Wall clock time and date at job start Tue Mar 31 2020 03:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 108.57590 * 2 1 4 4 O 1.42100 * 108.57931 * 228.97287 * 2 1 3 5 5 C 1.81406 * 101.92107 * 114.48254 * 2 1 3 6 6 C 1.50698 * 112.85140 * 305.61204 * 5 2 1 7 7 O 1.21281 * 120.00070 * 119.14016 * 6 5 2 8 8 N 1.34785 * 119.99762 * 298.87190 * 6 5 2 9 9 C 1.47067 * 136.05794 * 354.93044 * 8 6 5 10 10 C 1.53234 * 88.08297 * 207.21167 * 9 8 6 11 11 O 1.42898 * 114.01840 * 87.71735 * 10 9 8 12 12 C 1.50702 * 114.32283 * 220.47315 * 10 9 8 13 13 H 1.08001 * 119.99845 * 93.76198 * 12 10 9 14 14 C 1.37880 * 119.99882 * 273.75580 * 12 10 9 15 15 N 1.31509 * 119.99971 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 119.99835 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47010 * 90.00200 * 16 14 12 18 18 H 1.48500 * 109.46721 * 210.00136 * 16 14 12 19 19 H 1.48504 * 109.47013 * 329.99720 * 16 14 12 20 20 C 1.47069 * 136.05571 * 175.31299 * 8 6 5 21 21 C 1.53782 * 113.68704 * 76.87926 * 5 2 1 22 22 C 1.53785 * 87.07932 * 139.99123 * 21 5 2 23 23 C 1.53777 * 113.61324 * 174.41125 * 5 2 1 24 24 H 1.09002 * 109.47286 * 306.31618 * 1 2 3 25 25 H 1.08997 * 109.46857 * 66.31865 * 1 2 3 26 26 H 1.08996 * 109.46853 * 186.31784 * 1 2 3 27 27 H 1.08998 * 113.46836 * 321.94669 * 9 8 6 28 28 H 1.09001 * 113.45944 * 92.37885 * 9 8 6 29 29 H 0.96706 * 113.99935 * 86.38900 * 11 10 9 30 30 H 0.96999 * 120.00236 * 179.97438 * 15 14 12 31 31 H 1.08993 * 113.46567 * 267.61865 * 20 8 6 32 32 H 1.09000 * 113.46457 * 38.05628 * 20 8 6 33 33 H 1.09006 * 113.60995 * 254.53787 * 21 5 2 34 34 H 1.08993 * 113.61477 * 25.44262 * 21 5 2 35 35 H 1.08994 * 113.61368 * 220.01831 * 22 21 5 36 36 H 1.08996 * 113.68772 * 89.12463 * 22 21 5 37 37 H 1.09004 * 113.61830 * 334.48937 * 23 5 2 38 38 H 1.09004 * 113.61288 * 105.30479 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 1.5184 -0.0146 2.7564 7 8 0.7295 -0.6026 3.4654 8 7 1.7998 1.2823 2.9922 9 6 2.7326 2.2797 2.4465 10 6 2.6936 2.9848 3.8064 11 8 3.6541 2.4940 4.7438 12 6 2.6507 4.4890 3.7248 13 1 1.7016 5.0040 3.7441 14 6 3.8232 5.2076 3.6255 15 7 4.9789 4.5804 3.6015 16 14 3.7701 7.0722 3.5250 17 1 3.8270 7.6435 4.8944 18 1 4.9311 7.5586 2.7370 19 1 2.5102 7.4965 2.8633 20 6 1.3138 2.3208 3.9132 21 6 2.0036 -2.2616 1.6572 22 6 3.2814 -2.3143 2.5112 23 6 3.6880 -0.9902 1.8434 24 1 -0.3634 0.6086 0.8281 25 1 -0.3633 0.4128 -0.9411 26 1 -0.3633 -1.0214 0.1131 27 1 3.7118 1.8691 2.2000 28 1 2.3081 2.8737 1.6371 29 1 4.5222 2.9144 4.6739 30 1 5.8037 5.0860 3.5313 31 1 0.5076 2.9258 3.4986 32 1 1.0889 1.9449 4.9114 33 1 1.1078 -2.5782 2.1916 34 1 2.1088 -2.7411 0.6841 35 1 3.9381 -3.1481 2.2634 36 1 3.0966 -2.2247 3.5817 37 1 4.2538 -1.1220 0.9210 38 1 4.1526 -0.2794 2.5269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408316973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:09 Heat of formation + Delta-G solvation = -79.805039 kcal Electronic energy + Delta-G solvation = -24648.784875 eV Core-core repulsion = 21007.719930 eV Total energy + Delta-G solvation = -3641.064945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.39164 -38.61773 -37.06890 -36.57565 -35.99941 -34.04938 -32.17818 -29.82001 -29.21653 -26.82179 -25.87717 -25.17008 -24.88079 -21.39359 -19.78773 -19.29943 -17.91719 -17.79959 -17.05456 -16.26643 -16.13102 -15.87619 -15.52703 -15.11805 -14.72271 -14.21114 -14.17087 -13.42599 -13.38422 -13.23618 -12.89857 -12.66495 -12.54242 -12.45145 -12.23907 -12.15038 -12.02818 -11.82996 -11.49805 -11.13103 -11.06191 -11.03151 -10.89697 -10.60180 -10.46475 -10.23117 -10.11854 -9.70131 -9.26100 -8.76837 -8.42644 -7.93306 -6.38671 -4.48187 -0.08392 2.47796 2.97903 3.14980 3.17298 3.25175 3.28119 3.55980 3.76188 4.19897 4.25045 4.30506 4.61605 4.64100 4.74353 4.86706 4.94022 5.19520 5.42091 5.55550 5.59500 5.62667 5.83856 5.87353 5.92544 5.95196 6.09501 6.24794 6.35557 6.55161 6.69509 6.82428 7.15845 7.64907 7.80500 8.27910 8.48418 8.54771 9.22434 9.47928 10.68683 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.005423 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.282576 B = 5161.774488 C = 5540.368365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.424 3.576 3 O -0.912 6.912 4 O -0.936 6.936 5 C -0.594 4.594 6 C 0.569 3.431 7 O -0.544 6.544 8 N -0.629 5.629 9 C 0.077 3.923 10 C 0.237 3.763 11 O -0.573 6.573 12 C -0.533 4.533 13 H 0.073 0.927 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.910 3.090 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.108 3.892 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.098 4.098 24 H 0.129 0.871 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.394 0.606 30 H 0.274 0.726 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.441 -9.220 -6.151 11.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.605 3.395 3 O -0.909 6.909 4 O -0.933 6.933 5 C -0.685 4.685 6 C 0.355 3.645 7 O -0.424 6.424 8 N -0.362 5.362 9 C -0.045 4.045 10 C 0.195 3.805 11 O -0.387 6.387 12 C -0.571 4.571 13 H 0.091 0.909 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.737 3.263 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.014 4.014 21 C -0.138 4.138 22 C -0.160 4.160 23 C -0.137 4.137 24 H 0.148 0.852 25 H 0.149 0.851 26 H 0.148 0.852 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.251 0.749 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.607 -9.764 -6.310 12.505 hybrid contribution -0.044 1.061 0.182 1.078 sum -4.651 -8.703 -6.127 11.616 Atomic orbital electron populations 1.30199 1.26487 1.11783 1.11722 1.07958 0.78814 0.76102 0.76631 1.93676 1.78712 1.32827 1.85645 1.93572 1.79582 1.67685 1.52472 1.31465 1.08652 1.09128 1.19296 1.18053 0.81692 0.80648 0.84136 1.90635 1.37409 1.65852 1.48453 1.49829 1.40033 1.07360 1.38956 1.24488 0.91890 0.86480 1.01661 1.19547 0.85019 0.91153 0.84797 1.86026 1.26968 1.67207 1.58458 1.21378 0.93855 0.90076 1.51771 0.90883 1.25066 0.95041 0.99908 0.92981 1.69247 0.97995 1.36587 1.49903 0.86301 0.78048 0.83704 0.78284 1.20322 1.20882 1.19502 1.23429 0.99465 0.85450 0.93017 1.22685 1.01635 0.87103 1.02365 1.22720 0.96305 0.96749 1.00273 1.22669 0.88282 0.99678 1.03026 0.85213 0.85108 0.85209 0.91624 0.87813 0.74887 0.91558 0.89206 0.91274 0.88375 0.87763 0.90340 0.89173 0.88279 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -7.21 10.26 101.05 1.04 -6.17 16 2 S 2.42 34.60 4.94 -107.50 -0.53 34.07 16 3 O -0.91 -16.01 14.59 -57.83 -0.84 -16.85 16 4 O -0.94 -14.36 17.37 -57.83 -1.00 -15.36 16 5 C -0.59 -8.90 0.87 -90.96 -0.08 -8.98 16 6 C 0.57 10.55 5.96 -10.98 -0.07 10.49 16 7 O -0.54 -11.16 16.68 5.56 0.09 -11.07 16 8 N -0.63 -12.71 3.68 -185.37 -0.68 -13.39 16 9 C 0.08 1.68 5.71 -8.64 -0.05 1.63 16 10 C 0.24 5.61 1.57 -91.39 -0.14 5.47 16 11 O -0.57 -14.51 13.53 -35.23 -0.48 -14.98 16 12 C -0.53 -13.23 8.69 -34.44 -0.30 -13.53 16 13 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.07 1.81 5.40 -17.82 -0.10 1.71 16 15 N -0.90 -22.72 11.01 55.43 0.61 -22.11 16 16 Si 0.91 19.45 29.54 -169.99 -5.02 14.43 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 C 0.11 2.27 8.04 -8.50 -0.07 2.20 16 21 C -0.10 -1.22 7.06 -25.92 -0.18 -1.40 16 22 C -0.12 -1.53 7.80 -25.92 -0.20 -1.73 16 23 C -0.10 -1.39 7.22 -25.92 -0.19 -1.58 16 24 H 0.13 1.52 7.77 -51.92 -0.40 1.11 16 25 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.45 7.43 -51.93 -0.39 1.06 16 28 H 0.10 2.28 6.93 -51.93 -0.36 1.92 16 29 H 0.39 10.14 6.33 45.56 0.29 10.43 16 30 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.09 1.69 8.10 -51.93 -0.42 1.26 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.10 1.21 7.34 -51.93 -0.38 0.83 16 34 H 0.10 1.05 7.50 -51.93 -0.39 0.66 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.10 1.56 7.41 -51.93 -0.38 1.18 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -30.41 324.99 -7.81 -38.22 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -4.52 Total: 14.05 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -0.34 Total: -11.90 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.07 Total: -35.50 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -2.23 Total: -58.27 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 34.60 SS G_CDS: -0.53 Total: 34.07 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.41 -7.81 -38.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408316973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.587 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds