Wall clock time and date at job start Tue Mar 31 2020 03:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00106 * 2 1 4 4 O 1.20822 * 120.00235 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47065 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.68148 * 59.11285 * 6 5 3 8 8 C 1.53305 * 109.67933 * 298.59916 * 6 5 3 9 9 O 1.42965 * 109.22007 * 187.97737 * 8 6 5 10 10 C 1.42964 * 114.16936 * 62.58056 * 9 8 6 11 11 C 1.53298 * 109.22049 * 297.41961 * 10 9 8 12 12 N 1.47153 * 108.41610 * 52.28134 * 11 10 9 13 13 C 1.34776 * 120.97624 * 129.45179 * 12 11 10 14 14 O 1.21287 * 119.99599 * 185.37671 * 13 12 11 15 15 C 1.50693 * 120.00435 * 5.37697 * 13 12 11 16 16 S 1.81008 * 109.47267 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00019 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00093 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00009 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00474 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00055 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46916 * 90.00199 * 21 19 17 23 23 H 1.48496 * 109.47469 * 210.00171 * 21 19 17 24 24 H 1.48500 * 109.47256 * 330.00228 * 21 19 17 25 25 H 1.09003 * 109.46971 * 300.00712 * 1 2 3 26 26 H 1.09002 * 109.47248 * 59.99562 * 1 2 3 27 27 H 1.08991 * 109.47398 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46664 * 60.00047 * 5 3 2 29 29 H 1.08999 * 109.46769 * 300.00018 * 5 3 2 30 30 H 1.08994 * 109.51067 * 68.05226 * 8 6 5 31 31 H 1.08995 * 109.55442 * 307.92524 * 8 6 5 32 32 H 1.08994 * 109.50890 * 177.49873 * 10 9 8 33 33 H 1.08993 * 109.55102 * 57.36479 * 10 9 8 34 34 H 1.08999 * 109.67891 * 172.02303 * 11 10 9 35 35 H 1.08997 * 109.68272 * 292.54283 * 11 10 9 36 36 H 1.08999 * 109.47144 * 299.99262 * 15 13 12 37 37 H 1.09001 * 109.47364 * 59.99932 * 15 13 12 38 38 H 0.97003 * 120.00777 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 1 3.5988 3.2432 0.8818 8 6 3.4845 3.4333 -1.2663 9 8 4.0474 4.7449 -1.3493 10 6 5.4721 4.7641 -1.4656 11 6 6.0896 4.1409 -0.2085 12 7 5.4695 2.8245 0.0104 13 6 6.2249 1.7267 0.2119 14 8 5.7004 0.6362 0.2932 15 6 7.7213 1.8541 0.3363 16 16 8.4466 0.2166 0.5986 17 6 10.1510 0.6504 0.7051 18 1 10.4524 1.6831 0.6097 19 6 11.1065 -0.3352 0.9106 20 7 12.3797 -0.0111 0.9907 21 14 10.5853 -2.1214 1.0750 22 1 10.5752 -2.7595 -0.2659 23 1 11.5422 -2.8372 1.9565 24 1 9.2242 -2.1877 1.6651 25 1 -0.3633 0.5140 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.9564 0.7805 -0.8892 29 1 3.9557 0.7809 0.8908 30 1 2.3977 3.5054 -1.2250 31 1 3.7780 2.8551 -2.1424 32 1 5.8151 5.7936 -1.5677 33 1 5.7743 4.1909 -2.3420 34 1 7.1641 4.0220 -0.3476 35 1 5.8996 4.7836 0.6511 36 1 8.1262 2.2881 -0.5780 37 1 7.9621 2.4983 1.1819 38 1 13.0475 -0.6999 1.1347 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367940389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:08 Heat of formation + Delta-G solvation = -142.678913 kcal Electronic energy + Delta-G solvation = -23084.921876 eV Core-core repulsion = 19441.130516 eV Total energy + Delta-G solvation = -3643.791361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13381 -40.12690 -38.28781 -36.76906 -34.86501 -33.50365 -32.49234 -29.84097 -29.22513 -27.70258 -26.65786 -25.67034 -23.73846 -22.34056 -21.11203 -19.41213 -17.91290 -17.69587 -17.11962 -16.96383 -16.67842 -16.26483 -15.81259 -15.54689 -15.10034 -15.01566 -14.99387 -14.05297 -13.83947 -13.69435 -13.48426 -13.25452 -12.89663 -12.85237 -12.41311 -12.24340 -11.96707 -11.78593 -11.48851 -11.30692 -11.08550 -11.05324 -10.93151 -10.75816 -10.64926 -10.32713 -9.90217 -9.12083 -9.05610 -8.60993 -8.57259 -6.98932 -6.33964 -4.06741 2.03233 2.32383 2.67227 2.71051 3.07734 3.28954 3.45643 3.50987 3.62787 4.27315 4.36580 4.41358 4.60894 4.69968 4.80524 4.86459 4.88324 4.92493 4.95565 5.03291 5.05265 5.12559 5.28970 5.35215 5.41144 5.56264 5.61605 5.63948 5.75565 5.80881 5.89942 6.24543 6.34236 6.87725 7.22890 7.57287 7.88791 8.21089 8.36191 9.11924 10.75215 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.017537 B = 0.004043 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.260623 B = 6923.589479 C = 8382.474703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.458 3.542 4 O -0.517 6.517 5 C -0.108 4.108 6 C 0.129 3.871 7 H 0.090 0.910 8 C 0.044 3.956 9 O -0.376 6.376 10 C 0.043 3.957 11 C 0.074 3.926 12 N -0.619 5.619 13 C 0.537 3.463 14 O -0.513 6.513 15 C -0.124 4.124 16 S -0.139 6.139 17 C -0.523 4.523 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.879 5.879 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.142 0.858 30 H 0.123 0.877 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.537 6.601 -3.800 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.270 6.270 3 C 0.302 3.698 4 O -0.406 6.406 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.108 0.892 8 C -0.033 4.033 9 O -0.294 6.294 10 C -0.034 4.034 11 C -0.049 4.049 12 N -0.356 5.356 13 C 0.326 3.674 14 O -0.389 6.389 15 C -0.274 4.274 16 S 0.088 5.912 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.160 0.840 30 H 0.141 0.859 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.441 5.378 -3.647 21.449 hybrid contribution 0.770 0.391 0.000 0.864 sum -19.671 5.769 -3.646 20.822 Atomic orbital electron populations 1.23265 0.76582 1.03676 1.02430 1.86563 1.23217 1.33398 1.83810 1.24399 0.92754 0.81196 0.71477 1.90606 1.67712 1.36079 1.46245 1.22147 0.85344 0.97247 1.09766 1.21635 0.80107 0.95262 1.00431 0.89240 1.23376 1.00529 0.83982 0.95442 1.87996 1.19907 1.27267 1.94223 1.23030 0.81592 1.02312 0.96481 1.22498 0.99368 0.83866 0.99179 1.48218 1.05301 1.08528 1.73550 1.20400 0.88978 0.83243 0.74773 1.90683 1.72591 1.26320 1.49282 1.23351 0.92979 1.05521 1.05596 1.84778 1.05905 1.05533 1.95031 1.22292 0.88745 0.98364 1.57636 0.89371 1.24709 0.94030 0.99304 0.93208 1.69931 1.00119 1.34449 1.47077 0.86738 0.81027 0.84450 0.79642 1.19192 1.19907 1.15913 0.91927 0.91949 0.88145 0.86363 0.84025 0.85910 0.92904 0.87409 0.92362 0.87922 0.90177 0.88462 0.88272 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -4.15 10.57 -39.26 -0.41 -4.56 16 3 C 0.46 5.65 7.69 36.01 0.28 5.93 16 4 O -0.52 -6.91 13.56 -18.75 -0.25 -7.17 16 5 C -0.11 -1.37 3.77 -27.88 -0.11 -1.47 16 6 C 0.13 1.59 2.82 -67.42 -0.19 1.40 16 7 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 8 C 0.04 0.51 5.86 37.32 0.22 0.73 16 9 O -0.38 -4.44 10.74 -35.23 -0.38 -4.81 16 10 C 0.04 0.41 6.99 37.31 0.26 0.67 16 11 C 0.07 0.75 6.52 -3.53 -0.02 0.73 16 12 N -0.62 -8.01 3.02 -164.74 -0.50 -8.51 16 13 C 0.54 8.77 7.64 -10.99 -0.08 8.69 16 14 O -0.51 -9.52 11.42 5.55 0.06 -9.45 16 15 C -0.12 -2.24 4.62 36.00 0.17 -2.07 16 16 S -0.14 -3.34 18.55 -107.50 -1.99 -5.33 16 17 C -0.52 -14.56 10.04 30.94 0.31 -14.25 16 18 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 19 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 20 N -0.88 -26.01 13.97 55.49 0.78 -25.23 16 21 Si 0.86 21.21 27.74 -169.99 -4.71 16.49 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 25 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 26 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.12 1.57 7.31 -51.93 -0.38 1.19 16 29 H 0.14 2.03 6.24 -51.93 -0.32 1.70 16 30 H 0.12 1.47 5.88 -51.93 -0.31 1.16 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.98 6.07 -51.93 -0.32 0.66 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.62 7.44 -51.92 -0.39 1.23 16 37 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 324.98 15.07 4.90 4.90 Total: -1.00 -32.84 324.98 -5.80 -38.65 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.09 Total: 0.70 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 1.80 Total: 4.34 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.28 Total: -33.74 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.98 Total: -26.00 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.49 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.33 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.84 -5.80 -38.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367940389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.033 kcal (2) G-P(sol) polarization free energy of solvation -32.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds