Wall clock time and date at job start Tue Mar 31 2020 03:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99550 * 2 1 4 4 O 1.20823 * 120.00184 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99919 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47548 * 180.02562 * 5 3 2 7 7 H 1.09003 * 109.70707 * 41.66497 * 6 5 3 8 8 C 1.53291 * 109.68694 * 162.20079 * 6 5 3 9 9 O 1.42966 * 109.22524 * 172.02470 * 8 6 5 10 10 C 1.42956 * 114.16506 * 297.42271 * 9 8 6 11 11 C 1.53294 * 109.22761 * 62.58018 * 10 9 8 12 12 N 1.47152 * 108.41168 * 307.67730 * 11 10 9 13 13 C 1.34778 * 120.98298 * 230.53369 * 12 11 10 14 14 O 1.21281 * 120.00261 * 184.80952 * 13 12 11 15 15 C 1.50701 * 119.99642 * 4.82002 * 13 12 11 16 16 S 1.81002 * 109.46836 * 179.97438 * 15 13 12 17 17 C 1.76202 * 99.99731 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00431 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99859 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99950 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00077 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47345 * 90.00169 * 21 19 17 23 23 H 1.48506 * 109.47313 * 210.00408 * 21 19 17 24 24 H 1.48503 * 109.47243 * 330.00560 * 21 19 17 25 25 H 1.08992 * 109.47101 * 60.00160 * 1 2 3 26 26 H 1.08998 * 109.46688 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46956 * 299.99450 * 1 2 3 28 28 H 1.09000 * 109.47065 * 60.00006 * 5 3 2 29 29 H 1.09001 * 109.47334 * 300.00624 * 5 3 2 30 30 H 1.08997 * 109.51112 * 52.10042 * 8 6 5 31 31 H 1.09001 * 109.55261 * 291.97689 * 8 6 5 32 32 H 1.08998 * 109.51599 * 302.65174 * 10 9 8 33 33 H 1.09001 * 109.50999 * 182.50095 * 10 9 8 34 34 H 1.09001 * 109.68103 * 67.41903 * 11 10 9 35 35 H 1.08996 * 109.68314 * 187.93675 * 11 10 9 36 36 H 1.09004 * 109.46887 * 299.98797 * 15 13 12 37 37 H 1.08999 * 109.47243 * 59.99193 * 15 13 12 38 38 H 0.97002 * 119.99788 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0000 2.7422 0.0011 7 1 3.3689 3.3119 0.6832 8 6 5.4641 2.8476 0.4429 9 8 5.9145 4.1925 0.2629 10 6 5.9002 4.6376 -1.0956 11 6 4.4584 4.6239 -1.6162 12 7 3.8841 3.2937 -1.3591 13 6 3.2707 2.6015 -2.3395 14 8 2.7275 1.5466 -2.0885 15 6 3.2602 3.1382 -3.7476 16 16 2.3668 1.9898 -4.8243 17 6 2.5051 2.8409 -6.3610 18 1 3.0288 3.7840 -6.4108 19 6 1.9400 2.2995 -7.5074 20 7 2.0437 2.9350 -8.6554 21 14 1.0336 0.6685 -7.4212 22 1 -0.4016 0.9145 -7.1297 23 1 1.1606 -0.0378 -8.7214 24 1 1.6211 -0.1681 -6.3440 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.9563 0.7808 -0.8891 29 1 3.9557 0.7810 0.8908 30 1 6.0754 2.1754 -0.1592 31 1 5.5486 2.5730 1.4943 32 1 6.5131 3.9719 -1.7033 33 1 6.2975 5.6511 -1.1508 34 1 3.8734 5.3830 -1.0970 35 1 4.4530 4.8253 -2.6874 36 1 2.7660 4.1097 -3.7624 37 1 4.2850 3.2464 -4.1029 38 1 1.6491 2.5565 -9.4566 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367940392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:12 Heat of formation + Delta-G solvation = -140.813589 kcal Electronic energy + Delta-G solvation = -23728.832369 eV Core-core repulsion = 20085.121894 eV Total energy + Delta-G solvation = -3643.710474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08582 -39.60795 -38.30255 -36.15361 -34.85225 -33.54138 -32.47958 -29.85209 -28.96933 -27.64518 -26.58786 -25.65409 -23.63781 -22.28136 -20.82223 -19.30695 -17.88256 -17.48257 -17.04602 -16.78348 -16.49531 -16.04837 -15.72535 -15.45728 -15.23322 -15.00726 -14.81819 -13.91008 -13.80694 -13.61947 -13.31307 -13.09979 -12.84872 -12.61980 -12.44656 -12.03098 -11.73349 -11.72571 -11.49608 -11.29061 -11.09848 -11.04876 -10.65124 -10.49709 -10.41625 -10.16800 -9.89294 -9.16345 -9.04423 -8.61291 -8.54844 -6.96651 -6.32923 -4.05008 2.49671 2.54208 2.90324 3.02129 3.06148 3.29638 3.46007 3.51260 3.53137 4.28121 4.35176 4.43340 4.66659 4.69612 4.79552 4.91969 5.02281 5.06268 5.10181 5.15857 5.26832 5.27903 5.31518 5.40000 5.47314 5.49248 5.60926 5.65049 5.74620 5.85519 5.91623 6.37719 6.73556 6.78545 7.28581 7.90022 8.15425 8.26733 8.37253 9.13161 10.76318 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.005362 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.024535 B = 5220.291574 C = 6833.964087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.361 6.361 3 C 0.501 3.499 4 O -0.525 6.525 5 C -0.108 4.108 6 C 0.124 3.876 7 H 0.093 0.907 8 C 0.054 3.946 9 O -0.376 6.376 10 C 0.046 3.954 11 C 0.073 3.927 12 N -0.613 5.613 13 C 0.546 3.454 14 O -0.517 6.517 15 C -0.122 4.122 16 S -0.138 6.138 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.097 3.903 20 N -0.879 5.879 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.236 1.236 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.127 0.873 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.587 -0.669 19.448 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.277 6.277 3 C 0.346 3.654 4 O -0.415 6.415 5 C -0.146 4.146 6 C 0.020 3.980 7 H 0.111 0.889 8 C -0.024 4.024 9 O -0.294 6.294 10 C -0.031 4.031 11 C -0.050 4.050 12 N -0.349 5.349 13 C 0.336 3.664 14 O -0.394 6.394 15 C -0.272 4.272 16 S 0.088 5.912 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.160 1.160 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.582 -1.808 19.759 20.611 hybrid contribution -0.183 0.660 -0.952 1.173 sum 5.400 -1.148 18.806 19.600 Atomic orbital electron populations 1.23126 0.76903 1.02967 1.02233 1.86421 1.22954 1.33741 1.84614 1.22705 0.91184 0.81254 0.70275 1.90615 1.66982 1.36307 1.47561 1.21560 0.90163 0.96876 1.05967 1.21769 0.97490 0.93954 0.84743 0.88934 1.23031 0.92417 0.84430 1.02498 1.87970 1.85997 1.29078 1.26403 1.23041 0.95419 1.01412 0.83259 1.22486 0.94737 0.84470 1.03324 1.48042 1.58473 1.18961 1.09420 1.20259 0.76378 0.83646 0.86156 1.90479 1.43852 1.23393 1.81669 1.23315 1.05437 1.04592 0.93892 1.84788 1.72320 1.30111 1.03971 1.22301 1.42313 1.10540 0.91827 0.89391 1.24699 0.94786 0.97523 0.94194 1.69936 1.43644 1.38776 0.99223 0.86743 0.81434 0.84294 0.79409 1.19232 1.19881 1.15976 0.91758 0.88727 0.92666 0.85492 0.88858 0.92070 0.87368 0.92165 0.87327 0.90202 0.88026 0.88453 0.88443 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.36 -5.72 10.57 -41.81 -0.44 -6.16 16 3 C 0.50 8.18 5.12 36.00 0.18 8.36 16 4 O -0.53 -9.94 14.65 -25.74 -0.38 -10.32 16 5 C -0.11 -1.36 4.87 -27.89 -0.14 -1.49 16 6 C 0.12 1.48 2.69 -67.38 -0.18 1.30 16 7 H 0.09 1.20 7.43 -51.93 -0.39 0.81 16 8 C 0.05 0.49 6.21 37.31 0.23 0.72 16 9 O -0.38 -3.85 10.74 -35.23 -0.38 -4.23 16 10 C 0.05 0.41 6.98 37.31 0.26 0.67 16 11 C 0.07 0.78 6.55 -3.53 -0.02 0.76 16 12 N -0.61 -8.43 3.02 -164.69 -0.50 -8.93 16 13 C 0.55 9.66 7.12 -10.98 -0.08 9.58 16 14 O -0.52 -10.37 9.49 -18.86 -0.18 -10.55 16 15 C -0.12 -2.34 4.52 36.01 0.16 -2.18 16 16 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 17 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 18 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.35 13.97 55.49 0.78 -25.58 16 21 Si 0.86 21.67 27.74 -169.99 -4.71 16.95 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 25 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.13 1.80 6.17 -51.93 -0.32 1.48 16 29 H 0.09 0.81 8.02 -51.93 -0.42 0.39 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.10 1.04 6.04 -51.93 -0.31 0.73 16 36 H 0.10 1.80 7.83 -51.91 -0.41 1.39 16 37 H 0.10 1.70 7.85 -51.92 -0.41 1.30 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -35.61 324.62 -6.42 -42.03 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.21 Total: -0.13 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 1.70 Total: 7.47 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.28 Total: -34.50 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.38 Total: -31.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.61 -6.42 -42.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367940392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.779 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds