Wall clock time and date at job start Tue Mar 31 2020 03:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99919 * 2 1 4 4 O 1.20819 * 120.00154 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99632 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.99590 * 319.63951 * 5 3 2 7 7 C 1.54335 * 109.78033 * 80.80539 * 5 3 2 8 8 C 1.55154 * 103.01937 * 97.49431 * 7 5 3 9 9 H 1.08997 * 111.00512 * 277.23573 * 8 7 5 10 10 O 1.42902 * 111.03366 * 153.39487 * 8 7 5 11 11 C 1.42909 * 113.99628 * 156.33399 * 10 8 7 12 12 C 1.54912 * 101.58337 * 35.30879 * 8 7 5 13 13 N 1.47019 * 109.88215 * 198.54791 * 5 3 2 14 14 C 1.34779 * 125.65052 * 59.55757 * 13 5 3 15 15 O 1.21283 * 119.99753 * 359.71800 * 14 13 5 16 16 C 1.50701 * 119.99843 * 179.72014 * 14 13 5 17 17 S 1.81001 * 109.46896 * 179.97438 * 16 14 13 18 18 C 1.76192 * 100.00053 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00436 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99929 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00253 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99752 * 179.72153 * 20 18 17 23 23 H 1.48497 * 109.47323 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46790 * 120.00306 * 22 20 18 25 25 H 1.48501 * 109.47364 * 240.00335 * 22 20 18 26 26 H 1.08994 * 109.47574 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47207 * 300.00338 * 1 2 3 28 28 H 1.09003 * 109.47069 * 59.99949 * 1 2 3 29 29 H 1.08996 * 110.85133 * 339.02650 * 7 5 3 30 30 H 1.08999 * 110.66605 * 215.87941 * 7 5 3 31 31 H 1.09000 * 109.46940 * 299.99629 * 11 10 8 32 32 H 1.08996 * 109.47019 * 60.00130 * 11 10 8 33 33 H 1.09003 * 109.46789 * 179.97438 * 11 10 8 34 34 H 1.08993 * 110.36867 * 204.15352 * 12 8 7 35 35 H 1.09001 * 110.36730 * 81.82415 * 12 8 7 36 36 H 1.08998 * 109.46989 * 60.00366 * 16 14 13 37 37 H 1.08996 * 109.47123 * 299.99392 * 16 14 13 38 38 H 0.97000 * 120.00481 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9791 0.5150 0.6643 7 6 4.1006 1.0701 -1.4328 8 6 4.3290 2.5215 -1.9313 9 1 3.4011 2.9586 -2.2999 10 8 5.3465 2.5653 -2.9338 11 6 5.2586 3.6971 -3.8020 12 6 4.7975 3.2260 -0.6336 13 7 3.9969 2.6100 0.4403 14 6 3.7118 3.1751 1.6302 15 8 3.0413 2.5733 2.4422 16 6 4.2262 4.5546 1.9518 17 16 3.6784 5.0314 3.6097 18 6 4.4002 6.6348 3.7211 19 1 4.9761 7.0264 2.8956 20 6 4.2279 7.3952 4.8695 21 7 3.5256 6.9183 5.8754 22 14 4.9997 9.0921 4.9906 23 1 5.7384 9.3905 3.7375 24 1 3.9344 10.1072 5.1905 25 1 5.9393 9.1276 6.1400 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 3.3628 0.5610 -2.0528 30 1 5.0386 0.5152 -1.4181 31 1 4.2987 3.6852 -4.3182 32 1 5.3448 4.6121 -3.2160 33 1 6.0656 3.6572 -4.5336 34 1 4.5977 4.2960 -0.6895 35 1 5.8593 3.0456 -0.4661 36 1 3.8382 5.2660 1.2228 37 1 5.3155 4.5539 1.9149 38 1 3.4054 7.4496 6.6781 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377635392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:07 Heat of formation + Delta-G solvation = -150.182996 kcal Electronic energy + Delta-G solvation = -22997.629357 eV Core-core repulsion = 19353.512595 eV Total energy + Delta-G solvation = -3644.116762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.08045 -39.47646 -38.33304 -36.63677 -36.03157 -32.43139 -31.94527 -29.95389 -28.80283 -27.53628 -26.80088 -25.50098 -24.05326 -22.23485 -21.15930 -19.36124 -18.09305 -17.77984 -17.24192 -17.00431 -16.34212 -16.17172 -15.67557 -15.13320 -14.89702 -14.84153 -14.78875 -14.06526 -13.82314 -13.54246 -13.37142 -13.09581 -12.90558 -12.58194 -12.49466 -12.19182 -12.00395 -11.93825 -11.70525 -11.19191 -11.07024 -11.02150 -10.83634 -10.76354 -10.48345 -10.08009 -9.81204 -9.51201 -9.07460 -8.77060 -8.23683 -6.50412 -6.21722 -3.92391 2.09534 2.39229 2.77776 3.07573 3.20969 3.21763 3.29958 3.36644 3.61518 4.04929 4.17141 4.20426 4.57861 4.71354 4.80691 4.92899 5.02208 5.03395 5.07375 5.10611 5.13388 5.13657 5.32685 5.38611 5.42325 5.47371 5.49628 5.56077 5.59926 5.87263 6.07780 6.12493 6.31798 6.76570 7.42921 7.59847 7.73340 8.35283 8.43620 9.23558 10.85835 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.004071 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.055150 B = 6876.868595 C = 8298.936693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.453 3.547 4 O -0.484 6.484 5 C 0.152 3.848 6 H 0.117 0.883 7 C -0.112 4.112 8 C 0.073 3.927 9 H 0.083 0.917 10 O -0.372 6.372 11 C 0.027 3.973 12 C 0.082 3.918 13 N -0.609 5.609 14 C 0.557 3.443 15 O -0.504 6.504 16 C -0.144 4.144 17 S -0.058 6.058 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.279 1.279 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -12.258 -19.934 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.292 3.708 4 O -0.369 6.369 5 C 0.045 3.955 6 H 0.134 0.866 7 C -0.150 4.150 8 C 0.014 3.986 9 H 0.101 0.899 10 O -0.290 6.290 11 C -0.069 4.069 12 C -0.041 4.041 13 N -0.348 5.348 14 C 0.346 3.654 15 O -0.377 6.377 16 C -0.295 4.295 17 S 0.168 5.832 18 C -0.683 4.683 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.242 -12.904 -18.460 22.524 hybrid contribution 0.757 2.146 -0.825 2.421 sum 0.999 -10.757 -19.285 22.105 Atomic orbital electron populations 1.23254 0.76244 1.03509 1.02724 1.86463 1.23523 1.33293 1.84372 1.23998 0.92134 0.81768 0.72877 1.90699 1.66554 1.36267 1.43358 1.21029 0.87374 0.88928 0.98134 0.86557 1.22635 1.03635 0.96894 0.91807 1.23280 0.91397 0.95841 0.88038 0.89866 1.87901 1.51189 1.45649 1.44213 1.22874 1.01983 0.88514 0.93524 1.22797 0.96470 0.98826 0.86021 1.48302 1.54090 1.16175 1.16258 1.20127 0.78874 0.87515 0.78894 1.90719 1.37110 1.63446 1.46421 1.23493 1.04185 0.94353 1.07419 1.85432 1.69777 1.19834 1.08118 1.22896 1.38533 1.01878 1.04980 0.90839 1.24992 0.95073 0.98798 0.94681 1.70025 1.37573 1.37443 1.05223 0.86110 0.78888 0.82200 0.78250 1.19598 1.20567 1.20528 0.88120 0.91596 0.92104 0.88773 0.87401 0.93754 0.93426 0.89229 0.89661 0.89576 0.89111 0.89001 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -4.64 10.57 -39.27 -0.41 -5.05 16 3 C 0.45 6.80 6.30 36.01 0.23 7.03 16 4 O -0.48 -8.99 15.71 -19.36 -0.30 -9.29 16 5 C 0.15 1.93 3.42 -68.10 -0.23 1.70 16 6 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 7 C -0.11 -0.99 6.21 -24.89 -0.15 -1.14 16 8 C 0.07 0.71 3.49 -24.58 -0.09 0.62 16 9 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 10 O -0.37 -3.40 10.52 -35.23 -0.37 -3.77 16 11 C 0.03 0.19 10.89 101.05 1.10 1.29 16 12 C 0.08 0.94 6.42 -2.52 -0.02 0.93 16 13 N -0.61 -9.25 2.79 -164.31 -0.46 -9.71 16 14 C 0.56 11.24 7.22 -10.98 -0.08 11.16 16 15 O -0.50 -12.09 15.48 5.55 0.09 -12.01 16 16 C -0.14 -3.05 5.16 36.01 0.19 -2.86 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 22 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.09 0.71 7.82 -51.93 -0.41 0.30 16 30 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.27 8.11 -51.93 -0.42 -0.15 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.97 7.48 -51.93 -0.39 0.58 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.81 7.85 -51.92 -0.41 1.40 16 37 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -37.25 342.92 -5.97 -43.22 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.38 Total: -2.65 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 2.21 Total: 7.09 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.28 Total: -35.37 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.00 Total: -30.13 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.25 -5.97 -43.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377635392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.967 kcal (2) G-P(sol) polarization free energy of solvation -37.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds