Wall clock time and date at job start Tue Mar 31 2020 03:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 S 1.81391 * 109.47235 * 180.02562 * 10 9 7 12 12 O 1.42104 * 110.54521 * 291.62885 * 11 10 9 13 13 O 1.42108 * 110.54484 * 68.37707 * 11 10 9 14 14 N 1.65597 * 104.45133 * 180.02562 * 11 10 9 15 15 C 1.46820 * 120.12810 * 269.72132 * 14 11 10 16 16 C 1.53263 * 109.29421 * 236.31137 * 15 14 11 17 17 N 1.47045 * 107.41754 * 314.03381 * 16 15 14 18 18 C 1.33406 * 128.04930 * 234.34867 * 17 16 15 19 19 O 1.21584 * 123.14464 * 350.58555 * 18 17 16 20 20 N 1.34138 * 113.70613 * 170.59647 * 18 17 16 21 21 C 1.47180 * 109.19489 * 3.05497 * 20 18 17 22 22 C 1.47820 * 122.78622 * 51.83754 * 17 16 15 23 23 H 1.08996 * 112.40123 * 69.48972 * 22 17 16 24 24 C 1.47090 * 120.13305 * 90.00222 * 14 11 10 25 25 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 27 27 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 28 28 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 29 29 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 30 30 H 1.09001 * 109.54444 * 356.22626 * 15 14 11 31 31 H 1.09007 * 109.53783 * 116.47960 * 15 14 11 32 32 H 1.09003 * 109.96317 * 194.48736 * 16 15 14 33 33 H 1.08997 * 109.80807 * 73.48416 * 16 15 14 34 34 H 0.96999 * 125.40323 * 183.04412 * 20 18 17 35 35 H 1.08998 * 110.54910 * 243.54216 * 21 20 18 36 36 H 1.08993 * 110.54871 * 120.73056 * 21 20 18 37 37 H 1.09001 * 109.74279 * 242.26757 * 24 14 11 38 38 H 1.09004 * 109.74262 * 2.92490 * 24 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4201 1.2354 13 8 0.6649 -5.4194 -1.2386 14 7 2.5207 -6.3926 -0.0005 15 6 3.0434 -6.9130 -1.2700 16 6 2.8773 -8.4363 -1.2996 17 7 3.3359 -8.9544 -0.0021 18 6 4.2536 -9.8944 0.2300 19 8 4.7354 -10.5842 -0.6477 20 7 4.5949 -10.0074 1.5223 21 6 3.7765 -9.0815 2.3217 22 6 2.8428 -8.4297 1.2888 23 1 1.8003 -8.6898 1.4720 24 6 3.0469 -6.9098 1.2720 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6042 -0.8905 29 1 2.8721 -3.6043 0.8895 30 1 2.4916 -6.4715 -2.0999 31 1 4.1005 -6.6624 -1.3591 32 1 3.4803 -8.8609 -2.1023 33 1 1.8282 -8.6906 -1.4503 34 1 5.2733 -10.6048 1.8742 35 1 4.4051 -8.3289 2.7979 36 1 3.1997 -9.6275 3.0681 37 1 4.1094 -6.6801 1.3516 38 1 2.5089 -6.4562 2.1044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408390021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:41 Heat of formation + Delta-G solvation = -75.716676 kcal Electronic energy + Delta-G solvation = -23435.918182 eV Core-core repulsion = 19827.323273 eV Total energy + Delta-G solvation = -3608.594909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.46460 -37.68552 -36.83586 -36.04810 -35.54957 -33.95352 -33.44623 -31.48758 -31.22438 -28.35273 -25.75218 -25.45708 -23.63067 -22.01297 -21.65092 -20.49026 -18.49609 -17.89469 -17.63965 -16.90962 -16.51074 -15.98985 -15.92304 -15.53814 -15.02926 -14.68582 -14.61986 -14.54890 -14.20516 -13.61454 -13.55051 -13.40611 -12.59588 -12.57109 -12.33907 -12.09217 -11.83859 -11.83203 -11.70588 -11.30961 -11.16355 -11.11321 -11.03069 -10.50134 -10.44360 -10.36423 -9.91962 -9.68589 -9.47068 -9.19874 -8.55789 -8.55013 -6.17285 -4.23403 0.59101 2.29604 2.85863 2.95018 3.23844 3.29111 3.30600 3.61585 4.02393 4.17337 4.26500 4.33230 4.45578 4.51326 4.82098 4.84998 4.96594 5.05950 5.10949 5.17854 5.23459 5.38949 5.49599 5.54751 5.58431 5.64541 5.78511 5.89269 6.40363 6.40882 6.50263 6.83459 7.22870 7.28683 7.29177 7.75203 8.11590 8.39488 8.79775 9.41776 10.93629 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.030524 B = 0.003430 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.105584 B = 8161.195076 C = 8272.120305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.586 4.586 11 S 2.586 3.414 12 O -0.962 6.962 13 O -0.960 6.960 14 N -1.005 6.005 15 C 0.101 3.899 16 C 0.140 3.860 17 N -0.625 5.625 18 C 0.704 3.296 19 O -0.591 6.591 20 N -0.745 5.745 21 C 0.098 3.902 22 C 0.103 3.897 23 H 0.104 0.896 24 C 0.111 3.889 25 H 0.266 0.734 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.429 0.571 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.119 -16.706 4.335 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.720 4.720 11 S 2.686 3.314 12 O -0.952 6.952 13 O -0.951 6.951 14 N -0.841 5.841 15 C -0.026 4.026 16 C 0.016 3.984 17 N -0.364 5.364 18 C 0.405 3.595 19 O -0.470 6.470 20 N -0.407 5.407 21 C -0.028 4.028 22 C -0.003 4.003 23 H 0.122 0.878 24 C -0.015 4.015 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.270 0.730 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.188 -17.115 3.696 18.927 hybrid contribution 1.298 1.082 0.321 1.721 sum 8.487 -16.032 4.017 18.580 Atomic orbital electron populations 1.69935 1.06124 1.27403 1.49341 1.25062 0.94975 0.99551 0.94816 0.86524 0.79503 0.82485 0.78732 1.20051 1.21038 1.20066 1.20954 0.93024 0.89741 1.52471 0.92090 1.18971 0.92678 0.90558 0.98893 1.30476 1.13627 1.17760 1.10129 1.05896 0.74834 0.76483 0.74214 1.93531 1.71118 1.85211 1.45331 1.93541 1.71107 1.85171 1.45234 1.57891 1.59494 1.56062 1.10611 1.21809 1.00634 0.94013 0.86114 1.21801 1.00739 0.92957 0.82869 1.47263 1.42674 1.39651 1.06774 1.15706 0.79748 0.80749 0.83339 1.90955 1.60519 1.48921 1.46583 1.45184 1.43204 1.45478 1.06831 1.22339 0.93247 0.93187 0.94046 1.22595 0.99627 0.94902 0.83209 0.87782 1.21908 1.00591 0.92471 0.86559 0.92408 0.94830 0.94839 0.86186 0.86220 0.87111 0.90797 0.87982 0.90395 0.72995 0.89490 0.89424 0.90475 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -10.43 6.12 37.16 0.23 -10.21 16 11 S 2.59 42.09 5.43 -107.50 -0.58 41.50 16 12 O -0.96 -17.77 16.57 -57.54 -0.95 -18.72 16 13 O -0.96 -18.21 16.55 -57.54 -0.95 -19.16 16 14 N -1.01 -11.95 3.17 -113.34 -0.36 -12.31 16 15 C 0.10 1.06 6.52 -3.73 -0.02 1.03 16 16 C 0.14 1.47 7.08 -3.61 -0.03 1.44 16 17 N -0.62 -6.88 2.98 -170.19 -0.51 -7.38 16 18 C 0.70 8.71 8.64 -88.71 -0.77 7.95 16 19 O -0.59 -9.71 17.61 5.29 0.09 -9.62 16 20 N -0.74 -6.19 6.39 -64.90 -0.41 -6.61 16 21 C 0.10 0.59 7.66 -3.29 -0.03 0.56 16 22 C 0.10 0.90 4.14 -66.64 -0.28 0.63 16 23 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 24 C 0.11 1.05 5.83 -3.53 -0.02 1.03 16 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.12 1.93 8.14 -51.92 -0.42 1.50 16 29 H 0.12 1.89 8.14 -51.92 -0.42 1.46 16 30 H 0.11 1.17 6.83 -51.93 -0.35 0.82 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.10 1.03 7.84 -51.93 -0.41 0.62 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.43 2.74 8.96 -40.82 -0.37 2.37 16 35 H 0.09 0.37 7.56 -51.93 -0.39 -0.02 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.60 7.84 -51.93 -0.41 0.19 16 38 H 0.11 1.00 6.87 -51.93 -0.36 0.64 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -37.03 325.45 -9.72 -46.75 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.21 Total: -0.07 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.46 Total: -9.83 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.54 Total: -51.47 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -1.81 Total: -47.49 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 42.09 SS G_CDS: -0.58 Total: 41.50 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.03 -9.72 -46.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408390021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.966 kcal (2) G-P(sol) polarization free energy of solvation -37.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds