Wall clock time and date at job start Tue Mar 31 2020 03:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 S 1.81391 * 109.47235 * 180.02562 * 10 9 7 12 12 O 1.42104 * 110.54521 * 291.62885 * 11 10 9 13 13 O 1.42108 * 110.54484 * 68.37707 * 11 10 9 14 14 N 1.65597 * 104.45133 * 180.02562 * 11 10 9 15 15 C 1.46820 * 120.12810 * 269.72132 * 14 11 10 16 16 C 1.53263 * 109.29421 * 236.31137 * 15 14 11 17 17 N 1.47045 * 107.41754 * 314.03381 * 16 15 14 18 18 C 1.33406 * 128.04930 * 234.34867 * 17 16 15 19 19 O 1.21584 * 123.14464 * 350.58555 * 18 17 16 20 20 N 1.34138 * 113.70613 * 170.59647 * 18 17 16 21 21 C 1.47180 * 109.19489 * 3.05497 * 20 18 17 22 22 C 1.47820 * 122.78622 * 51.83754 * 17 16 15 23 23 H 1.08996 * 112.40123 * 69.48972 * 22 17 16 24 24 C 1.47090 * 120.13305 * 90.00222 * 14 11 10 25 25 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 27 27 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 28 28 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 29 29 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 30 30 H 1.09001 * 109.54444 * 356.22626 * 15 14 11 31 31 H 1.09007 * 109.53783 * 116.47960 * 15 14 11 32 32 H 1.09003 * 109.96317 * 194.48736 * 16 15 14 33 33 H 1.08997 * 109.80807 * 73.48416 * 16 15 14 34 34 H 0.96999 * 125.40323 * 183.04412 * 20 18 17 35 35 H 1.08998 * 110.54910 * 243.54216 * 21 20 18 36 36 H 1.08993 * 110.54871 * 120.73056 * 21 20 18 37 37 H 1.09001 * 109.74279 * 242.26757 * 24 14 11 38 38 H 1.09004 * 109.74262 * 2.92490 * 24 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4201 1.2354 13 8 0.6649 -5.4194 -1.2386 14 7 2.5207 -6.3926 -0.0005 15 6 3.0434 -6.9130 -1.2700 16 6 2.8773 -8.4363 -1.2996 17 7 3.3359 -8.9544 -0.0021 18 6 4.2536 -9.8944 0.2300 19 8 4.7354 -10.5842 -0.6477 20 7 4.5949 -10.0074 1.5223 21 6 3.7765 -9.0815 2.3217 22 6 2.8428 -8.4297 1.2888 23 1 1.8003 -8.6898 1.4720 24 6 3.0469 -6.9098 1.2720 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6042 -0.8905 29 1 2.8721 -3.6043 0.8895 30 1 2.4916 -6.4715 -2.0999 31 1 4.1005 -6.6624 -1.3591 32 1 3.4803 -8.8609 -2.1023 33 1 1.8282 -8.6906 -1.4503 34 1 5.2733 -10.6048 1.8742 35 1 4.4051 -8.3289 2.7979 36 1 3.1997 -9.6275 3.0681 37 1 4.1094 -6.6801 1.3516 38 1 2.5089 -6.4562 2.1044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408390021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:40 Heat of formation + Delta-G solvation = -106.116764 kcal Electronic energy + Delta-G solvation = -23437.236429 eV Core-core repulsion = 19827.323273 eV Total energy + Delta-G solvation = -3609.913156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.25483 -38.61894 -38.24372 -37.04992 -36.84118 -35.87452 -34.30142 -33.10455 -32.25861 -29.16546 -27.56809 -26.29872 -24.47467 -23.44650 -22.76767 -21.39556 -19.70650 -19.03644 -18.61371 -18.36177 -17.63300 -17.11357 -17.09192 -16.62803 -16.51893 -16.04772 -15.62435 -15.40307 -15.08741 -15.01259 -14.52160 -14.44217 -14.10660 -13.72666 -13.52079 -13.44377 -13.17810 -12.97588 -12.89494 -12.79028 -12.68125 -12.29050 -12.21371 -12.20443 -12.10183 -11.71018 -11.35986 -11.16640 -10.62756 -10.62310 -10.17299 -9.38915 -8.24953 -6.38904 -0.73934 1.42272 1.45024 1.46302 1.53258 1.80482 2.05949 2.39041 2.85239 2.98523 3.08526 3.14058 3.37323 3.58242 3.75363 3.96768 4.08002 4.13651 4.16901 4.19290 4.35727 4.56876 4.65804 4.70061 4.76220 4.79935 4.86863 5.03485 5.07882 5.28667 5.29963 5.50914 5.68166 5.69548 6.07709 6.20386 6.49413 6.74866 7.31486 7.55494 8.86879 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.030524 B = 0.003430 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.105584 B = 8161.195076 C = 8272.120305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.587 4.587 11 S 2.614 3.386 12 O -0.984 6.984 13 O -0.991 6.991 14 N -0.995 5.995 15 C 0.100 3.900 16 C 0.137 3.863 17 N -0.628 5.628 18 C 0.695 3.305 19 O -0.641 6.641 20 N -0.732 5.732 21 C 0.102 3.898 22 C 0.097 3.903 23 H 0.104 0.896 24 C 0.103 3.897 25 H 0.267 0.733 26 H 0.005 0.995 27 H 0.008 0.992 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.438 0.562 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.302 -16.898 5.599 20.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.093 0.907 9 C -0.019 4.019 10 C -0.719 4.719 11 S 2.713 3.287 12 O -0.975 6.975 13 O -0.981 6.981 14 N -0.833 5.833 15 C -0.026 4.026 16 C 0.014 3.986 17 N -0.366 5.366 18 C 0.395 3.605 19 O -0.523 6.523 20 N -0.395 5.395 21 C -0.023 4.023 22 C -0.008 4.008 23 H 0.122 0.878 24 C -0.023 4.023 25 H 0.076 0.924 26 H 0.023 0.977 27 H 0.027 0.973 28 H 0.157 0.843 29 H 0.162 0.838 30 H 0.126 0.874 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.281 0.719 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.378 -17.284 5.009 20.292 hybrid contribution 0.611 1.043 -0.046 1.210 sum 9.989 -16.241 4.963 19.702 Atomic orbital electron populations 1.70083 1.08031 1.28378 1.50845 1.26085 0.95818 1.03788 0.94415 0.85402 0.78168 0.77471 0.79445 1.18919 1.21088 1.18689 1.21496 0.93969 0.90862 1.51553 0.90663 1.18822 0.93642 0.93073 0.96379 1.30390 1.12700 1.16528 1.12296 1.04776 0.74826 0.76206 0.72928 1.93494 1.72193 1.85516 1.46263 1.93498 1.72430 1.85558 1.46605 1.57496 1.58881 1.54535 1.12371 1.21960 1.01638 0.93794 0.85224 1.21806 1.00678 0.92881 0.83268 1.47334 1.42348 1.39383 1.07553 1.15973 0.79792 0.80619 0.84082 1.90913 1.62259 1.50769 1.48367 1.45163 1.43102 1.45515 1.05676 1.22574 0.93049 0.93478 0.93166 1.22788 1.00480 0.94540 0.83036 0.87839 1.22262 1.02011 0.92784 0.85196 0.92402 0.97656 0.97340 0.84301 0.83840 0.87390 0.88739 0.87798 0.90675 0.71892 0.86760 0.86782 0.87941 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 42.18 29.54 68.60 2.03 44.21 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.54 -28.98 9.11 25.60 0.23 -28.74 16 8 H 0.08 3.71 7.74 -2.91 -0.02 3.68 16 9 C 0.02 0.99 4.98 29.85 0.15 1.14 16 10 C -0.59 -20.34 6.12 71.98 0.44 -19.90 16 11 S 2.61 83.44 5.43 -56.49 -0.31 83.13 16 12 O -0.98 -35.89 16.57 -127.65 -2.12 -38.01 16 13 O -0.99 -37.82 16.55 -127.65 -2.11 -39.93 16 14 N -0.99 -21.64 3.17 -512.48 -1.62 -23.26 16 15 C 0.10 1.92 6.52 86.41 0.56 2.48 16 16 C 0.14 2.75 7.08 86.36 0.61 3.36 16 17 N -0.63 -12.68 2.98 -811.37 -2.42 -15.10 16 18 C 0.70 16.11 8.64 179.68 1.55 17.66 16 19 O -0.64 -20.80 17.61 -3.98 -0.07 -20.87 16 20 N -0.73 -10.17 6.39 -477.88 -3.05 -13.22 16 21 C 0.10 0.82 7.66 86.50 0.66 1.49 16 22 C 0.10 1.44 4.14 45.11 0.19 1.62 16 23 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 24 C 0.10 1.62 5.83 86.39 0.50 2.12 16 25 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 29 H 0.14 4.21 8.14 -2.39 -0.02 4.19 16 30 H 0.11 2.18 6.83 -2.39 -0.02 2.16 16 31 H 0.09 1.47 8.14 -2.38 -0.02 1.46 16 32 H 0.10 2.04 7.84 -2.39 -0.02 2.02 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 34 H 0.44 4.45 8.96 -92.71 -0.83 3.62 16 35 H 0.11 0.39 7.56 -2.39 -0.02 0.37 16 36 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.10 1.14 7.84 -2.39 -0.02 1.13 16 38 H 0.12 1.75 6.87 -2.38 -0.02 1.73 16 Total: -1.00 -82.09 325.45 -3.77 -85.86 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.25 Total: 11.02 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 5.36 Total: -18.45 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -6.81 Total: -106.96 kcal Atomic # 8 Polarization: -94.51 SS G_CDS: -4.30 Total: -98.81 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 83.44 SS G_CDS: -0.31 Total: 83.13 kcal Total: -82.09 -3.77 -85.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408390021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.255 kcal (2) G-P(sol) polarization free energy of solvation -82.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds