Wall clock time and date at job start Tue Mar 31 2020 03:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99563 * 2 1 4 4 O 1.20825 * 119.99973 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99914 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.99418 * 40.35632 * 5 3 2 7 7 C 1.54332 * 109.98769 * 279.32008 * 5 3 2 8 8 C 1.55162 * 103.01758 * 218.66528 * 7 5 3 9 9 H 1.08995 * 111.00346 * 153.37871 * 8 7 5 10 10 O 1.42894 * 111.00482 * 277.23593 * 8 7 5 11 11 C 1.42898 * 114.00059 * 203.65266 * 10 8 7 12 12 C 1.54919 * 101.57945 * 35.30770 * 8 7 5 13 13 N 1.47021 * 109.87963 * 161.45366 * 5 3 2 14 14 C 1.34776 * 125.64521 * 298.38952 * 13 5 3 15 15 O 1.21280 * 120.00458 * 359.72037 * 14 13 5 16 16 C 1.50702 * 119.99564 * 179.72273 * 14 13 5 17 17 S 1.81008 * 109.46925 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99767 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00286 * 0.02562 * 18 17 16 20 20 C 1.38802 * 119.99642 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00322 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99881 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99700 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99693 * 22 20 18 26 26 H 1.09003 * 109.46658 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47128 * 299.99279 * 1 2 3 28 28 H 1.08998 * 109.47344 * 60.00375 * 1 2 3 29 29 H 1.08993 * 110.85055 * 100.19783 * 7 5 3 30 30 H 1.09003 * 110.66775 * 337.04719 * 7 5 3 31 31 H 1.09001 * 109.47640 * 59.99136 * 11 10 8 32 32 H 1.08998 * 109.47252 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.46630 * 299.99745 * 11 10 8 34 34 H 1.09004 * 110.36173 * 204.15026 * 12 8 7 35 35 H 1.09000 * 110.45974 * 81.88019 * 12 8 7 36 36 H 1.08998 * 109.47573 * 60.00437 * 16 14 13 37 37 H 1.09000 * 109.46955 * 299.99406 * 16 14 13 38 38 H 0.97004 * 120.00251 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9791 0.5153 -0.6641 7 6 4.1060 1.0678 1.4304 8 6 5.2836 2.0751 1.5090 9 1 5.4622 2.3878 2.5378 10 8 6.4683 1.5242 0.9303 11 6 7.6782 2.1126 1.4119 12 6 4.7444 3.2511 0.6568 13 7 3.9967 2.6103 -0.4402 14 6 3.7445 3.1598 -1.6448 15 8 3.1160 2.5383 -2.4753 16 6 4.2434 4.5465 -1.9597 17 16 3.7476 4.9989 -3.6407 18 6 4.4406 6.6159 -3.7394 19 1 4.9783 7.0253 -2.8971 20 6 4.2953 7.3635 -4.8998 21 7 3.6403 6.8643 -5.9267 22 14 5.0305 9.0775 -5.0048 23 1 5.7122 9.4029 -3.7262 24 1 3.9501 10.0652 -5.2545 25 1 6.0134 9.1273 -6.1169 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 4.4621 0.0468 1.5666 30 1 3.3415 1.3099 2.1687 31 1 7.7491 1.9672 2.4898 32 1 8.5311 1.6398 0.9249 33 1 7.6773 3.1795 1.1886 34 1 5.5702 3.8412 0.2592 35 1 4.0815 3.8798 1.2512 36 1 5.3305 4.5677 -1.8831 37 1 3.8153 5.2562 -1.2517 38 1 3.2588 5.9741 -5.8724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377635391.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:04 Heat of formation + Delta-G solvation = -155.409362 kcal Electronic energy + Delta-G solvation = -23106.328472 eV Core-core repulsion = 19461.985078 eV Total energy + Delta-G solvation = -3644.343394 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06410 -39.56008 -38.31598 -36.59698 -35.92855 -32.51118 -31.97724 -30.07163 -28.86860 -27.56096 -26.85244 -24.87701 -24.13307 -22.06716 -21.25154 -19.33756 -18.30616 -18.09736 -17.15590 -17.03163 -16.60626 -16.18609 -15.59271 -15.35789 -15.11589 -14.89888 -14.14613 -13.96176 -13.82981 -13.65180 -13.17743 -13.03449 -12.90886 -12.51214 -12.35145 -12.20877 -12.08829 -11.95658 -11.82709 -11.78287 -11.28953 -10.88973 -10.85103 -10.51758 -10.19828 -10.10426 -9.56952 -9.55700 -8.99584 -8.72761 -8.19796 -6.64911 -6.60776 -3.98207 2.09921 2.38232 2.80935 3.06868 3.28869 3.33187 3.41514 3.43513 3.55329 4.03221 4.07118 4.25989 4.50851 4.73154 4.82324 4.88532 4.98722 5.01070 5.06808 5.10636 5.12197 5.23458 5.25690 5.33648 5.40891 5.42071 5.44524 5.46812 5.53359 5.79577 6.01153 6.10231 6.31074 6.79771 7.43132 7.72912 7.94362 8.41077 8.51717 9.28937 10.83318 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.004231 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.749054 B = 6616.621861 C = 8072.766471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.453 3.547 4 O -0.487 6.487 5 C 0.154 3.846 6 H 0.114 0.886 7 C -0.112 4.112 8 C 0.075 3.925 9 H 0.093 0.907 10 O -0.371 6.371 11 C 0.028 3.972 12 C 0.078 3.922 13 N -0.603 5.603 14 C 0.555 3.445 15 O -0.509 6.509 16 C -0.121 4.121 17 S -0.115 6.115 18 C -0.606 4.606 19 H 0.066 0.934 20 C 0.035 3.965 21 N -0.885 5.885 22 Si 1.091 2.909 23 H -0.288 1.288 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -13.142 20.943 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.292 3.708 4 O -0.372 6.372 5 C 0.048 3.952 6 H 0.132 0.868 7 C -0.149 4.149 8 C 0.017 3.983 9 H 0.111 0.889 10 O -0.289 6.289 11 C -0.068 4.068 12 C -0.045 4.045 13 N -0.341 5.341 14 C 0.344 3.656 15 O -0.382 6.382 16 C -0.271 4.271 17 S 0.112 5.888 18 C -0.755 4.755 19 H 0.085 0.915 20 C -0.175 4.175 21 N -0.519 5.519 22 Si 0.917 3.083 23 H -0.214 1.214 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.547 -12.567 18.453 22.470 hybrid contribution 0.390 -0.120 2.240 2.277 sum 2.937 -12.687 20.692 24.449 Atomic orbital electron populations 1.23254 0.76320 1.03506 1.02682 1.86475 1.23469 1.33332 1.84319 1.24098 0.92207 0.81705 0.72743 1.90696 1.66617 1.36316 1.43585 1.20972 0.86828 0.88789 0.98644 0.86797 1.22711 0.96621 1.02123 0.93493 1.23263 0.85808 0.92785 0.96486 0.88892 1.87979 1.13269 1.61144 1.66512 1.22858 0.86813 0.98460 0.98668 1.22924 0.96482 0.95902 0.89215 1.48227 1.55936 1.15683 1.14227 1.20038 0.78564 0.87695 0.79258 1.90712 1.38787 1.62742 1.45927 1.23259 1.04044 0.94501 1.05338 1.84852 1.74078 1.20690 1.09203 1.23752 1.44178 1.01136 1.06387 0.91536 1.26056 0.95411 1.04977 0.91071 1.70730 1.31273 1.18920 1.31020 0.83243 0.76173 0.73319 0.75568 1.21412 1.20889 1.20870 0.88116 0.92087 0.91673 0.87386 0.88700 0.93828 0.89267 0.93600 0.89217 0.89947 0.88920 0.88901 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.75 10.57 -39.27 -0.41 -5.17 16 3 C 0.45 6.97 6.41 36.01 0.23 7.20 16 4 O -0.49 -9.20 15.88 -18.75 -0.30 -9.50 16 5 C 0.15 2.06 3.37 -68.10 -0.23 1.83 16 6 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 7 C -0.11 -0.94 6.21 -24.89 -0.15 -1.09 16 8 C 0.08 0.63 3.49 -24.57 -0.09 0.54 16 9 H 0.09 0.49 7.90 -51.93 -0.41 0.08 16 10 O -0.37 -3.63 10.51 -35.23 -0.37 -4.00 16 11 C 0.03 0.20 10.89 101.05 1.10 1.30 16 12 C 0.08 0.87 6.42 -2.53 -0.02 0.86 16 13 N -0.60 -9.49 2.75 -164.32 -0.45 -9.94 16 14 C 0.56 11.56 7.26 -10.98 -0.08 11.48 16 15 O -0.51 -12.52 15.68 5.56 0.09 -12.43 16 16 C -0.12 -2.62 5.16 36.01 0.19 -2.44 16 17 S -0.11 -3.22 19.60 -107.50 -2.11 -5.32 16 18 C -0.61 -17.86 9.50 30.94 0.29 -17.57 16 19 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 20 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 21 N -0.89 -28.04 13.67 55.49 0.76 -27.28 16 22 Si 1.09 25.40 29.92 -169.99 -5.09 20.32 16 23 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.67 7.84 -51.93 -0.41 0.26 16 31 H 0.04 0.22 8.11 -51.93 -0.42 -0.20 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.31 8.13 -51.93 -0.42 -0.12 16 34 H 0.09 0.98 7.46 -51.93 -0.39 0.59 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.85 7.85 -51.92 -0.41 1.44 16 37 H 0.09 1.92 8.14 -51.92 -0.42 1.49 16 38 H 0.28 9.04 7.13 -40.82 -0.29 8.75 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -39.18 342.00 -5.85 -45.02 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.33 Total: -1.35 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 2.22 Total: 4.50 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.31 Total: -37.22 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.00 Total: -31.10 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.09 Total: 20.32 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.11 Total: -5.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -39.18 -5.85 -45.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377635391.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.387 kcal (2) G-P(sol) polarization free energy of solvation -39.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds