Wall clock time and date at job start Tue Mar 31 2020 04:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35809 * 116.99842 * 2 1 4 4 C 1.38786 * 119.93632 * 359.71839 * 3 2 1 5 5 C 1.37822 * 120.18049 * 180.27698 * 4 3 2 6 6 C 1.39776 * 120.04088 * 0.02562 * 5 4 3 7 7 C 1.43199 * 120.06004 * 179.97438 * 6 5 4 8 8 N 6.70178 * 116.89973 * 359.77688 * 2 1 3 9 9 C 1.39675 * 119.87343 * 0.02562 * 6 5 4 10 10 C 1.38408 * 119.82280 * 359.97438 * 9 6 5 11 11 N 1.39907 * 120.01974 * 179.97438 * 10 9 6 12 12 C 1.34771 * 120.00259 * 325.30397 * 11 10 9 13 13 O 1.21399 * 120.00087 * 4.48311 * 12 11 10 14 14 C 1.49334 * 120.00127 * 184.48853 * 12 11 10 15 15 O 1.21362 * 119.99911 * 359.97438 * 14 12 11 16 16 N 1.34781 * 120.00131 * 180.02562 * 14 12 11 17 17 C 1.46494 * 119.99978 * 179.97438 * 16 14 12 18 18 C 1.50707 * 109.46959 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00172 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99692 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00057 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99775 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47115 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47080 * 119.99915 * 22 20 18 25 25 H 1.48502 * 109.46837 * 239.99982 * 22 20 18 26 26 H 1.09004 * 109.47082 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47501 * 299.99994 * 1 2 3 28 28 H 1.09001 * 109.47404 * 60.00511 * 1 2 3 29 29 H 1.08006 * 119.90653 * 0.27909 * 4 3 2 30 30 H 1.07996 * 119.97900 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.08942 * 180.02562 * 9 6 5 32 32 H 0.96997 * 119.99321 * 145.30829 * 11 10 9 33 33 H 0.97003 * 119.99436 * 359.97438 * 16 14 12 34 34 H 1.08998 * 109.47593 * 300.00015 * 17 16 14 35 35 H 1.08998 * 109.47419 * 60.00067 * 17 16 14 36 36 H 0.97003 * 119.99495 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2883 2.3732 -0.0059 5 6 1.9087 3.6038 -0.0117 6 6 3.3042 3.6839 -0.0122 7 6 3.9493 4.9624 -0.0187 8 7 4.4611 5.9766 -0.0233 9 6 4.0682 2.5147 -0.0073 10 6 3.4395 1.2816 -0.0015 11 7 4.2007 0.1078 0.0028 12 6 5.3719 0.0616 -0.6623 13 8 5.8061 1.0613 -1.1970 14 6 6.1355 -1.2193 -0.7419 15 8 5.7015 -2.2186 -0.2071 16 7 7.3070 -1.2653 -1.4067 17 6 8.0563 -2.5217 -1.4842 18 6 9.3195 -2.3052 -2.2771 19 1 9.5420 -1.3292 -2.6824 20 6 10.1910 -3.3531 -2.4852 21 7 9.9197 -4.5418 -1.9921 22 14 11.7570 -3.0846 -3.4675 23 1 11.8275 -1.6686 -3.9093 24 1 12.9340 -3.3976 -2.6179 25 1 11.7541 -3.9741 -4.6566 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 0.2099 2.3137 -0.0059 30 1 1.3164 4.5068 -0.0167 31 1 5.1466 2.5725 -0.0072 32 1 3.8854 -0.6728 0.4846 33 1 7.6539 -0.4664 -1.8338 34 1 8.3111 -2.8556 -0.4783 35 1 7.4453 -3.2795 -1.9746 36 1 10.5331 -5.2789 -2.1382 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427863368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:29 Heat of formation + Delta-G solvation = -45.605488 kcal Electronic energy + Delta-G solvation = -23066.694702 eV Core-core repulsion = 19323.961560 eV Total energy + Delta-G solvation = -3742.733141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27277 -39.98675 -38.42470 -37.88938 -36.39162 -35.24609 -34.23625 -32.39425 -31.01168 -30.34432 -27.95163 -27.67872 -25.03492 -23.73560 -23.14964 -21.81228 -19.97006 -19.55459 -18.55365 -18.34597 -16.83262 -16.75197 -16.37956 -16.09302 -15.65535 -15.32439 -15.01313 -14.71997 -14.38935 -14.27450 -14.12785 -14.04603 -13.65869 -13.16469 -13.01415 -12.79720 -12.64185 -12.34993 -12.08430 -11.93796 -11.77875 -11.43161 -11.21727 -10.99113 -10.95462 -10.68875 -10.34151 -9.47988 -9.21211 -9.05916 -8.85249 -8.26881 -8.12754 -6.23600 -4.30828 0.44285 0.78613 1.72323 2.40239 2.56105 2.65085 2.78397 3.22174 3.29865 3.33857 3.49677 3.60993 3.68223 4.00230 4.30396 4.33223 4.45100 4.68995 4.75302 4.77023 4.99051 5.07695 5.11899 5.13463 5.34994 5.42826 5.65690 5.86400 5.99523 6.28400 6.81113 6.94958 7.06125 7.15975 7.31204 7.34368 7.53257 7.78299 7.85196 8.34715 8.53621 8.80941 9.35674 10.86484 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.003032 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.732933 B = 9232.405358 C =10574.092817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.138 3.862 4 C -0.195 4.195 5 C -0.042 4.042 6 C -0.050 4.050 7 C 0.262 3.738 8 N -0.421 5.421 9 C -0.038 4.038 10 C 0.119 3.881 11 N -0.641 5.641 12 C 0.510 3.490 13 O -0.507 6.507 14 C 0.493 3.507 15 O -0.533 6.533 16 N -0.670 5.670 17 C 0.246 3.754 18 C -0.546 4.546 19 H 0.067 0.933 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.906 3.094 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.159 0.841 32 H 0.429 0.571 33 H 0.405 0.595 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.316 11.476 5.301 24.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.089 3.911 4 C -0.214 4.214 5 C -0.064 4.064 6 C -0.055 4.055 7 C -0.053 4.053 8 N -0.096 5.096 9 C -0.060 4.060 10 C 0.024 3.976 11 N -0.289 5.289 12 C 0.293 3.707 13 O -0.381 6.381 14 C 0.271 3.729 15 O -0.412 6.412 16 N -0.319 5.319 17 C 0.126 3.874 18 C -0.584 4.584 19 H 0.085 0.915 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.733 3.267 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.177 0.823 32 H 0.268 0.732 33 H 0.240 0.760 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.277 12.553 5.260 24.421 hybrid contribution 0.361 -0.298 -0.517 0.698 sum -19.916 12.254 4.743 23.860 Atomic orbital electron populations 1.23178 0.77426 1.04679 1.01641 1.86096 1.22153 1.25932 1.87790 1.19064 0.90381 0.85407 0.96220 1.20964 1.00446 0.90922 1.09053 1.20920 0.92141 0.97940 0.95362 1.15703 0.92384 0.86318 1.11076 1.25495 0.93577 0.92680 0.93562 1.81258 1.07694 1.11413 1.09247 1.21229 1.01752 0.88443 0.94610 1.16804 0.86825 0.86917 1.07050 1.43020 1.20533 1.14327 1.51006 1.20966 0.81424 0.90348 0.77931 1.90733 1.67233 1.35849 1.44268 1.19589 0.83509 0.87520 0.82306 1.90748 1.68541 1.35284 1.46601 1.46428 1.19188 1.16537 1.49731 1.19363 0.90326 0.79453 0.98236 1.21242 1.04989 0.97038 1.35178 0.91472 1.24938 0.98542 0.94756 0.95640 1.69974 1.37159 1.00900 1.44186 0.86314 0.82284 0.78503 0.79590 1.19481 1.20725 1.20730 0.87699 0.92181 0.92163 0.83826 0.84456 0.82348 0.73232 0.76042 0.94638 0.94655 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.65 10.04 -19.14 -0.19 -2.84 16 3 C 0.14 1.24 6.71 -38.88 -0.26 0.98 16 4 C -0.19 -1.25 9.01 -39.53 -0.36 -1.61 16 5 C -0.04 -0.29 9.74 -39.16 -0.38 -0.67 16 6 C -0.05 -0.48 5.74 -106.86 -0.61 -1.10 16 7 C 0.26 3.00 15.32 -22.47 -0.34 2.65 16 8 N -0.42 -5.76 18.54 41.84 0.78 -4.99 16 9 C -0.04 -0.43 8.40 -38.98 -0.33 -0.75 16 10 C 0.12 1.35 6.31 -83.61 -0.53 0.82 16 11 N -0.64 -8.32 5.17 -10.22 -0.05 -8.37 16 12 C 0.51 8.14 7.73 -11.64 -0.09 8.05 16 13 O -0.51 -8.57 13.89 5.45 0.08 -8.49 16 14 C 0.49 9.50 7.89 -11.64 -0.09 9.41 16 15 O -0.53 -11.41 16.48 5.49 0.09 -11.32 16 16 N -0.67 -14.05 5.54 -61.95 -0.34 -14.39 16 17 C 0.25 6.26 5.43 -5.19 -0.03 6.23 16 18 C -0.55 -14.53 9.28 -34.44 -0.32 -14.85 16 19 H 0.07 1.70 7.60 -52.49 -0.40 1.30 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -25.31 13.29 55.43 0.74 -24.57 16 22 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 28 H 0.06 0.20 7.64 -51.93 -0.40 -0.20 16 29 H 0.14 0.50 6.27 -52.48 -0.33 0.17 16 30 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.16 2.03 6.19 -52.49 -0.32 1.70 16 32 H 0.43 5.19 8.03 -40.82 -0.33 4.87 16 33 H 0.40 7.86 7.79 -40.82 -0.32 7.55 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -32.11 332.60 -4.69 -36.79 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.32 Total: 5.62 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -2.45 Total: 11.94 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 1.12 Total: -52.32 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.03 Total: -22.65 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.11 -4.69 -36.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427863368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.815 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds