Wall clock time and date at job start Tue Mar 31 2020 03:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21566 * 119.99800 * 179.86389 * 13 12 11 15 15 C 1.47740 * 119.99881 * 359.86698 * 13 12 11 16 16 C 1.41224 * 126.33986 * 180.02562 * 15 13 12 17 17 C 1.36669 * 105.43916 * 179.97438 * 16 15 13 18 18 C 1.48071 * 126.59178 * 179.97438 * 17 16 15 19 19 C 1.46788 * 127.12582 * 180.02562 * 18 17 16 20 20 C 1.34343 * 106.02379 * 179.97438 * 19 18 17 21 21 O 1.34156 * 109.03157 * 359.97438 * 20 19 18 22 22 C 1.34103 * 110.76181 * 359.76568 * 21 20 19 23 23 N 1.36315 * 106.81531 * 0.02562 * 17 16 15 24 24 H 0.96996 * 125.00610 * 179.97438 * 23 17 16 25 25 N 1.28452 * 109.99730 * 359.75843 * 23 17 16 26 26 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 29 29 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 30 30 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 31 31 H 1.08006 * 127.28011 * 359.96145 * 16 15 13 32 32 H 1.08000 * 126.98734 * 359.93568 * 19 18 17 33 33 H 1.08007 * 125.48140 * 180.02562 * 20 19 18 34 34 H 1.08006 * 125.77793 * 180.24048 * 22 21 20 35 35 H 1.09004 * 113.77444 * 221.15143 * 26 12 11 36 36 H 1.09004 * 113.87147 * 89.76886 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3861 -6.4951 0.9224 15 6 -0.2010 -5.7124 2.4472 16 6 -0.6683 -6.9455 2.9528 17 6 -1.6228 -6.6220 3.8759 18 6 -2.4184 -7.5677 4.6915 19 6 -3.4460 -7.2335 5.6851 20 6 -3.8919 -8.4060 6.1660 21 8 -3.2348 -9.4060 5.5595 22 6 -2.3534 -8.9253 4.6704 23 7 -1.7023 -5.2614 3.9007 24 1 -2.3006 -4.7492 4.4668 25 7 -0.8650 -4.7572 3.0672 26 6 2.1610 -3.7398 0.0582 27 1 -0.4850 0.8400 0.0004 28 1 -0.3471 -1.8018 -1.0246 29 1 1.3268 -2.4870 2.2200 30 1 -0.3218 -2.8255 1.5318 31 1 -0.3409 -7.9350 2.6696 32 1 -3.7759 -6.2459 5.9717 33 1 -4.6570 -8.5243 6.9191 34 1 -1.7003 -9.5167 4.0458 35 1 2.2032 -4.2939 -0.8796 36 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527254127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:58 Heat of formation + Delta-G solvation = 45.432716 kcal Electronic energy + Delta-G solvation = -23629.046718 eV Core-core repulsion = 19890.261289 eV Total energy + Delta-G solvation = -3738.785429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.82226 -42.21741 -39.21546 -37.13801 -33.95519 -33.77502 -32.16204 -31.79763 -30.98235 -29.05034 -28.38051 -25.56371 -25.13201 -23.32433 -22.79742 -21.80330 -20.41187 -19.74672 -18.89614 -18.01024 -17.33885 -16.82943 -16.32139 -16.02849 -15.51794 -15.38555 -15.01080 -14.87767 -14.32181 -14.04121 -13.85129 -13.32720 -13.16266 -12.96438 -12.52969 -12.49968 -12.18682 -11.91816 -11.49924 -11.05758 -11.03842 -10.78323 -10.66747 -10.44784 -10.20950 -9.75263 -9.40894 -9.24862 -9.21938 -8.70890 -8.33213 -8.32152 -7.75479 -6.33336 -4.43215 1.11512 1.67861 2.00501 2.67981 2.85503 2.87703 3.18284 3.25885 3.28693 3.57842 3.92593 4.19623 4.23730 4.38631 4.67669 4.70535 4.90948 5.07265 5.21619 5.37140 5.59021 5.68241 5.74245 5.87943 5.97415 6.08687 6.23618 6.38922 6.47134 6.66781 6.71312 6.76336 6.87430 7.04475 7.18828 7.68613 7.88861 7.97733 8.50087 8.59418 8.82226 9.27336 9.49505 10.73408 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.027000 B = 0.003096 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.773393 B = 9041.965380 C = 9748.920889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.235 3.765 10 O -0.572 6.572 11 C 0.091 3.909 12 N -0.617 5.617 13 C 0.611 3.389 14 O -0.559 6.559 15 C 0.007 3.993 16 C -0.168 4.168 17 C 0.078 3.922 18 C -0.124 4.124 19 C -0.212 4.212 20 C -0.028 4.028 21 O -0.178 6.178 22 C 0.001 3.999 23 N -0.381 5.381 24 H 0.443 0.557 25 N -0.234 5.234 26 C 0.113 3.887 27 H 0.272 0.728 28 H 0.391 0.609 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.206 0.794 34 H 0.213 0.787 35 H 0.072 0.928 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 -11.676 12.690 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.193 3.807 10 O -0.384 6.384 11 C -0.031 4.031 12 N -0.349 5.349 13 C 0.398 3.602 14 O -0.438 6.438 15 C -0.154 4.154 16 C -0.196 4.196 17 C -0.047 4.047 18 C -0.127 4.127 19 C -0.232 4.232 20 C -0.094 4.094 21 O -0.073 6.073 22 C -0.068 4.068 23 N -0.096 5.096 24 H 0.288 0.712 25 N -0.070 5.070 26 C -0.008 4.008 27 H 0.082 0.918 28 H 0.246 0.754 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.180 0.820 32 H 0.170 0.830 33 H 0.223 0.777 34 H 0.229 0.771 35 H 0.090 0.910 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.738 -11.936 12.425 18.887 hybrid contribution -0.258 1.192 0.605 1.361 sum -7.995 -10.744 13.031 18.686 Atomic orbital electron populations 1.69418 1.06124 1.28007 1.50137 1.25062 0.95014 0.99784 0.93213 0.86354 0.79766 0.82101 0.78401 1.20309 1.21022 1.19599 1.21489 0.93888 0.89952 1.52029 0.91075 1.19898 0.85706 0.91080 0.83976 1.86057 1.47072 1.49711 1.55555 1.24304 1.00751 0.76448 1.01618 1.50082 1.39403 1.04815 1.40642 1.16509 0.81102 0.82299 0.80304 1.90719 1.56252 1.39474 1.57318 1.21936 1.01456 0.90330 1.01660 1.21605 0.99297 0.99366 0.99347 1.18916 1.00760 0.83830 1.01173 1.19239 1.00568 0.92135 1.00806 1.22805 1.00216 0.99651 1.00526 1.23886 0.99844 0.85103 1.00615 1.83923 1.42848 1.36691 1.43875 1.24109 0.95016 0.93032 0.94683 1.43557 1.30269 1.04517 1.31270 0.71224 1.73773 1.03464 1.25795 1.03921 1.23493 0.93278 0.92865 0.91180 0.91803 0.75443 0.90309 0.90533 0.81985 0.83050 0.77735 0.77070 0.90951 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.03 11.21 55.43 0.62 -22.40 16 2 C 0.07 1.81 5.40 -17.82 -0.10 1.71 16 3 Si 0.91 19.66 29.54 -169.99 -5.02 14.64 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.54 -13.62 8.61 -34.44 -0.30 -13.91 16 8 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.24 5.79 1.40 -90.85 -0.13 5.66 16 10 O -0.57 -15.08 13.49 -35.23 -0.48 -15.56 16 11 C 0.09 2.09 7.30 -2.84 -0.02 2.07 16 12 N -0.62 -13.96 3.61 -179.28 -0.65 -14.60 16 13 C 0.61 13.56 8.06 -12.38 -0.10 13.46 16 14 O -0.56 -13.36 17.64 5.31 0.09 -13.27 16 15 C 0.01 0.13 7.07 -82.85 -0.59 -0.46 16 16 C -0.17 -2.60 10.56 -39.02 -0.41 -3.01 16 17 C 0.08 1.02 7.19 -82.41 -0.59 0.42 16 18 C -0.12 -1.30 6.32 -103.23 -0.65 -1.95 16 19 C -0.21 -1.73 11.15 -37.50 -0.42 -2.15 16 20 C -0.03 -0.19 12.04 29.36 0.35 0.16 16 21 O -0.18 -1.52 10.55 6.64 0.07 -1.45 16 22 C 0.00 0.01 11.88 29.91 0.36 0.36 16 23 N -0.38 -5.12 6.90 33.32 0.23 -4.89 16 24 H 0.44 4.30 8.96 -190.45 -1.71 2.60 16 25 N -0.23 -4.12 10.61 33.37 0.35 -3.77 16 26 C 0.11 2.55 8.23 -2.97 -0.02 2.53 16 27 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.39 10.36 6.61 45.56 0.30 10.67 16 29 H 0.08 1.76 8.09 -51.93 -0.42 1.34 16 30 H 0.08 1.81 7.52 -51.92 -0.39 1.42 16 31 H 0.16 2.18 8.06 -52.48 -0.42 1.75 16 32 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.21 0.60 8.06 -52.48 -0.42 0.18 16 34 H 0.21 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -31.97 325.83 -6.78 -38.75 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -4.30 Total: 12.73 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -2.62 Total: 4.91 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.56 Total: -45.67 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.31 Total: -30.27 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.97 -6.78 -38.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527254127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.184 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds