Wall clock time and date at job start Tue Mar 31 2020 03:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20826 * 119.99712 * 359.72483 * 3 2 1 5 5 C 1.50700 * 120.00068 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.49524 * 300.06708 * 5 3 2 7 7 C 1.53039 * 109.49900 * 179.97438 * 5 3 2 8 8 C 1.53039 * 109.53768 * 178.68430 * 7 5 3 9 9 H 1.08998 * 109.49412 * 301.41415 * 8 7 5 10 10 O 1.42897 * 109.49618 * 181.35028 * 8 7 5 11 11 C 1.53191 * 109.31162 * 61.36796 * 8 7 5 12 12 N 1.46925 * 108.77689 * 305.36130 * 11 8 7 13 13 C 1.34774 * 120.63582 * 233.61566 * 12 11 8 14 14 O 1.21272 * 120.00198 * 179.97438 * 13 12 11 15 15 C 1.50703 * 119.99668 * 359.97438 * 13 12 11 16 16 S 1.80997 * 109.47305 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00139 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00430 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00039 * 179.97438 * 17 16 15 20 20 N 1.31635 * 119.99889 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00131 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47013 * 90.00525 * 21 19 17 23 23 H 1.48495 * 109.47613 * 210.00358 * 21 19 17 24 24 H 1.48498 * 109.47545 * 330.00514 * 21 19 17 25 25 C 1.46930 * 118.73414 * 53.60928 * 12 11 8 26 26 H 1.09012 * 109.47257 * 300.00032 * 1 2 3 27 27 H 1.08996 * 109.47465 * 60.00089 * 1 2 3 28 28 H 1.08995 * 109.47281 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46101 * 298.70600 * 7 5 3 30 30 H 1.08998 * 109.45591 * 58.67564 * 7 5 3 31 31 H 0.96697 * 114.00046 * 180.02562 * 10 8 7 32 32 H 1.08997 * 109.58566 * 65.15021 * 11 8 7 33 33 H 1.09005 * 109.58279 * 185.57617 * 11 8 7 34 34 H 1.08997 * 109.47284 * 300.00544 * 15 13 12 35 35 H 1.09003 * 109.46955 * 60.00502 * 15 13 12 36 36 H 0.96998 * 120.00092 * 179.97438 * 20 19 17 37 37 H 1.09005 * 109.58250 * 186.60340 * 25 12 11 38 38 H 1.08995 * 109.58707 * 66.18634 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 1 3.9569 0.7797 0.8884 7 6 4.0009 2.7423 -0.0011 8 6 5.5288 2.8236 0.0314 9 1 5.9013 2.3141 0.9200 10 8 5.9329 4.1939 0.0626 11 6 6.0987 2.1502 -1.2209 12 7 5.5689 0.7823 -1.3050 13 6 6.4016 -0.2704 -1.4270 14 8 5.9518 -1.3946 -1.4950 15 6 7.8915 -0.0504 -1.4791 16 16 8.7314 -1.6451 -1.6451 17 6 10.4084 -1.1056 -1.6797 18 1 10.6387 -0.0530 -1.6060 19 6 11.4336 -2.0334 -1.8006 20 7 11.1530 -3.3164 -1.8899 21 14 13.2114 -1.4614 -1.8380 22 1 13.7473 -1.4201 -0.4536 23 1 14.0180 -2.4050 -2.6529 24 1 13.2824 -0.1045 -2.4369 25 6 4.1140 0.5839 -1.2533 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.6304 3.2305 -0.9025 30 1 3.5920 3.2424 0.8769 31 1 6.8913 4.3209 0.0839 32 1 5.8007 2.7125 -2.1058 33 1 7.1863 2.1174 -1.1553 34 1 8.1362 0.5795 -2.3343 35 1 8.2188 0.4392 -0.5618 36 1 11.8694 -3.9648 -1.9747 37 1 3.8920 -0.4823 -1.2091 38 1 3.6542 1.0184 -2.1409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592908982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:23 Heat of formation + Delta-G solvation = -169.274599 kcal Electronic energy + Delta-G solvation = -22681.854009 eV Core-core repulsion = 19036.909372 eV Total energy + Delta-G solvation = -3644.944636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12305 -39.90399 -38.03285 -36.81776 -35.78776 -33.29762 -32.47652 -30.54046 -29.35092 -27.97179 -25.67786 -25.38739 -24.28927 -21.99495 -20.56991 -19.33266 -18.12911 -17.68103 -17.59020 -16.93543 -16.82492 -16.42550 -15.86190 -15.40782 -14.86913 -14.84646 -14.45084 -14.07783 -13.89362 -13.57761 -13.43863 -13.25458 -12.90208 -12.62171 -12.57809 -12.31821 -12.04234 -11.58680 -11.43396 -11.10440 -11.09376 -11.07338 -11.04881 -10.83251 -10.75545 -10.49540 -9.86099 -9.49788 -9.11342 -8.72619 -8.29505 -6.56397 -6.26424 -3.97841 1.82957 2.28083 2.79248 2.89579 3.18991 3.20837 3.26759 3.47366 3.80832 4.14902 4.24297 4.40605 4.50719 4.59421 4.69421 4.81575 4.82421 4.88951 4.94215 5.05530 5.08924 5.24495 5.28938 5.42108 5.46450 5.52286 5.62884 5.76096 5.78767 5.86351 6.00689 6.05508 6.34995 7.29066 7.36317 7.41025 7.54541 8.29918 8.38977 9.18886 10.80938 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.003296 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.888659 B = 8492.280729 C = 9535.146402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.474 3.526 4 O -0.503 6.503 5 C -0.094 4.094 6 H 0.118 0.882 7 C -0.097 4.097 8 C 0.094 3.906 9 H 0.066 0.934 10 O -0.560 6.560 11 C 0.075 3.925 12 N -0.617 5.617 13 C 0.537 3.463 14 O -0.508 6.508 15 C -0.152 4.152 16 S -0.058 6.058 17 C -0.537 4.537 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.123 3.877 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.384 0.616 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.111 0.889 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.921 12.028 4.052 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.315 3.685 4 O -0.390 6.390 5 C -0.114 4.114 6 H 0.136 0.864 7 C -0.135 4.135 8 C 0.034 3.966 9 H 0.084 0.916 10 O -0.365 6.365 11 C -0.049 4.049 12 N -0.354 5.354 13 C 0.325 3.675 14 O -0.381 6.381 15 C -0.302 4.302 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.001 4.001 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.232 0.768 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.385 10.543 3.904 20.704 hybrid contribution 2.046 1.688 0.116 2.655 sum -15.339 12.231 4.020 20.026 Atomic orbital electron populations 1.23309 0.76041 1.03985 1.02534 1.86556 1.23618 1.32978 1.83712 1.23381 0.91374 0.81485 0.72213 1.90680 1.66991 1.36342 1.45004 1.21385 0.87771 0.99057 1.03182 0.86387 1.21313 0.93763 0.93204 1.05209 1.22050 0.94799 0.82641 0.97110 0.91568 1.86504 1.28568 1.24200 1.97236 1.22522 1.00552 0.82854 0.99003 1.47973 1.05585 1.06445 1.75446 1.20394 0.88367 0.83796 0.74895 1.90713 1.77537 1.22425 1.47422 1.23569 0.93508 1.08356 1.04793 1.85444 1.01214 1.00687 1.95828 1.22843 0.91206 0.95766 1.58662 0.90918 1.24995 0.99560 0.94523 0.94469 1.70013 1.33266 1.00625 1.46271 0.86162 0.82449 0.78579 0.78277 1.20255 1.20732 1.19682 1.21423 0.80657 1.03186 0.94813 0.91869 0.91770 0.87825 0.89883 0.89820 0.76780 0.90319 0.88543 0.89086 0.89188 0.92120 0.87039 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.68 10.50 -39.27 -0.41 -4.09 16 3 C 0.47 5.23 7.26 36.01 0.26 5.49 16 4 O -0.50 -6.55 15.73 -18.75 -0.29 -6.85 16 5 C -0.09 -0.95 2.78 -91.65 -0.25 -1.20 16 6 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 7 C -0.10 -0.96 4.11 -26.69 -0.11 -1.07 16 8 C 0.09 0.87 3.62 -26.61 -0.10 0.77 16 9 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 10 O -0.56 -5.00 13.32 -35.23 -0.47 -5.47 16 11 C 0.07 0.75 5.97 -3.71 -0.02 0.73 16 12 N -0.62 -8.07 2.97 -172.77 -0.51 -8.58 16 13 C 0.54 9.54 7.72 -10.99 -0.08 9.46 16 14 O -0.51 -10.96 15.27 5.56 0.08 -10.88 16 15 C -0.15 -2.88 4.50 36.01 0.16 -2.72 16 16 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 17 C -0.54 -14.79 9.50 30.94 0.29 -14.49 16 18 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.60 13.22 55.49 0.73 -24.86 16 21 Si 0.92 20.87 29.55 -169.99 -5.02 15.84 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.12 1.42 5.65 -3.71 -0.02 1.40 16 26 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 30 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.38 1.93 9.08 45.56 0.41 2.35 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.92 5.93 -51.93 -0.31 0.61 16 34 H 0.09 1.60 7.94 -51.92 -0.41 1.19 16 35 H 0.09 1.54 7.69 -51.92 -0.40 1.14 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.11 1.47 7.01 -51.93 -0.36 1.11 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -35.34 336.56 -6.35 -41.69 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.41 Total: 0.21 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 1.10 Total: 1.65 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.22 Total: -33.44 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -1.09 Total: -27.28 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.34 -6.35 -41.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592908982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.585 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds