Wall clock time and date at job start Tue Mar 31 2020 03:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00033 * 2 1 4 4 O 1.20829 * 119.99586 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00088 * 179.97438 * 3 2 1 6 6 H 1.09010 * 109.87278 * 319.56354 * 5 3 2 7 7 C 1.54320 * 110.01163 * 80.66124 * 5 3 2 8 8 C 1.55159 * 102.94349 * 141.68257 * 7 5 3 9 9 H 1.09000 * 111.00165 * 82.60756 * 8 7 5 10 10 O 1.42896 * 111.00681 * 206.42672 * 8 7 5 11 11 C 1.42901 * 114.00140 * 210.00124 * 10 8 7 12 12 C 1.55129 * 101.48377 * 324.33664 * 8 7 5 13 13 N 1.47018 * 109.88271 * 198.54844 * 5 3 2 14 14 C 1.34784 * 125.64722 * 61.45164 * 13 5 3 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 5 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 5 17 17 S 1.80996 * 109.47240 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00090 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00048 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99898 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99937 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46830 * 60.00444 * 22 20 18 24 24 H 1.48499 * 109.46800 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47147 * 300.00239 * 22 20 18 26 26 H 1.08998 * 109.47128 * 300.00008 * 1 2 3 27 27 H 1.09004 * 109.46745 * 59.99881 * 1 2 3 28 28 H 1.08997 * 109.47168 * 179.97438 * 1 2 3 29 29 H 1.08996 * 110.72172 * 260.04531 * 7 5 3 30 30 H 1.08998 * 110.72014 * 23.14414 * 7 5 3 31 31 H 1.08997 * 109.46811 * 299.99637 * 11 10 8 32 32 H 1.08999 * 109.46844 * 59.99513 * 11 10 8 33 33 H 1.08996 * 109.47035 * 179.97438 * 11 10 8 34 34 H 1.09005 * 110.49746 * 278.45477 * 12 8 7 35 35 H 1.08997 * 110.34301 * 156.05884 * 12 8 7 36 36 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 37 37 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 38 38 H 0.97005 * 120.00078 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9769 0.5152 0.6658 7 6 4.1066 1.0673 -1.4300 8 6 5.2895 2.0686 -1.5034 9 1 6.1893 1.6436 -1.0587 10 8 5.5316 2.4775 -2.8511 11 6 6.8959 2.8040 -3.1233 12 6 4.7479 3.2493 -0.6555 13 7 3.9968 2.6101 0.4403 14 6 3.7421 3.1608 1.6438 15 8 3.1063 2.5427 2.4712 16 6 4.2464 4.5451 1.9610 17 16 3.7456 4.9997 3.6398 18 6 4.4473 6.6128 3.7422 19 1 4.9904 7.0197 2.9021 20 6 4.3011 7.3608 4.9021 21 7 3.6386 6.8651 5.9258 22 14 5.0444 9.0712 5.0103 23 1 4.4596 9.9329 3.9516 24 1 4.7488 9.6559 6.3430 25 1 6.5148 8.9847 4.8222 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.4582 0.0445 -1.5647 30 1 3.3441 1.3121 -2.1694 31 1 7.2091 3.6241 -2.4772 32 1 7.5227 1.9326 -2.9340 33 1 6.9965 3.1040 -4.1664 34 1 4.0865 3.8766 -1.2531 35 1 5.5731 3.8390 -0.2563 36 1 5.3340 4.5609 1.8889 37 1 3.8250 5.2568 1.2512 38 1 3.5361 7.3881 6.7363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377635394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:15 Heat of formation + Delta-G solvation = -150.302701 kcal Electronic energy + Delta-G solvation = -22907.243396 eV Core-core repulsion = 19263.121443 eV Total energy + Delta-G solvation = -3644.121953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02202 -39.49182 -38.33931 -36.62903 -36.03448 -32.42689 -31.92670 -29.99363 -28.78941 -27.52400 -26.78551 -25.49506 -24.12722 -21.98566 -21.32437 -19.32011 -18.17345 -17.75814 -17.05747 -16.95629 -16.51292 -16.14322 -15.57273 -15.20704 -15.06486 -14.81239 -14.75806 -14.15585 -13.80639 -13.43923 -13.36525 -13.06147 -12.91820 -12.56240 -12.27994 -12.21361 -12.05215 -11.89296 -11.76789 -11.29448 -11.04395 -11.03362 -10.81263 -10.77078 -10.45207 -10.07459 -9.82686 -9.51762 -9.05534 -8.76249 -8.24303 -6.50123 -6.20975 -3.91937 2.11745 2.40016 2.76144 3.09551 3.21146 3.24093 3.28887 3.38292 3.64349 4.04372 4.15870 4.20977 4.54667 4.68473 4.82150 4.90687 5.01625 5.04275 5.05042 5.07331 5.14074 5.14917 5.32890 5.37295 5.43129 5.46781 5.53538 5.58797 5.61438 5.87654 6.07808 6.13153 6.34063 6.76745 7.43361 7.59651 7.75962 8.35345 8.43405 9.23966 10.86466 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.004101 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.990129 B = 6825.668051 C = 8422.170972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.454 3.546 4 O -0.484 6.484 5 C 0.152 3.848 6 H 0.115 0.885 7 C -0.115 4.115 8 C 0.078 3.922 9 H 0.089 0.911 10 O -0.372 6.372 11 C 0.028 3.972 12 C 0.082 3.918 13 N -0.608 5.608 14 C 0.557 3.443 15 O -0.505 6.505 16 C -0.144 4.144 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -13.589 -18.850 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.293 3.707 4 O -0.368 6.368 5 C 0.045 3.955 6 H 0.132 0.868 7 C -0.152 4.152 8 C 0.019 3.981 9 H 0.107 0.893 10 O -0.290 6.290 11 C -0.069 4.069 12 C -0.041 4.041 13 N -0.348 5.348 14 C 0.346 3.654 15 O -0.378 6.378 16 C -0.295 4.295 17 S 0.169 5.831 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.597 -14.110 -17.463 22.601 hybrid contribution 1.111 1.953 -0.707 2.356 sum 3.708 -12.157 -18.171 22.175 Atomic orbital electron populations 1.23254 0.76258 1.03486 1.02738 1.86460 1.23525 1.33307 1.84381 1.23950 0.92061 0.81764 0.72884 1.90708 1.66494 1.36298 1.43326 1.20991 0.87585 0.88816 0.98084 0.86762 1.22658 0.98274 1.00968 0.93345 1.23289 0.97891 0.93644 0.83300 0.89260 1.87924 1.27375 1.87008 1.26703 1.22886 0.82266 0.99574 1.02141 1.22816 0.96630 0.96082 0.88594 1.48303 1.56157 1.15906 1.14434 1.20132 0.78584 0.87696 0.78998 1.90718 1.38262 1.62728 1.46048 1.23498 1.03997 0.94354 1.07628 1.85423 1.72575 1.19364 1.05742 1.22814 1.40592 1.01503 1.03501 0.90939 1.24984 0.95045 0.98798 0.94664 1.70008 1.38576 1.37608 1.04092 0.86220 0.79412 0.82315 0.77531 1.19914 1.20792 1.19919 0.91626 0.92063 0.88135 0.87877 0.88898 0.93438 0.93659 0.89307 0.89937 0.89328 0.89114 0.88973 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.74 10.57 -39.27 -0.41 -5.16 16 3 C 0.45 7.01 6.40 36.00 0.23 7.24 16 4 O -0.48 -9.30 15.86 -18.75 -0.30 -9.59 16 5 C 0.15 1.94 3.36 -68.11 -0.23 1.71 16 6 H 0.11 1.32 8.14 -51.92 -0.42 0.90 16 7 C -0.11 -1.01 6.20 -24.90 -0.15 -1.17 16 8 C 0.08 0.68 3.56 -24.46 -0.09 0.59 16 9 H 0.09 0.62 7.83 -51.93 -0.41 0.22 16 10 O -0.37 -3.36 10.51 -35.23 -0.37 -3.74 16 11 C 0.03 0.17 10.85 101.05 1.10 1.27 16 12 C 0.08 0.95 6.43 -2.41 -0.02 0.94 16 13 N -0.61 -9.29 2.76 -164.19 -0.45 -9.74 16 14 C 0.56 11.25 7.26 -10.98 -0.08 11.17 16 15 O -0.51 -12.11 15.65 5.56 0.09 -12.02 16 16 C -0.14 -3.06 5.16 36.01 0.19 -2.87 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 21 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 22 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.88 7.85 -51.93 -0.41 0.47 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.04 0.22 8.12 -51.93 -0.42 -0.20 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.93 7.48 -51.93 -0.39 0.54 16 36 H 0.09 1.71 7.85 -51.91 -0.41 1.31 16 37 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 38 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -37.65 343.29 -5.95 -43.59 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.38 Total: -2.76 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 2.21 Total: 7.24 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.28 Total: -35.42 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.00 Total: -30.51 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.65 -5.95 -43.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377635394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.712 kcal (2) G-P(sol) polarization free energy of solvation -37.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds