Wall clock time and date at job start Tue Mar 31 2020 04:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47282 * 298.79335 * 3 2 1 5 5 C 1.37095 * 119.99944 * 264.26777 * 4 3 2 6 6 H 1.08000 * 119.99953 * 140.36807 * 5 4 3 7 7 C 1.38951 * 120.00014 * 320.37073 * 5 4 3 8 8 N 1.31418 * 120.00161 * 160.28677 * 7 5 4 9 9 Si 1.86798 * 119.99857 * 340.28478 * 7 5 4 10 10 H 1.48499 * 109.47203 * 95.35301 * 9 7 5 11 11 H 1.48505 * 109.46932 * 215.34432 * 9 7 5 12 12 H 1.48491 * 109.47434 * 335.35071 * 9 7 5 13 13 C 1.34776 * 119.99968 * 84.26376 * 4 3 2 14 14 O 1.21297 * 119.99650 * 180.02562 * 13 4 3 15 15 C 1.50695 * 120.00128 * 0.02562 * 13 4 3 16 16 N 1.46502 * 109.47127 * 179.97438 * 15 13 4 17 17 C 1.39676 * 119.99949 * 180.02562 * 16 15 13 18 18 C 1.38931 * 120.07602 * 5.54080 * 17 16 15 19 19 C 1.38078 * 119.92786 * 180.02562 * 18 17 16 20 20 C 1.38310 * 120.07174 * 359.72540 * 19 18 17 21 21 C 1.38262 * 120.15075 * 0.54786 * 20 19 18 22 22 C 1.38129 * 120.07183 * 359.45442 * 21 20 19 23 23 N 1.48001 * 120.03663 * 180.29647 * 22 21 20 24 24 O 1.21801 * 119.99952 * 35.96864 * 23 22 21 25 25 O 1.21802 * 120.00132 * 215.96861 * 23 22 21 26 26 H 4.40637 * 5.51428 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47173 * 178.79405 * 3 2 1 28 28 H 1.09001 * 109.47310 * 58.79497 * 3 2 1 29 29 H 0.96992 * 120.00062 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.47240 * 59.99929 * 15 13 4 31 31 H 1.08997 * 109.46994 * 299.99712 * 15 13 4 32 32 H 0.97001 * 119.99990 * 359.97438 * 16 15 13 33 33 H 1.08002 * 120.03500 * 359.97438 * 18 17 16 34 34 H 1.08001 * 119.96590 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.92502 * 180.27725 * 20 19 18 36 36 H 1.07999 * 119.96570 * 179.72755 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1346 -0.6644 1.2105 5 6 3.4746 0.0788 2.3112 6 1 3.2232 -0.2748 3.3002 7 6 4.1426 1.2871 2.1543 8 7 4.1313 2.1748 3.1233 9 14 5.0567 1.6496 0.5661 10 1 4.1798 2.4312 -0.3424 11 1 6.2812 2.4339 0.8678 12 1 5.4358 0.3724 -0.0895 13 6 3.2499 -2.0068 1.2419 14 8 3.6540 -2.5574 2.2443 15 6 2.8766 -2.8238 0.0319 16 7 3.0902 -4.2448 0.3172 17 6 2.8124 -5.2028 -0.6605 18 6 2.4440 -4.8055 -1.9398 19 6 2.1695 -5.7552 -2.9038 20 6 2.2665 -7.1007 -2.5986 21 6 2.6274 -7.4996 -1.3249 22 6 2.9033 -6.5548 -0.3558 23 7 3.2958 -6.9827 1.0055 24 8 3.9868 -7.9743 1.1566 25 8 2.9280 -6.3432 1.9747 26 1 -1.0499 0.0001 0.0003 27 1 3.0088 1.0283 -0.0216 28 1 3.0095 -0.5316 -0.8790 29 1 4.5979 3.0181 3.0140 30 1 3.4974 -2.5259 -0.8131 31 1 1.8275 -2.6552 -0.2107 32 1 3.4252 -4.5202 1.1848 33 1 2.3716 -3.7550 -2.1798 34 1 1.8827 -5.4470 -3.8984 35 1 2.0556 -7.8415 -3.3557 36 1 2.6979 -8.5511 -1.0887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490984499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:51 Heat of formation + Delta-G solvation = 71.878341 kcal Electronic energy + Delta-G solvation = -24096.150810 eV Core-core repulsion = 20358.512150 eV Total energy + Delta-G solvation = -3737.638660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.07694 -39.86050 -39.04652 -36.55241 -35.92005 -35.15280 -32.86005 -32.06967 -31.79751 -30.34630 -27.62902 -26.92779 -26.17953 -24.58473 -22.58528 -22.09480 -19.59300 -19.10067 -18.71561 -18.52135 -17.84738 -17.27179 -16.90364 -16.22429 -16.01357 -15.62430 -15.25698 -15.07473 -14.42716 -14.29027 -14.12642 -13.42794 -13.33400 -13.17909 -12.81294 -12.61410 -12.25059 -12.16386 -11.80525 -11.43522 -11.13540 -10.98058 -10.96018 -10.90743 -10.55984 -10.41944 -9.96122 -9.76520 -9.70229 -9.34637 -8.90177 -8.10128 -7.92851 -6.55700 -4.19776 0.09129 1.03628 1.26527 1.56620 2.84281 2.87928 3.02589 3.06441 3.08497 3.17226 3.23420 3.39741 3.96387 4.20302 4.23757 4.49077 4.60527 4.77467 4.81288 4.86234 4.93293 5.13658 5.21972 5.31214 5.39455 5.55967 5.56953 5.75386 5.79710 6.00648 6.17845 6.21449 6.44777 6.78850 7.31183 7.44985 7.77815 7.90440 8.04972 8.23207 8.70026 9.06539 9.41124 10.55579 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.004208 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.254897 B = 6652.337505 C = 7328.166693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.189 3.811 4 N -0.453 5.453 5 C -0.320 4.320 6 H 0.109 0.891 7 C 0.064 3.936 8 N -0.854 5.854 9 Si 0.869 3.131 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.261 1.261 13 C 0.461 3.539 14 O -0.543 6.543 15 C 0.094 3.906 16 N -0.702 5.702 17 C 0.287 3.713 18 C -0.203 4.203 19 C -0.023 4.023 20 C -0.185 4.185 21 C -0.013 4.013 22 C -0.127 4.127 23 N 0.037 4.963 24 O -0.164 6.164 25 O -0.168 6.168 26 H 0.215 0.785 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.277 0.723 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.424 0.576 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 -11.307 -16.885 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.185 4.185 3 C 0.066 3.934 4 N -0.175 5.175 5 C -0.447 4.447 6 H 0.127 0.873 7 C -0.143 4.143 8 N -0.489 5.489 9 Si 0.696 3.304 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.185 1.185 13 C 0.249 3.751 14 O -0.423 6.423 15 C -0.034 4.034 16 N -0.332 5.332 17 C 0.172 3.828 18 C -0.226 4.226 19 C -0.042 4.042 20 C -0.206 4.206 21 C -0.032 4.032 22 C -0.216 4.216 23 N 0.553 4.447 24 O -0.380 6.380 25 O -0.379 6.379 26 H 0.232 0.768 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.269 0.731 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.275 -10.907 -16.824 20.732 hybrid contribution 0.456 0.343 -0.112 0.582 sum -4.818 -10.563 -16.935 20.533 Atomic orbital electron populations 1.24785 0.95703 1.01315 1.00711 1.23656 0.94781 1.00038 1.00055 1.18979 0.84196 1.00482 0.89743 1.43578 1.56642 1.04136 1.13104 1.19053 1.37109 1.01705 0.86832 0.87347 1.25387 0.95859 0.95385 0.97670 1.69716 1.39250 1.06479 1.33475 0.87058 0.80579 0.79241 0.83555 1.19763 1.20613 1.18503 1.19985 0.82714 0.83363 0.89048 1.90629 1.48447 1.69807 1.33408 1.21410 1.02399 0.80692 0.98850 1.45236 1.67275 1.04193 1.16534 1.17544 0.89233 0.85891 0.90093 1.20788 1.09732 1.01345 0.90721 1.21269 0.91544 0.92506 0.98884 1.20848 1.07500 0.96480 0.95766 1.20688 0.92301 0.98976 0.91265 1.20458 1.23410 0.93385 0.84344 1.43518 0.98331 0.99841 1.03022 1.94498 1.34264 1.16656 1.92619 1.94571 1.57849 1.54167 1.31308 0.76829 0.88175 0.89613 0.91224 0.89412 0.89093 0.73138 0.83848 0.84352 0.84321 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.12 19.25 29.55 0.57 -2.55 16 2 C -0.18 -3.21 12.96 -37.12 -0.48 -3.69 16 3 C 0.19 3.50 4.25 -6.83 -0.03 3.47 16 4 N -0.45 -10.37 2.12 -117.93 -0.25 -10.62 16 5 C -0.32 -8.73 9.34 -14.93 -0.14 -8.87 16 6 H 0.11 3.37 7.95 -52.49 -0.42 2.95 16 7 C 0.06 1.70 5.30 -17.46 -0.09 1.61 16 8 N -0.85 -23.86 13.96 55.50 0.77 -23.09 16 9 Si 0.87 18.93 24.96 -169.99 -4.24 14.68 16 10 H -0.27 -5.40 6.72 56.52 0.38 -5.02 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 13 C 0.46 10.21 7.64 -10.99 -0.08 10.12 16 14 O -0.54 -14.24 15.56 5.54 0.09 -14.16 16 15 C 0.09 1.52 4.04 -5.20 -0.02 1.50 16 16 N -0.70 -11.73 5.48 -59.81 -0.33 -12.06 16 17 C 0.29 3.98 6.61 -83.79 -0.55 3.42 16 18 C -0.20 -2.08 9.32 -39.38 -0.37 -2.45 16 19 C -0.02 -0.18 10.04 -39.61 -0.40 -0.57 16 20 C -0.18 -1.45 10.04 -39.55 -0.40 -1.84 16 21 C -0.01 -0.13 9.65 -39.61 -0.38 -0.52 16 22 C -0.13 -1.78 6.53 -79.76 -0.52 -2.30 16 23 N 0.04 0.62 4.31 34.06 0.15 0.77 16 24 O -0.16 -2.76 18.91 -29.46 -0.56 -3.32 16 25 O -0.17 -3.23 16.66 -29.46 -0.49 -3.72 16 26 H 0.21 2.32 7.80 -54.10 -0.42 1.90 16 27 H 0.10 1.97 3.66 -51.93 -0.19 1.78 16 28 H 0.09 1.23 6.68 -51.93 -0.35 0.88 16 29 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.09 1.17 7.01 -51.93 -0.36 0.80 16 31 H 0.09 1.30 7.50 -51.93 -0.39 0.91 16 32 H 0.42 8.27 4.97 -40.82 -0.20 8.07 16 33 H 0.14 1.23 6.74 -52.49 -0.35 0.88 16 34 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.14 1.26 7.99 -52.49 -0.42 0.84 16 LS Contribution 322.58 15.07 4.86 4.86 Total: -1.00 -32.93 322.58 -6.01 -38.93 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -3.11 Total: 10.38 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.90 Total: -2.67 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.34 Total: -44.99 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.96 Total: -21.20 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.24 Total: 14.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.93 -6.01 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490984499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.811 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds