Wall clock time and date at job start Tue Mar 31 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 117.00033 * 2 1 4 4 O 1.20829 * 119.99586 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00088 * 179.97438 * 3 2 1 6 6 H 1.09010 * 109.87278 * 319.56354 * 5 3 2 7 7 C 1.54320 * 110.01163 * 80.66124 * 5 3 2 8 8 C 1.55159 * 102.94349 * 141.68257 * 7 5 3 9 9 H 1.09000 * 111.00165 * 82.60756 * 8 7 5 10 10 O 1.42896 * 111.00681 * 206.42672 * 8 7 5 11 11 C 1.42901 * 114.00140 * 210.00124 * 10 8 7 12 12 C 1.55129 * 101.48377 * 324.33664 * 8 7 5 13 13 N 1.47018 * 109.88271 * 198.54844 * 5 3 2 14 14 C 1.34784 * 125.64722 * 61.45164 * 13 5 3 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 5 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 5 17 17 S 1.80996 * 109.47240 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00090 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00086 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00048 * 179.97438 * 18 17 16 21 21 N 1.31626 * 119.99898 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99937 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46830 * 60.00444 * 22 20 18 24 24 H 1.48499 * 109.46800 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47147 * 300.00239 * 22 20 18 26 26 H 1.08998 * 109.47128 * 300.00008 * 1 2 3 27 27 H 1.09004 * 109.46745 * 59.99881 * 1 2 3 28 28 H 1.08997 * 109.47168 * 179.97438 * 1 2 3 29 29 H 1.08996 * 110.72172 * 260.04531 * 7 5 3 30 30 H 1.08998 * 110.72014 * 23.14414 * 7 5 3 31 31 H 1.08997 * 109.46811 * 299.99637 * 11 10 8 32 32 H 1.08999 * 109.46844 * 59.99513 * 11 10 8 33 33 H 1.08996 * 109.47035 * 179.97438 * 11 10 8 34 34 H 1.09005 * 110.49746 * 278.45477 * 12 8 7 35 35 H 1.08997 * 110.34301 * 156.05884 * 12 8 7 36 36 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 37 37 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 38 38 H 0.97005 * 120.00078 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9769 0.5152 0.6658 7 6 4.1066 1.0673 -1.4300 8 6 5.2895 2.0686 -1.5034 9 1 6.1893 1.6436 -1.0587 10 8 5.5316 2.4775 -2.8511 11 6 6.8959 2.8040 -3.1233 12 6 4.7479 3.2493 -0.6555 13 7 3.9968 2.6101 0.4403 14 6 3.7421 3.1608 1.6438 15 8 3.1063 2.5427 2.4712 16 6 4.2464 4.5451 1.9610 17 16 3.7456 4.9997 3.6398 18 6 4.4473 6.6128 3.7422 19 1 4.9904 7.0197 2.9021 20 6 4.3011 7.3608 4.9021 21 7 3.6386 6.8651 5.9258 22 14 5.0444 9.0712 5.0103 23 1 4.4596 9.9329 3.9516 24 1 4.7488 9.6559 6.3430 25 1 6.5148 8.9847 4.8222 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 4.4582 0.0445 -1.5647 30 1 3.3441 1.3121 -2.1694 31 1 7.2091 3.6241 -2.4772 32 1 7.5227 1.9326 -2.9340 33 1 6.9965 3.1040 -4.1664 34 1 4.0865 3.8766 -1.2531 35 1 5.5731 3.8390 -0.2563 36 1 5.3340 4.5609 1.8889 37 1 3.8250 5.2568 1.2512 38 1 3.5361 7.3881 6.7363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377635394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:14 Heat of formation + Delta-G solvation = -177.663550 kcal Electronic energy + Delta-G solvation = -22908.429851 eV Core-core repulsion = 19263.121443 eV Total energy + Delta-G solvation = -3645.308409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.18256 -40.68264 -39.39671 -37.74954 -37.14788 -34.60860 -33.16085 -30.93157 -30.27724 -28.43881 -27.69879 -27.33162 -25.17341 -22.98480 -22.33443 -20.66875 -19.70418 -19.18515 -18.46963 -17.88142 -17.60742 -17.24625 -16.90168 -16.67183 -16.40060 -16.17315 -15.80192 -15.56130 -14.97689 -14.66037 -14.48233 -14.35735 -14.15715 -13.93751 -13.65703 -13.21142 -13.14789 -12.95537 -12.87217 -12.68173 -12.63676 -12.56287 -12.02609 -11.89042 -11.78069 -11.55147 -11.20742 -11.14549 -10.64396 -10.33291 -10.01394 -8.71611 -8.36340 -6.16011 0.90998 1.14289 1.28896 1.41439 1.43663 1.52772 1.70610 1.91537 2.25069 2.71652 2.97905 3.17283 3.29078 3.34427 3.70246 3.73412 3.88472 4.05633 4.15267 4.18569 4.24110 4.26336 4.36604 4.48278 4.60245 4.61939 4.66723 4.68557 4.77437 4.86270 4.97411 5.01615 5.24137 5.39242 6.08167 6.17687 6.19318 6.58503 6.92947 7.04359 8.72933 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.014633 B = 0.004101 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.990129 B = 6825.668051 C = 8422.170972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.450 3.550 4 O -0.533 6.533 5 C 0.144 3.856 6 H 0.131 0.869 7 C -0.103 4.103 8 C 0.091 3.909 9 H 0.117 0.883 10 O -0.387 6.387 11 C 0.020 3.980 12 C 0.071 3.929 13 N -0.601 5.601 14 C 0.555 3.445 15 O -0.554 6.554 16 C -0.119 4.119 17 S -0.148 6.148 18 C -0.548 4.548 19 H 0.084 0.916 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.258 1.258 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.188 -13.976 -21.144 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.292 3.708 4 O -0.421 6.421 5 C 0.039 3.961 6 H 0.149 0.851 7 C -0.140 4.140 8 C 0.032 3.968 9 H 0.135 0.865 10 O -0.305 6.305 11 C -0.076 4.076 12 C -0.051 4.051 13 N -0.338 5.338 14 C 0.344 3.656 15 O -0.431 6.431 16 C -0.270 4.270 17 S 0.079 5.921 18 C -0.695 4.695 19 H 0.102 0.898 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.183 1.183 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.160 0.840 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.118 0.882 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.793 -14.536 -19.829 25.049 hybrid contribution 0.398 1.962 -0.134 2.007 sum 5.191 -12.573 -19.963 24.157 Atomic orbital electron populations 1.23540 0.74904 1.05932 1.01988 1.86459 1.24889 1.32079 1.83675 1.24552 0.93187 0.81621 0.71413 1.90688 1.67708 1.37852 1.45843 1.21447 0.86080 0.87615 1.00992 0.85116 1.22731 0.98000 1.03272 0.90007 1.23228 0.98641 0.91846 0.83124 0.86487 1.87918 1.29205 1.87032 1.26329 1.23096 0.81122 1.00495 1.02863 1.23138 0.96493 0.97587 0.87903 1.48139 1.55138 1.17032 1.13487 1.19861 0.78313 0.87192 0.80248 1.90692 1.40577 1.63724 1.48154 1.23292 1.05465 0.95490 1.02721 1.85604 1.73938 1.20603 1.11968 1.23156 1.40701 1.01452 1.04230 0.89808 1.26148 0.95226 1.03654 0.93978 1.70181 1.40118 1.39636 1.04870 0.84983 0.79037 0.76034 0.77807 1.18828 1.20308 1.18267 0.93706 0.91565 0.84061 0.83970 0.89579 0.93201 0.91912 0.88378 0.90879 0.88008 0.86466 0.88196 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -9.07 10.57 -51.45 -0.54 -9.62 16 3 C 0.45 13.86 6.40 71.23 0.46 14.31 16 4 O -0.53 -21.11 15.86 21.96 0.35 -20.77 16 5 C 0.14 3.47 3.36 44.59 0.15 3.62 16 6 H 0.13 2.76 8.14 -2.38 -0.02 2.74 16 7 C -0.10 -1.49 6.20 31.78 0.20 -1.30 16 8 C 0.09 1.28 3.56 32.06 0.11 1.39 16 9 H 0.12 1.07 7.83 -2.39 -0.02 1.05 16 10 O -0.39 -5.75 10.51 -148.98 -1.57 -7.31 16 11 C 0.02 0.18 10.85 113.37 1.23 1.41 16 12 C 0.07 1.51 6.43 86.93 0.56 2.07 16 13 N -0.60 -17.81 2.76 -791.76 -2.18 -19.99 16 14 C 0.55 22.70 7.26 87.66 0.64 23.33 16 15 O -0.55 -27.59 15.65 -3.03 -0.05 -27.64 16 16 C -0.12 -5.06 5.16 71.24 0.37 -4.69 16 17 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 18 C -0.55 -31.86 9.50 67.95 0.65 -31.21 16 19 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 20 C 0.01 0.85 5.49 84.86 0.47 1.32 16 21 N -0.91 -56.81 13.22 21.65 0.29 -56.53 16 22 Si 1.00 43.93 29.55 68.60 2.03 45.95 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 27 H 0.07 1.30 8.13 -2.38 -0.02 1.28 16 28 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.43 7.85 -2.39 -0.02 1.41 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.36 8.12 -2.39 -0.02 0.34 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 35 H 0.10 1.88 7.48 -2.39 -0.02 1.86 16 36 H 0.12 4.31 7.85 -2.39 -0.02 4.29 16 37 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 38 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 Total: -1.00 -86.21 343.29 4.24 -81.97 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 1.06 Total: 11.57 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.02 Total: 12.06 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -1.90 Total: -76.52 kcal Atomic # 8 Polarization: -63.53 SS G_CDS: -1.81 Total: -65.34 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -86.21 4.24 -81.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377635394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.695 kcal (2) G-P(sol) polarization free energy of solvation -86.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds