -2.67 16 7 C 0.19 3.83 6.30 -83.77 -0.53 3.30 16 8 N -0.70 -15.04 5.32 -11.20 -0.06 -15.10 16 9 C 0.54 14.47 7.58 -13.08 -0.10 14.37 16 10 O -0.56 -16.70 12.44 5.15 0.06 -16.64 16 11 C -0.54 -14.23 9.54 -35.69 -0.34 -14.57 16 12 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 13 C 0.09 2.27 5.50 -17.35 -0.10 2.18 16 14 N -0.76 -21.41 11.82 55.55 0.66 -20.75 16 15 Si 0.91 19.02 29.56 -169.99 -5.02 14.00 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 C -0.15 -2.40 8.70 -39.35 -0.34 -2.74 16 20 N -0.71 -6.63 4.61 -54.02 -0.25 -6.88 16 21 C 0.71 7.84 9.00 -88.02 -0.79 7.05 16 22 O -0.55 -7.72 18.04 5.33 0.10 -7.62 16 23 N -0.68 -6.71 5.72 -15.71 -0.09 -6.80 16 24 C 0.54 6.22 7.35 -10.40 -0.08 6.15 16 25 O -0.45 -6.31 17.42 5.60 0.10 -6.21 16 26 H 0.09 0.85 7.45 -51.93 -0.39 0.46 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.11 1.28 6.67 -52.49 -0.35 0.93 16 30 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.15 3.35 6.22 -52.49 -0.33 3.02 16 32 H 0.39 7.38 8.80 -40.82 -0.36 7.02 16 33 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 34 H 0.13 1.88 7.28 -52.48 -0.38 1.50 16 35 H 0.44 3.24 8.50 -40.82 -0.35 2.89 16 36 H 0.43 3.28 8.96 -40.82 -0.37 2.92 16 LS Contribution 317.45 15.07 4.78 4.78 Total: -1.00 -33.86 317.45 -6.77 -40.63 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -3.33 Total: 12.96 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -3.72 Total: 7.64 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.26 Total: -49.53 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: 0.26 Total: -30.48 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.86 -6.77 -40.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358599289.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.784 kcal (2) G-P(sol) polarization free energy of solvation -33.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds