Wall clock time and date at job start Tue Mar 31 2020 03:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47086 * 155.62613 * 3 2 1 5 5 C 1.37092 * 120.00390 * 264.23335 * 4 3 2 6 6 H 1.07996 * 120.00484 * 197.72498 * 5 4 3 7 7 C 1.38957 * 119.99772 * 17.71770 * 5 4 3 8 8 N 1.31409 * 119.99753 * 21.39851 * 7 5 4 9 9 Si 1.86802 * 120.00060 * 201.39987 * 7 5 4 10 10 H 1.48501 * 109.46841 * 59.99816 * 9 7 5 11 11 H 1.48497 * 109.47043 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47070 * 300.00154 * 9 7 5 13 13 C 1.34781 * 119.99734 * 84.22768 * 4 3 2 14 14 O 1.21296 * 119.99664 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00446 * 0.02562 * 13 4 3 16 16 N 1.46493 * 109.47296 * 179.97438 * 15 13 4 17 17 C 1.34782 * 120.00132 * 179.97438 * 16 15 13 18 18 O 1.21557 * 119.99271 * 359.97438 * 17 16 15 19 19 C 1.47847 * 120.00268 * 179.97438 * 17 16 15 20 20 C 1.39608 * 120.11842 * 359.97438 * 19 17 16 21 21 C 1.37960 * 119.96578 * 180.02562 * 20 19 17 22 22 C 1.38287 * 120.20906 * 359.72302 * 21 20 19 23 23 C 1.38807 * 120.23601 * 0.54890 * 22 21 20 24 24 O 1.35910 * 119.98397 * 179.72368 * 23 22 21 25 25 C 1.38499 * 120.02968 * 359.45663 * 23 22 21 26 26 H 1.08996 * 109.47262 * 35.62406 * 3 2 1 27 27 H 1.09003 * 109.46717 * 275.62761 * 3 2 1 28 28 H 0.97003 * 119.99752 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47064 * 59.99078 * 15 13 4 30 30 H 1.08999 * 109.46602 * 300.00238 * 15 13 4 31 31 H 0.96999 * 119.99966 * 0.02562 * 16 15 13 32 32 H 1.08002 * 120.01720 * 359.97438 * 20 19 17 33 33 H 1.08008 * 119.89722 * 180.02562 * 21 20 19 34 34 H 1.07996 * 119.88505 * 180.29736 * 22 21 20 35 35 H 0.96701 * 114.00327 * 269.72646 * 24 23 22 36 36 H 1.07998 * 120.10098 * 180.25049 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.2590 -0.5700 5 6 3.4367 1.3242 -1.8962 6 1 4.0527 2.1349 -2.2563 7 6 2.9898 0.3470 -2.7773 8 7 1.9368 -0.3786 -2.4746 9 14 3.8858 0.0648 -4.3919 10 1 5.2940 -0.3176 -4.1163 11 1 3.2159 -1.0252 -5.1459 12 1 3.8602 1.3125 -5.1969 13 6 3.2092 2.3526 0.2095 14 8 3.6135 3.3943 -0.2624 15 6 2.8349 2.2810 1.6675 16 7 3.0465 3.5897 2.2909 17 6 2.7762 3.7643 3.5998 18 8 2.3564 2.8359 4.2627 19 6 2.9903 5.0849 4.2291 20 6 3.4729 6.1526 3.4701 21 6 3.6720 7.3834 4.0606 22 6 3.3896 7.5654 5.4021 23 6 2.9148 6.5082 6.1661 24 8 2.6443 6.6913 7.4853 25 6 2.7114 5.2684 5.5833 26 1 2.9717 -0.8345 -0.5986 27 1 2.9713 -0.1000 1.0228 28 1 1.6251 -1.0610 -3.0895 29 1 3.4559 1.5367 2.1659 30 1 1.7859 1.9994 1.7598 31 1 3.3804 4.3307 1.7616 32 1 3.6910 6.0150 2.4213 33 1 4.0449 8.2088 3.4723 34 1 3.5429 8.5323 5.8579 35 1 3.3944 6.5133 8.0691 36 1 2.3382 4.4461 6.1758 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427098730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:15 Heat of formation + Delta-G solvation = -41.820247 kcal Electronic energy + Delta-G solvation = -23381.446648 eV Core-core repulsion = 19638.877647 eV Total energy + Delta-G solvation = -3742.569001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41969 -39.34854 -38.56102 -36.70868 -35.99915 -34.63564 -34.03014 -32.05672 -31.43379 -30.12623 -28.01162 -27.35743 -24.81077 -23.56441 -22.69423 -20.58327 -19.73457 -18.83766 -18.08914 -17.19556 -16.64641 -16.52024 -16.13480 -15.87330 -15.38661 -15.15078 -15.01998 -14.59823 -14.24960 -13.97549 -13.89686 -13.52525 -13.10416 -12.63170 -12.53024 -12.45252 -12.21964 -11.93839 -11.85604 -11.68167 -11.37631 -11.21505 -10.95276 -10.66442 -10.52214 -10.45138 -9.93713 -9.39538 -9.28612 -9.00662 -8.88519 -8.86721 -8.20988 -6.63164 -4.13805 0.61712 1.01400 2.75262 3.01708 3.08546 3.16288 3.21006 3.40174 3.61717 3.67690 3.91235 3.95845 4.02995 4.58092 4.61048 4.64849 4.77996 4.92188 4.93174 5.09784 5.21139 5.37136 5.44965 5.64151 5.65600 5.80479 6.00421 6.06418 6.09046 6.09602 6.39805 6.40956 6.49591 7.34903 7.35012 7.63810 7.70415 8.10881 8.27997 8.66999 8.81880 9.02795 9.51085 10.42372 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.027447 B = 0.003066 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.917400 B = 9129.348615 C = 9911.406970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.242 3.758 3 C 0.217 3.783 4 N -0.430 5.430 5 C -0.319 4.319 6 H 0.111 0.889 7 C 0.035 3.965 8 N -0.871 5.871 9 Si 0.931 3.069 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.443 3.557 14 O -0.575 6.575 15 C 0.103 3.897 16 N -0.702 5.702 17 C 0.555 3.445 18 O -0.541 6.541 19 C -0.111 4.111 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.123 4.123 23 C 0.094 3.906 24 O -0.497 6.497 25 C -0.087 4.087 26 H 0.131 0.869 27 H 0.088 0.912 28 H 0.276 0.724 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.411 0.589 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.391 0.609 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.243 8.875 13.173 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.077 4.077 3 C 0.090 3.910 4 N -0.150 5.150 5 C -0.446 4.446 6 H 0.129 0.871 7 C -0.170 4.170 8 N -0.509 5.509 9 Si 0.757 3.243 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.231 3.769 14 O -0.459 6.459 15 C -0.024 4.024 16 N -0.356 5.356 17 C 0.342 3.658 18 O -0.420 6.420 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.128 4.128 22 C -0.142 4.142 23 C 0.049 3.951 24 O -0.307 6.307 25 C -0.106 4.106 26 H 0.149 0.851 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.250 0.750 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.247 0.753 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.802 8.687 13.047 16.393 hybrid contribution 1.177 -0.114 -1.053 1.583 sum 5.980 8.573 11.994 15.909 Atomic orbital electron populations 1.80917 1.13529 1.08203 1.11859 1.29199 0.95290 0.92875 0.90293 1.18821 0.81798 0.91448 0.98982 1.43556 1.55512 1.06329 1.09566 1.19701 1.30462 1.12377 0.82027 0.87137 1.25334 0.94829 0.96897 0.99921 1.69861 1.19491 1.22911 1.38650 0.85912 0.79464 0.78304 0.80617 1.19555 1.20917 1.19714 1.19918 0.85137 0.84266 0.87566 1.90520 1.51244 1.29097 1.74999 1.21145 1.02698 0.85607 0.92961 1.45620 1.66347 1.14096 1.09564 1.18165 0.78051 0.87800 0.81799 1.90772 1.45808 1.42468 1.62911 1.19828 1.03386 0.93938 0.94310 1.21506 0.96929 0.92424 1.00251 1.21016 0.99954 0.97388 0.94445 1.21618 0.98540 0.99216 0.94827 1.18321 0.99706 0.92320 0.84732 1.84853 1.40765 1.91065 1.14003 1.21542 0.97585 0.97128 0.94338 0.85121 0.89444 0.91290 0.89168 0.89506 0.74971 0.84678 0.84739 0.85030 0.75343 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.01 18.54 42.15 0.78 -10.23 16 2 C 0.24 5.25 12.95 -20.76 -0.27 4.98 16 3 C 0.22 4.12 4.91 -6.83 -0.03 4.09 16 4 N -0.43 -9.49 2.60 -117.93 -0.31 -9.80 16 5 C -0.32 -7.78 9.32 -14.93 -0.14 -7.92 16 6 H 0.11 2.82 7.39 -52.49 -0.39 2.44 16 7 C 0.04 0.83 4.87 -17.47 -0.08 0.74 16 8 N -0.87 -21.14 9.48 55.50 0.53 -20.61 16 9 Si 0.93 18.76 29.60 -169.99 -5.03 13.72 16 10 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 11 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 C 0.44 9.38 7.63 -10.98 -0.08 9.30 16 14 O -0.57 -13.57 15.32 5.54 0.08 -13.48 16 15 C 0.10 1.81 4.76 -5.20 -0.02 1.79 16 16 N -0.70 -11.37 5.48 -62.43 -0.34 -11.72 16 17 C 0.56 8.90 7.77 -12.33 -0.10 8.80 16 18 O -0.54 -10.14 16.35 5.32 0.09 -10.05 16 19 C -0.11 -1.46 5.87 -104.99 -0.62 -2.08 16 20 C -0.09 -1.01 9.54 -39.17 -0.37 -1.38 16 21 C -0.11 -0.98 10.03 -39.67 -0.40 -1.38 16 22 C -0.12 -1.10 9.98 -39.35 -0.39 -1.49 16 23 C 0.09 0.96 6.70 -39.27 -0.26 0.70 16 24 O -0.50 -4.43 13.50 -19.46 -0.26 -4.70 16 25 C -0.09 -1.06 9.53 -39.02 -0.37 -1.43 16 26 H 0.13 2.51 6.46 -51.93 -0.34 2.17 16 27 H 0.09 1.27 6.68 -51.93 -0.35 0.92 16 28 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 29 H 0.09 1.40 7.42 -51.93 -0.39 1.01 16 30 H 0.09 1.60 7.51 -51.93 -0.39 1.21 16 31 H 0.41 6.34 5.47 -40.82 -0.22 6.12 16 32 H 0.14 1.37 6.40 -52.49 -0.34 1.03 16 33 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.39 1.51 9.06 45.56 0.41 1.92 16 36 H 0.14 1.79 7.65 -52.49 -0.40 1.39 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -32.31 324.50 -5.09 -37.41 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -2.37 Total: 9.85 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: -3.15 Total: 14.72 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.66 Total: -52.36 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.09 Total: -28.23 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.31 -5.09 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427098730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.412 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds