Wall clock time and date at job start Tue Mar 31 2020 04:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99541 * 2 1 4 4 C 1.53002 * 109.47151 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47366 * 64.99509 * 4 3 2 6 6 C 1.46503 * 120.00370 * 275.00314 * 5 4 3 7 7 C 1.50698 * 109.47071 * 275.00338 * 6 5 4 8 8 H 1.08004 * 119.99987 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00309 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00285 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00026 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47379 * 89.99948 * 11 9 7 13 13 H 1.48500 * 109.47472 * 210.00297 * 11 9 7 14 14 H 1.48503 * 109.47164 * 330.00077 * 11 9 7 15 15 S 1.65601 * 120.00079 * 94.99707 * 5 4 3 16 16 O 1.42101 * 106.40131 * 156.45733 * 15 5 4 17 17 O 1.42097 * 106.40079 * 23.54605 * 15 5 4 18 18 C 1.76194 * 107.22383 * 270.00191 * 15 5 4 19 19 C 1.39866 * 125.89916 * 150.01561 * 18 15 5 20 20 C 1.35320 * 107.91898 * 179.97438 * 19 18 15 21 21 N 1.34951 * 107.74569 * 359.97438 * 20 19 18 22 22 C 1.46504 * 126.03463 * 180.02562 * 21 20 19 23 23 N 1.30844 * 125.89475 * 329.97576 * 18 15 5 24 24 H 1.08998 * 109.47612 * 299.99948 * 1 2 3 25 25 H 1.09002 * 109.47383 * 60.01006 * 1 2 3 26 26 H 1.09008 * 109.46753 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47173 * 59.99482 * 3 2 1 28 28 H 1.09006 * 109.46468 * 299.99653 * 3 2 1 29 29 H 1.08999 * 109.46768 * 304.99332 * 4 3 2 30 30 H 1.08993 * 109.46891 * 184.99757 * 4 3 2 31 31 H 1.09001 * 109.46911 * 34.99583 * 6 5 4 32 32 H 1.08994 * 109.47533 * 154.99874 * 6 5 4 33 33 H 0.97003 * 119.99722 * 180.02562 * 10 9 7 34 34 H 1.07993 * 126.04141 * 359.97438 * 19 18 15 35 35 H 1.07996 * 126.12765 * 180.02562 * 20 19 18 36 36 H 1.09005 * 109.46927 * 270.02579 * 22 21 20 37 37 H 1.08994 * 109.47314 * 30.02415 * 22 21 20 38 38 H 1.08998 * 109.46715 * 150.02896 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1849 -0.0006 5 7 3.9757 0.5646 -1.2526 6 6 4.0005 -0.8948 -1.3780 7 6 5.2995 -1.4243 -0.8273 8 1 6.0333 -0.7419 -0.4245 9 6 5.5511 -2.7798 -0.8375 10 7 6.6849 -3.2418 -0.3573 11 14 4.2816 -3.9602 -1.5335 12 1 4.5297 -4.1550 -2.9845 13 1 4.3840 -5.2662 -0.8341 14 1 2.9215 -3.3979 -1.3350 15 16 4.4452 1.5131 -2.5263 16 8 5.3007 0.7116 -3.3295 17 8 4.8425 2.7601 -1.9728 18 6 3.0091 1.8337 -3.4954 19 6 2.7761 2.9801 -4.2620 20 6 1.5666 2.8464 -4.8540 21 7 1.0528 1.6572 -4.4758 22 6 -0.2425 1.1087 -4.8852 23 7 1.9767 1.0400 -3.6227 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0278 0.0005 27 1 1.6884 1.8465 0.8899 28 1 1.6884 1.8464 -0.8901 29 1 3.8514 0.5686 0.8410 30 1 3.9783 2.1767 0.0889 31 1 3.1679 -1.3217 -0.8188 32 1 3.9120 -1.1708 -2.4287 33 1 6.8621 -4.1955 -0.3648 34 1 3.4435 3.8231 -4.3635 35 1 1.0971 3.5626 -5.5119 36 1 -1.0101 1.4231 -4.1780 37 1 -0.4938 1.4746 -5.8806 38 1 -0.1873 0.0202 -4.9014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592028751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:43 Heat of formation + Delta-G solvation = -22.457113 kcal Electronic energy + Delta-G solvation = -24206.086943 eV Core-core repulsion = 20599.801542 eV Total energy + Delta-G solvation = -3606.285401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24210 -37.83299 -36.63350 -35.44421 -35.23478 -33.51329 -32.35905 -30.35533 -29.74774 -27.20309 -27.13460 -25.79562 -22.63589 -22.12343 -21.58359 -21.20030 -18.25758 -17.61583 -16.95629 -16.75856 -16.14392 -15.85295 -15.70039 -15.56483 -15.14394 -14.64550 -14.09907 -14.07827 -13.75735 -13.50327 -13.05103 -12.80409 -12.47933 -12.32391 -12.25521 -12.02090 -11.74096 -11.54700 -11.31289 -11.24876 -11.13075 -10.86276 -10.83237 -10.53014 -10.22864 -10.06748 -9.81312 -9.41096 -9.37279 -8.85046 -8.43569 -8.02299 -5.94189 -3.91441 0.88683 1.53949 2.30064 2.36026 3.39296 3.44971 3.50737 3.51287 4.08007 4.20218 4.36076 4.53998 4.60058 4.84002 5.06543 5.12185 5.17171 5.30207 5.38289 5.39909 5.48060 5.48619 5.56403 5.59979 5.63924 5.73174 5.80462 6.17839 6.29154 6.51785 6.76875 7.07408 7.25804 7.29634 7.42873 7.55333 7.76446 8.63282 9.10174 9.66408 11.19373 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.006617 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.437191 B = 4230.396655 C = 4592.135555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.043 3.957 4 C 0.122 3.878 5 N -0.958 5.958 6 C 0.229 3.771 7 C -0.526 4.526 8 H 0.078 0.922 9 C 0.074 3.926 10 N -0.899 5.899 11 Si 0.867 3.133 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.259 1.259 15 S 2.708 3.292 16 O -0.927 6.927 17 O -0.961 6.961 18 C -0.476 4.476 19 C -0.200 4.200 20 C 0.043 3.957 21 N -0.365 5.365 22 C 0.095 3.905 23 N -0.180 5.180 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.040 0.960 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.509 12.513 -6.095 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.284 6.284 3 C -0.036 4.036 4 C -0.005 4.005 5 N -0.798 5.798 6 C 0.106 3.894 7 C -0.566 4.566 8 H 0.096 0.904 9 C -0.128 4.128 10 N -0.538 5.538 11 Si 0.694 3.306 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.184 1.184 15 S 2.789 3.211 16 O -0.916 6.916 17 O -0.951 6.951 18 C -0.721 4.721 19 C -0.230 4.230 20 C -0.102 4.102 21 N -0.150 5.150 22 C -0.046 4.046 23 N -0.006 5.006 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.178 0.822 35 H 0.198 0.802 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.174 11.317 -6.004 21.426 hybrid contribution -1.424 0.295 -0.996 1.763 sum -18.598 11.612 -7.000 23.016 Atomic orbital electron populations 1.22651 0.82608 1.02206 0.98863 1.88095 1.18214 1.27034 1.95084 1.23148 0.95722 0.85252 0.99429 1.21382 0.90667 0.99681 0.88757 1.56967 1.81542 1.18013 1.23229 1.19566 0.98852 0.73632 0.97329 1.21417 1.01708 0.93068 1.40380 0.90364 1.24793 0.95186 0.97993 0.94824 1.69902 1.23563 1.13834 1.46512 0.86978 0.83124 0.80840 0.79705 1.20062 1.21226 1.18360 1.02018 0.72909 0.72963 0.73212 1.93649 1.60380 1.68375 1.69223 1.93531 1.79800 1.44061 1.77675 1.35835 1.17822 1.01592 1.16899 1.21140 0.98861 0.99675 1.03369 1.22583 0.95923 0.89917 1.01790 1.49067 1.15936 1.14264 1.35762 1.21969 0.80107 1.01762 1.00780 1.77544 0.97791 1.18195 1.07032 0.94775 0.95050 0.90051 0.92869 0.94209 0.87843 0.88317 0.92833 0.95406 0.92730 0.82233 0.80164 0.90391 0.89207 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.25 9.02 -35.23 -0.32 -6.56 16 3 C 0.04 0.66 6.28 37.16 0.23 0.89 16 4 C 0.12 2.14 6.13 -4.04 -0.02 2.12 16 5 N -0.96 -20.44 2.76 -115.67 -0.32 -20.76 16 6 C 0.23 5.71 4.01 -5.19 -0.02 5.69 16 7 C -0.53 -15.39 9.94 -34.44 -0.34 -15.73 16 8 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.07 2.21 5.47 -17.82 -0.10 2.12 16 10 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 11 Si 0.87 22.11 27.47 -169.99 -4.67 17.44 16 12 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 15 S 2.71 56.35 5.79 -107.50 -0.62 55.72 16 16 O -0.93 -23.00 16.99 -57.18 -0.97 -23.97 16 17 O -0.96 -19.65 16.53 -57.18 -0.94 -20.60 16 18 C -0.48 -8.45 7.20 -17.36 -0.13 -8.57 16 19 C -0.20 -2.84 10.71 -40.01 -0.43 -3.27 16 20 C 0.04 0.48 11.49 -17.22 -0.20 0.28 16 21 N -0.37 -4.61 4.01 -68.16 -0.27 -4.88 16 22 C 0.10 0.71 11.47 59.85 0.69 1.39 16 23 N -0.18 -3.10 12.58 31.27 0.39 -2.71 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.97 8.14 -51.92 -0.42 0.54 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.10 1.88 8.11 -51.93 -0.42 1.45 16 30 H 0.10 1.54 6.91 -51.93 -0.36 1.18 16 31 H 0.05 1.32 5.66 -51.93 -0.29 1.03 16 32 H 0.03 0.72 7.04 -51.93 -0.37 0.35 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 34 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -38.48 338.89 -6.31 -44.78 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.26 Total: -2.52 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 0.80 Total: -13.55 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.57 Total: -55.86 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -2.23 Total: -51.13 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Atomic # 16 Polarization: 56.35 SS G_CDS: -0.62 Total: 55.72 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.48 -6.31 -44.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592028751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.327 kcal (2) G-P(sol) polarization free energy of solvation -38.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds