Wall clock time and date at job start Tue Mar 31 2020 03:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34237 * 116.99922 * 2 1 4 4 O 1.20823 * 119.99716 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99745 * 179.72889 * 3 2 1 6 6 C 1.53009 * 109.47036 * 174.64484 * 5 3 2 7 7 N 1.46497 * 110.45590 * 56.93576 * 6 5 3 8 8 C 1.34775 * 120.00415 * 64.30833 * 7 6 5 9 9 O 1.21281 * 119.99789 * 355.14002 * 8 7 6 10 10 C 1.50693 * 120.00039 * 175.12860 * 8 7 6 11 11 S 1.81004 * 109.47248 * 180.02562 * 10 8 7 12 12 C 1.76194 * 100.00428 * 180.02562 * 11 10 8 13 13 H 1.08010 * 119.99618 * 0.02562 * 12 11 10 14 14 C 1.38795 * 120.00328 * 179.97438 * 12 11 10 15 15 N 1.31625 * 119.99777 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00092 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47105 * 59.99731 * 16 14 12 18 18 H 1.48498 * 109.47318 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47272 * 300.00266 * 16 14 12 20 20 C 1.54513 * 110.50870 * 294.32926 * 6 5 3 21 21 C 1.54479 * 104.05897 * 241.35584 * 20 6 5 22 22 O 1.44422 * 104.80676 * 336.01773 * 21 20 6 23 23 C 1.44648 * 105.36638 * 40.43958 * 22 21 20 24 24 H 1.08998 * 109.47331 * 59.99953 * 1 2 3 25 25 H 1.08998 * 109.47073 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46875 * 300.00221 * 1 2 3 27 27 H 1.08999 * 109.47109 * 294.64242 * 5 3 2 28 28 H 1.08998 * 109.47892 * 54.64206 * 5 3 2 29 29 H 0.97004 * 119.99700 * 244.31228 * 7 6 5 30 30 H 1.08999 * 109.47414 * 300.00622 * 10 8 7 31 31 H 1.08999 * 109.47133 * 60.00364 * 10 8 7 32 32 H 0.97003 * 119.99708 * 179.97438 * 15 14 12 33 33 H 1.09004 * 110.50949 * 359.97438 * 20 6 5 34 34 H 1.08993 * 110.50641 * 122.71097 * 20 6 5 35 35 H 1.09000 * 110.37341 * 94.85488 * 21 20 6 36 36 H 1.09007 * 110.36879 * 217.08014 * 21 20 6 37 37 H 1.08997 * 110.50830 * 200.81510 * 23 22 21 38 38 H 1.08999 * 110.34427 * 78.40514 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0062 6 6 4.0010 2.7356 -0.1298 7 7 3.4181 3.5453 0.9430 8 6 3.7612 3.3126 2.2254 9 8 4.4833 2.3776 2.4998 10 6 3.2479 4.2143 3.3182 11 16 3.8803 3.6461 4.9162 12 6 3.1453 4.8434 5.9795 13 1 2.5190 5.6204 5.5664 14 6 3.3702 4.7875 7.3480 15 7 4.1322 3.8397 7.8514 16 14 2.5915 6.0573 8.4752 17 1 1.1132 5.9889 8.3514 18 1 2.9836 5.7789 9.8801 19 1 3.0581 7.4135 8.0900 20 6 3.5952 3.2948 -1.5118 21 6 4.9389 3.6760 -2.1717 22 8 5.8446 3.8907 -1.0675 23 6 5.5418 2.8454 -0.1145 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.9476 0.8680 0.9427 28 1 3.9639 0.6983 -0.8290 29 1 2.7850 4.2488 0.7303 30 1 3.5856 5.2345 3.1361 31 1 2.1582 4.1888 3.3284 32 1 4.2897 3.8008 8.8078 33 1 3.0852 2.5305 -2.0983 34 1 2.9629 4.1751 -1.3968 35 1 5.2961 2.8621 -2.8027 36 1 4.8287 4.5888 -2.7572 37 1 5.8927 3.1218 0.8797 38 1 5.9925 1.9040 -0.4288 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362034629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:54 Heat of formation + Delta-G solvation = -160.637134 kcal Electronic energy + Delta-G solvation = -23230.052142 eV Core-core repulsion = 19585.482055 eV Total energy + Delta-G solvation = -3644.570088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16612 -39.87279 -38.36925 -36.64180 -34.68877 -32.41782 -32.07812 -30.25815 -29.15029 -27.99428 -26.66466 -25.46307 -23.32975 -21.83222 -20.80468 -19.58376 -17.89660 -17.74686 -17.14470 -16.68401 -16.52199 -16.09400 -15.95969 -15.44809 -14.87636 -14.79372 -14.61790 -14.00958 -13.72881 -13.51683 -13.13851 -13.05266 -12.71635 -12.53342 -12.20230 -12.13712 -11.80909 -11.75839 -11.74210 -11.13926 -11.03092 -11.02566 -10.92356 -10.75362 -10.54375 -9.98531 -9.81315 -9.34103 -9.05045 -8.88796 -8.23628 -6.48398 -6.20487 -3.90669 2.12133 2.55319 3.00579 3.01965 3.24792 3.28267 3.31597 3.68636 3.77012 4.13694 4.22093 4.44473 4.54970 4.74274 4.82907 4.92887 4.97758 5.04481 5.09059 5.14852 5.23963 5.35327 5.37122 5.40982 5.51461 5.56585 5.67782 5.71605 5.88239 5.92142 6.18477 6.26090 6.53055 6.68201 7.60861 7.62993 7.73543 8.36532 8.56347 9.25022 10.86932 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.016788 B = 0.003968 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.423576 B = 7054.039200 C = 8032.266750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.499 6.499 5 C -0.127 4.127 6 C 0.164 3.836 7 N -0.713 5.713 8 C 0.536 3.464 9 O -0.522 6.522 10 C -0.153 4.153 11 S -0.058 6.058 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.075 3.925 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.150 4.150 21 C 0.043 3.957 22 O -0.368 6.368 23 C 0.044 3.956 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.133 0.867 28 H 0.111 0.889 29 H 0.405 0.595 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.269 0.731 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 -4.958 -21.853 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.309 3.691 4 O -0.386 6.386 5 C -0.165 4.165 6 C 0.076 3.924 7 N -0.367 5.367 8 C 0.322 3.678 9 O -0.398 6.398 10 C -0.304 4.304 11 S 0.169 5.831 12 C -0.684 4.684 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.504 5.504 16 Si 0.744 3.256 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.188 4.188 21 C -0.034 4.034 22 O -0.287 6.287 23 C -0.034 4.034 24 H 0.079 0.921 25 H 0.118 0.882 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.129 0.871 29 H 0.241 0.759 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.600 -6.112 -21.209 22.225 hybrid contribution -2.178 2.044 0.330 3.005 sum -4.778 -4.068 -20.880 21.802 Atomic orbital electron populations 1.23246 0.76322 1.03606 1.02556 1.86506 1.23478 1.33598 1.84241 1.23568 0.91866 0.81401 0.72254 1.90631 1.67048 1.36126 1.44834 1.21923 0.88384 0.98404 1.07797 1.21297 0.94115 0.89013 0.87952 1.46023 1.47628 1.38113 1.04962 1.20335 0.79785 0.84977 0.82654 1.90645 1.36616 1.30018 1.82511 1.23529 1.04448 1.01878 1.00539 1.85298 1.65400 1.40853 0.91581 1.22834 1.35746 1.15853 0.93984 0.91016 1.24972 0.95066 0.96257 0.97176 1.70005 1.35480 1.31546 1.13330 0.86235 0.79468 0.80891 0.78980 1.19973 1.20800 1.19911 1.23232 0.98771 1.02644 0.94115 1.23442 0.87953 1.01747 0.90303 1.89234 1.58244 1.51091 1.30087 1.23871 0.92142 0.91910 0.95438 0.92074 0.88206 0.91695 0.84959 0.87097 0.75885 0.89111 0.89334 0.92150 0.89895 0.89234 0.92029 0.88809 0.86868 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.26 10.57 -39.28 -0.41 -4.68 16 3 C 0.47 5.88 7.31 36.00 0.26 6.14 16 4 O -0.50 -7.03 13.94 -18.75 -0.26 -7.29 16 5 C -0.13 -1.42 4.46 -27.88 -0.12 -1.55 16 6 C 0.16 1.93 0.51 -130.24 -0.07 1.86 16 7 N -0.71 -10.09 3.72 -46.16 -0.17 -10.27 16 8 C 0.54 9.86 7.03 -10.99 -0.08 9.78 16 9 O -0.52 -10.85 12.79 5.56 0.07 -10.78 16 10 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 11 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 12 C -0.54 -15.42 9.50 30.94 0.29 -15.12 16 13 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 14 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 15 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 16 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C -0.15 -1.36 5.51 -25.16 -0.14 -1.49 16 21 C 0.04 0.37 7.64 37.93 0.29 0.66 16 22 O -0.37 -4.65 11.65 -35.23 -0.41 -5.06 16 23 C 0.04 0.55 6.47 37.93 0.25 0.79 16 24 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.13 1.78 6.49 -51.93 -0.34 1.44 16 28 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.41 5.19 8.02 -40.82 -0.33 4.86 16 30 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 31 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 32 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.08 0.65 7.43 -51.93 -0.39 0.26 16 34 H 0.09 0.82 7.54 -51.93 -0.39 0.43 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.11 1.75 6.36 -51.93 -0.33 1.42 16 38 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -34.81 332.90 -5.90 -40.71 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.11 Total: 3.50 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 1.88 Total: 1.57 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.56 Total: -35.78 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -1.02 Total: -27.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.81 -5.90 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362034629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.924 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds