Wall clock time and date at job start Tue Mar 31 2020 04:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 117.00165 * 2 1 4 4 O 1.20823 * 120.00171 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99862 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.46754 * 179.97438 * 5 3 2 7 7 C 1.36912 * 120.00550 * 274.39888 * 6 5 3 8 8 H 1.08004 * 120.00181 * 124.10831 * 7 6 5 9 9 C 1.38956 * 120.00068 * 304.11966 * 7 6 5 10 10 N 1.31434 * 120.00104 * 4.06892 * 9 7 6 11 11 Si 1.86803 * 120.00000 * 184.06602 * 9 7 6 12 12 H 1.48503 * 109.46692 * 95.00093 * 11 9 7 13 13 H 1.48498 * 109.47215 * 214.99479 * 11 9 7 14 14 H 1.48502 * 109.47300 * 335.00206 * 11 9 7 15 15 C 1.34780 * 120.00170 * 94.40509 * 6 5 3 16 16 O 1.21829 * 119.99225 * 3.01179 * 15 6 5 17 17 C 1.41663 * 120.00536 * 183.01627 * 15 6 5 18 18 C 1.38663 * 126.79554 * 353.10331 * 17 15 6 19 19 N 1.32292 * 108.20509 * 180.02562 * 18 17 15 20 20 C 1.33227 * 109.83435 * 0.02562 * 19 18 17 21 21 C 1.40617 * 131.80799 * 180.02562 * 20 19 18 22 22 C 1.36313 * 119.38868 * 179.97438 * 21 20 19 23 23 C 1.40159 * 119.61418 * 359.81903 * 22 21 20 24 24 C 1.35277 * 120.12075 * 0.40198 * 23 22 21 25 25 N 1.35969 * 120.63697 * 359.55629 * 24 23 22 26 26 H 1.09000 * 109.47320 * 59.99734 * 1 2 3 27 27 H 1.08999 * 109.47494 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47069 * 300.00034 * 1 2 3 29 29 H 1.09004 * 109.46914 * 60.00337 * 5 3 2 30 30 H 1.08997 * 109.47346 * 299.99738 * 5 3 2 31 31 H 0.96995 * 120.00135 * 180.02562 * 10 9 7 32 32 H 1.07998 * 125.89140 * 0.02562 * 18 17 15 33 33 H 1.08001 * 120.30503 * 359.97315 * 21 20 19 34 34 H 1.08006 * 120.19239 * 179.97438 * 22 21 20 35 35 H 1.08006 * 119.94194 * 180.23738 * 23 22 21 36 36 H 1.08003 * 119.68032 * 179.84119 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6796 -0.0011 7 6 4.0882 3.3617 -1.1834 8 1 3.5379 4.2796 -1.3288 9 6 4.9040 2.8729 -2.1965 10 7 5.5106 1.7160 -2.0512 11 14 5.1387 3.8600 -3.7650 12 1 6.3709 4.6813 -3.6532 13 1 5.2642 2.9337 -4.9187 14 1 3.9676 4.7499 -3.9697 15 6 4.2592 3.3008 1.1624 16 8 4.2179 2.6794 2.2095 17 6 4.5988 4.6761 1.1679 18 6 4.8171 5.4821 0.0608 19 7 5.1109 6.6994 0.4873 20 6 5.0956 6.7277 1.8192 21 6 5.3362 7.7650 2.7376 22 6 5.2501 7.5088 4.0737 23 6 4.9200 6.2190 4.5118 24 6 4.6965 5.2332 3.6128 25 7 4.7796 5.4805 2.2784 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9557 0.7809 -0.8909 30 1 3.9564 0.7805 0.8891 31 1 6.0804 1.3750 -2.7582 32 1 4.7576 5.1698 -0.9713 33 1 5.5869 8.7555 2.3876 34 1 5.4327 8.2958 4.7905 35 1 4.8466 6.0112 5.5691 36 1 4.4451 4.2413 3.9583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535026239.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:00 Heat of formation + Delta-G solvation = -5.277125 kcal Electronic energy + Delta-G solvation = -24893.769849 eV Core-core repulsion = 21152.785477 eV Total energy + Delta-G solvation = -3740.984372 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.31878 -39.82346 -38.48782 -36.89426 -35.82674 -34.92659 -33.12393 -31.80572 -30.23786 -29.39187 -27.96182 -26.37495 -25.24461 -23.55525 -22.64483 -21.51590 -20.67379 -19.64247 -18.22087 -16.99512 -16.59167 -16.43657 -16.13673 -15.72598 -15.64901 -15.51899 -15.03938 -14.71697 -14.39454 -14.05567 -13.59831 -13.06980 -12.87589 -12.82480 -12.65370 -12.16869 -11.79713 -11.66543 -11.48798 -11.42382 -11.34235 -11.15988 -10.72664 -10.60276 -10.45537 -10.27111 -9.78640 -9.75464 -9.18108 -8.87569 -8.39441 -7.72700 -7.31385 -6.59312 -4.52010 1.06006 1.33526 2.83674 2.95998 3.02857 3.07267 3.15014 3.18276 3.37003 3.89795 3.95413 4.37355 4.55376 4.68527 4.79761 4.91249 5.10477 5.15278 5.42016 5.47633 5.48416 5.59059 5.79959 5.88016 5.97495 6.11281 6.17414 6.29332 6.31986 6.39444 6.70479 6.85725 6.98485 7.22117 7.25968 7.48788 7.69822 8.09062 8.33431 8.53631 8.79284 9.11597 9.59576 10.42658 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.012801 B = 0.006238 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.758987 B = 4487.568721 C = 6085.682364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.445 3.555 4 O -0.505 6.505 5 C 0.125 3.875 6 N -0.413 5.413 7 C -0.352 4.352 8 H 0.099 0.901 9 C 0.055 3.945 10 N -0.859 5.859 11 Si 0.911 3.089 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.261 1.261 15 C 0.572 3.428 16 O -0.611 6.611 17 C -0.101 4.101 18 C 0.106 3.894 19 N -0.512 5.512 20 C 0.221 3.779 21 C -0.091 4.091 22 C -0.101 4.101 23 C -0.167 4.167 24 C 0.086 3.914 25 N -0.332 5.332 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.145 0.855 30 H 0.103 0.897 31 H 0.277 0.723 32 H 0.225 0.775 33 H 0.148 0.852 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.031 3.170 6.133 7.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.287 3.713 4 O -0.391 6.391 5 C 0.000 4.000 6 N -0.130 5.130 7 C -0.479 4.479 8 H 0.116 0.884 9 C -0.153 4.153 10 N -0.494 5.494 11 Si 0.735 3.265 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.185 1.185 15 C 0.364 3.636 16 O -0.499 6.499 17 C -0.214 4.214 18 C -0.050 4.050 19 N -0.232 5.232 20 C -0.019 4.019 21 C -0.111 4.111 22 C -0.125 4.125 23 C -0.188 4.188 24 C -0.039 4.039 25 N -0.003 5.003 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.162 0.838 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.240 0.760 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.007 3.588 5.992 7.267 hybrid contribution -0.356 -0.356 -0.311 0.592 sum -2.363 3.232 5.681 6.950 Atomic orbital electron populations 1.23086 0.78117 1.02619 1.01967 1.86551 1.22189 1.34849 1.84943 1.25319 0.93571 0.80849 0.71532 1.90585 1.67045 1.36398 1.45052 1.21129 0.84137 0.87691 1.07083 1.42408 1.57104 1.08544 1.04986 1.19550 1.27386 1.09047 0.91939 0.88381 1.25711 0.93960 0.95925 0.99724 1.69660 1.27950 1.17259 1.34504 0.86137 0.79934 0.79896 0.80490 1.19156 1.20231 1.18479 1.15674 0.78796 0.84645 0.84436 1.90654 1.59376 1.67809 1.32084 1.19926 1.21611 0.94989 0.84891 1.25056 0.92683 0.86132 1.01139 1.70645 1.23828 1.23550 1.05219 1.21134 1.03984 0.85094 0.91710 1.20214 1.02334 0.97570 0.90992 1.20987 0.99368 0.96965 0.95173 1.20766 1.05507 0.92703 0.99790 1.22025 0.99124 1.02096 0.80686 1.42502 1.41491 1.10683 1.05611 0.92421 0.88895 0.92633 0.83752 0.87884 0.91203 0.75968 0.83479 0.84426 0.83524 0.81088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.60 16 2 O -0.37 -6.99 10.56 -39.26 -0.41 -7.40 16 3 C 0.45 9.95 8.00 36.01 0.29 10.24 16 4 O -0.50 -12.52 16.11 -18.75 -0.30 -12.82 16 5 C 0.12 2.89 5.71 -5.19 -0.03 2.86 16 6 N -0.41 -10.32 1.95 -119.31 -0.23 -10.56 16 7 C -0.35 -8.64 6.09 -15.02 -0.09 -8.73 16 8 H 0.10 2.41 5.95 -52.48 -0.31 2.10 16 9 C 0.06 1.31 5.37 -17.46 -0.09 1.22 16 10 N -0.86 -21.02 11.43 55.50 0.63 -20.39 16 11 Si 0.91 18.47 29.04 -169.99 -4.94 13.53 16 12 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 13 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 14 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 15 C 0.57 14.51 7.44 -14.95 -0.11 14.39 16 16 O -0.61 -15.90 14.87 5.07 0.08 -15.83 16 17 C -0.10 -2.40 6.75 -83.48 -0.56 -2.96 16 18 C 0.11 2.42 10.10 -17.20 -0.17 2.25 16 19 N -0.51 -11.03 11.25 -12.24 -0.14 -11.17 16 20 C 0.22 4.30 7.77 -156.02 -1.21 3.09 16 21 C -0.09 -1.32 10.10 -39.38 -0.40 -1.72 16 22 C -0.10 -1.20 10.07 -39.55 -0.40 -1.60 16 23 C -0.17 -2.14 10.00 -39.92 -0.40 -2.54 16 24 C 0.09 1.48 10.51 -16.77 -0.18 1.30 16 25 N -0.33 -6.87 2.96 -60.13 -0.18 -7.05 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 29 H 0.15 3.39 5.97 -51.93 -0.31 3.08 16 30 H 0.10 2.33 7.26 -51.93 -0.38 1.95 16 31 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 32 H 0.22 5.03 4.03 -52.49 -0.21 4.82 16 33 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 36 H 0.17 3.01 6.82 -52.48 -0.36 2.65 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -31.33 314.86 -6.28 -37.61 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -3.24 Total: 9.94 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: -2.29 Total: 19.39 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.09 Total: -49.16 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.64 Total: -36.05 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.94 Total: 13.53 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.33 -6.28 -37.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535026239.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.332 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds