Wall clock time and date at job start Tue Mar 31 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 117.00337 * 2 1 4 4 O 1.20824 * 119.99699 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00363 * 180.02562 * 3 2 1 6 6 S 1.81396 * 109.47355 * 180.02562 * 5 3 2 7 7 C 1.81399 * 103.00024 * 179.97438 * 6 5 3 8 8 C 1.53005 * 109.47030 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47160 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99855 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00197 * 180.02562 * 9 8 7 12 12 C 1.47581 * 134.49354 * 180.02562 * 11 9 8 13 13 C 1.53945 * 86.11895 * 155.35947 * 12 11 9 14 14 O 1.42904 * 113.73986 * 269.15696 * 13 12 11 15 15 C 1.50694 * 113.74220 * 137.95139 * 13 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.47582 * 134.48982 * 359.97438 * 11 9 8 24 24 H 1.09001 * 109.47170 * 300.00168 * 1 2 3 25 25 H 1.08994 * 109.47093 * 60.00051 * 1 2 3 26 26 H 1.09002 * 109.47358 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46919 * 59.99484 * 5 3 2 28 28 H 1.08998 * 109.46678 * 299.99963 * 5 3 2 29 29 H 1.09008 * 109.47078 * 60.00147 * 7 6 5 30 30 H 1.09001 * 109.47104 * 299.99740 * 7 6 5 31 31 H 1.08994 * 109.46740 * 60.00070 * 8 7 6 32 32 H 1.09001 * 109.47279 * 300.00018 * 8 7 6 33 33 H 1.09001 * 113.77016 * 41.05438 * 12 11 9 34 34 H 1.09005 * 113.86980 * 269.67513 * 12 11 9 35 35 H 0.96699 * 113.99284 * 178.07513 * 14 13 12 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.09002 * 113.76615 * 90.34214 * 23 11 9 38 38 H 1.08991 * 113.77327 * 318.94082 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 16 4.0807 3.0143 0.0003 7 6 5.8914 2.9044 0.0003 8 6 6.4878 4.3134 0.0004 9 6 7.9920 4.2222 0.0010 10 8 8.5337 3.1370 0.0008 11 7 8.7353 5.3464 0.0017 12 6 10.1839 5.6285 0.0019 13 6 9.8148 6.9793 -0.6377 14 8 9.7998 6.9543 -2.0664 15 6 10.5868 8.1464 -0.0785 16 1 11.3194 7.9868 0.6988 17 6 10.3577 9.4183 -0.5592 18 7 9.4659 9.6127 -1.5060 19 14 11.3141 10.8652 0.1345 20 1 10.5772 11.4375 1.2898 21 1 12.6537 10.4050 0.5806 22 1 11.4717 11.9034 -0.9155 23 6 8.4276 6.7898 0.0016 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.9556 0.7808 -0.8908 28 1 3.9563 0.7805 0.8892 29 1 6.2229 2.3700 -0.8901 30 1 6.2229 2.3691 0.8900 31 1 6.1563 4.8482 0.8904 32 1 6.1562 4.8484 -0.8896 33 1 10.7590 4.9745 -0.6536 34 1 10.6158 5.7178 0.9988 35 1 9.5398 7.7930 -2.4716 36 1 9.3045 10.5076 -1.8439 37 1 8.3410 7.2205 0.9991 38 1 7.6009 7.0627 -0.6542 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430449716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:21 Heat of formation + Delta-G solvation = -134.296635 kcal Electronic energy + Delta-G solvation = -21661.317681 eV Core-core repulsion = 18017.889803 eV Total energy + Delta-G solvation = -3643.427878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74820 -39.57579 -37.52642 -36.87975 -33.97978 -32.74136 -32.22136 -31.15836 -28.78273 -27.66525 -25.81017 -25.29462 -23.70816 -21.68490 -20.01235 -18.28908 -18.05744 -17.49041 -17.22514 -17.03783 -16.52850 -15.74013 -15.65075 -15.53629 -14.99985 -14.56796 -14.19211 -14.00989 -13.95415 -13.30827 -13.00438 -12.87315 -12.64643 -12.47918 -12.22118 -12.11775 -11.97936 -11.57338 -11.30864 -11.21661 -11.11609 -11.03842 -10.94206 -10.54710 -10.31541 -10.15711 -9.68010 -9.25624 -8.79212 -8.45474 -7.89897 -7.87280 -6.41575 -4.51842 1.00566 1.78638 2.25060 2.41885 3.11726 3.13412 3.21956 3.25083 3.54179 4.17018 4.33993 4.54487 4.70713 4.78843 4.79913 4.81420 4.82585 4.92976 5.00427 5.12611 5.51157 5.59517 5.74310 5.87622 5.91674 5.94944 6.14257 6.34226 6.47858 6.57945 6.64413 7.06881 7.30007 7.61180 7.79443 8.42271 8.51269 8.66322 9.19415 9.43267 10.65155 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.033684 B = 0.002352 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.045976 B =11902.434546 C =12384.434512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.478 3.522 4 O -0.483 6.483 5 C -0.105 4.105 6 S -0.185 6.185 7 C -0.080 4.080 8 C -0.118 4.118 9 C 0.534 3.466 10 O -0.568 6.568 11 N -0.630 5.630 12 C 0.112 3.888 13 C 0.238 3.762 14 O -0.573 6.573 15 C -0.537 4.537 16 H 0.071 0.929 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.271 1.271 22 H -0.283 1.283 23 C 0.075 3.925 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.393 0.607 36 H 0.274 0.726 37 H 0.083 0.917 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.512 -13.537 3.257 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.319 3.681 4 O -0.369 6.369 5 C -0.254 4.254 6 S 0.041 5.959 7 C -0.228 4.228 8 C -0.159 4.159 9 C 0.322 3.678 10 O -0.449 6.449 11 N -0.363 5.363 12 C -0.010 4.010 13 C 0.197 3.803 14 O -0.386 6.386 15 C -0.575 4.575 16 H 0.090 0.910 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.196 1.196 22 H -0.209 1.209 23 C -0.047 4.047 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.143 -13.541 3.223 19.844 hybrid contribution 0.689 0.347 0.293 0.825 sum -13.454 -13.194 3.515 19.169 Atomic orbital electron populations 1.23324 0.75617 1.03911 1.02886 1.86475 1.23874 1.32739 1.84316 1.22622 0.90526 0.81807 0.73158 1.90738 1.66432 1.35959 1.43738 1.23035 0.92131 1.01319 1.08888 1.87449 1.05560 1.04652 1.98217 1.23243 0.92061 1.00777 1.06739 1.21204 0.92891 0.96199 1.05640 1.19901 0.88326 0.83087 0.76507 1.90634 1.74113 1.27239 1.52952 1.50163 1.09530 1.06390 1.70245 1.23472 0.81066 0.96355 1.00111 1.19835 0.89436 0.90695 0.80370 1.86056 1.91674 1.41939 1.18913 1.21501 1.23153 0.91191 1.21654 0.91038 1.25078 0.94375 0.99325 0.94304 1.69315 1.33160 1.23554 1.27795 0.86321 0.80295 0.81125 0.78719 1.20303 1.19551 1.20898 1.24366 1.03150 0.76008 1.01224 0.91646 0.91619 0.87821 0.85754 0.85803 0.88929 0.89030 0.88293 0.88068 0.91123 0.89595 0.75129 0.91601 0.89848 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.18 10.56 -39.26 -0.41 -3.60 16 3 C 0.48 5.09 7.98 36.01 0.29 5.38 16 4 O -0.48 -6.67 15.61 -18.75 -0.29 -6.97 16 5 C -0.11 -0.95 6.54 36.01 0.24 -0.71 16 6 S -0.19 -2.28 20.88 -107.50 -2.24 -4.53 16 7 C -0.08 -1.01 5.23 37.16 0.19 -0.82 16 8 C -0.12 -1.75 5.46 -27.88 -0.15 -1.90 16 9 C 0.53 10.23 8.06 -10.99 -0.09 10.14 16 10 O -0.57 -12.27 16.71 5.55 0.09 -12.17 16 11 N -0.63 -12.86 3.61 -178.32 -0.64 -13.50 16 12 C 0.11 2.38 8.23 -2.97 -0.02 2.36 16 13 C 0.24 5.58 1.44 -90.86 -0.13 5.45 16 14 O -0.57 -14.49 13.48 -35.23 -0.48 -14.97 16 15 C -0.54 -13.18 8.62 -34.44 -0.30 -13.47 16 16 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 18 N -0.90 -22.36 11.09 55.43 0.61 -21.75 16 19 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 C 0.08 1.56 8.00 -2.99 -0.02 1.53 16 24 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 25 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.12 0.87 8.14 -51.92 -0.42 0.44 16 29 H 0.09 1.19 8.10 -51.92 -0.42 0.77 16 30 H 0.09 1.14 8.10 -51.92 -0.42 0.71 16 31 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 34 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 35 H 0.39 10.03 6.46 45.56 0.29 10.32 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 346.52 15.07 5.22 5.22 Total: -1.00 -29.95 346.52 -6.93 -36.88 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -4.74 Total: 10.31 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 0.97 Total: 10.90 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.03 Total: -35.25 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.09 Total: -37.71 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.24 Total: -4.53 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.95 -6.93 -36.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430449716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.417 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds