Wall clock time and date at job start Tue Mar 31 2020 03:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34231 * 117.00126 * 2 1 4 4 O 1.20833 * 119.99644 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00640 * 179.71955 * 3 2 1 6 6 H 1.09004 * 109.49482 * 60.27741 * 5 3 2 7 7 C 1.53041 * 109.50089 * 180.34082 * 5 3 2 8 8 C 1.53038 * 109.53585 * 181.28884 * 7 5 3 9 9 H 1.09008 * 109.51763 * 178.70047 * 8 7 5 10 10 O 1.42897 * 109.47599 * 58.63689 * 8 7 5 11 11 C 1.53187 * 109.34100 * 298.68021 * 8 7 5 12 12 N 1.46926 * 108.77516 * 54.62597 * 11 8 7 13 13 C 1.34776 * 120.63322 * 126.36953 * 12 11 8 14 14 O 1.21285 * 119.99606 * 180.02562 * 13 12 11 15 15 C 1.50694 * 120.00077 * 0.02562 * 13 12 11 16 16 S 1.80993 * 109.47356 * 179.97438 * 15 13 12 17 17 C 1.76193 * 100.00173 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00255 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00100 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99979 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99919 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46918 * 89.99812 * 21 19 17 23 23 H 1.48501 * 109.47222 * 209.99943 * 21 19 17 24 24 H 1.48499 * 109.47149 * 330.00300 * 21 19 17 25 25 C 1.46933 * 118.73463 * 306.39165 * 12 11 8 26 26 H 1.09007 * 109.46891 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47488 * 299.99586 * 1 2 3 28 28 H 1.08997 * 109.47515 * 60.00401 * 1 2 3 29 29 H 1.08998 * 109.46077 * 301.33914 * 7 5 3 30 30 H 1.09001 * 109.45934 * 61.29981 * 7 5 3 31 31 H 0.96698 * 114.00477 * 180.14329 * 10 8 7 32 32 H 1.08999 * 109.58962 * 294.83903 * 11 8 7 33 33 H 1.08998 * 109.58953 * 174.40911 * 11 8 7 34 34 H 1.09001 * 109.47177 * 300.00594 * 15 13 12 35 35 H 1.09003 * 109.47169 * 59.99902 * 15 13 12 36 36 H 0.97003 * 120.00104 * 179.97438 * 20 19 17 37 37 H 1.08999 * 109.58417 * 293.81766 * 25 12 11 38 38 H 1.09000 * 109.58213 * 173.39653 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0064 6 1 3.9601 0.7833 -0.8832 7 6 4.0007 2.7424 0.0136 8 6 5.5287 2.8238 -0.0123 9 1 5.8375 3.8691 -0.0305 10 8 6.0214 2.1606 -1.1783 11 6 6.0943 2.1453 1.2392 12 7 5.5643 0.7771 1.3158 13 6 6.3966 -0.2761 1.4362 14 8 5.9466 -1.4006 1.4979 15 6 7.8863 -0.0563 1.4941 16 16 8.7257 -1.6516 1.6562 17 6 10.4025 -1.1123 1.6986 18 1 10.6330 -0.0593 1.6309 19 6 11.4274 -2.0406 1.8189 20 7 12.6800 -1.6376 1.8511 21 14 11.0289 -3.8619 1.9353 22 1 10.9926 -4.4488 0.5716 23 1 12.0717 -4.5463 2.7412 24 1 9.7055 -4.0385 2.5855 25 6 4.1095 0.5789 1.2581 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 3.5949 3.2456 -0.8640 30 1 3.6269 3.2274 0.9154 31 1 6.9850 2.1710 -1.2591 32 1 5.7931 2.7039 2.1254 33 1 7.1820 2.1128 1.1774 34 1 8.2166 0.4373 0.5801 35 1 8.1281 0.5699 2.3528 36 1 13.3962 -2.2864 1.9356 37 1 3.6466 1.0097 2.1459 38 1 3.8878 -0.4872 1.2087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592908989.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:30 Heat of formation + Delta-G solvation = -168.193583 kcal Electronic energy + Delta-G solvation = -22959.718940 eV Core-core repulsion = 19314.821180 eV Total energy + Delta-G solvation = -3644.897760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10988 -39.94126 -38.02845 -36.76856 -35.42037 -33.27991 -32.46887 -30.73544 -29.45686 -27.98800 -25.72903 -25.45131 -24.33455 -21.99499 -20.46188 -19.50695 -18.09834 -17.72876 -17.14318 -17.03968 -16.73482 -16.57996 -15.58464 -15.38331 -14.98321 -14.74908 -14.65530 -14.15142 -13.92342 -13.62251 -13.41562 -13.15755 -13.04349 -12.81576 -12.44373 -12.20614 -12.10111 -11.60540 -11.38164 -11.31658 -11.19166 -11.07290 -11.02788 -10.75615 -10.60241 -10.37922 -9.88437 -9.53413 -9.03184 -8.67353 -8.52485 -6.95520 -6.32089 -4.04133 1.87045 2.36679 2.66888 2.86778 3.12262 3.31647 3.48850 3.54323 3.93509 4.25869 4.30746 4.33322 4.51127 4.56993 4.60295 4.75058 4.82514 4.89407 4.94343 5.04487 5.07260 5.20429 5.26462 5.28745 5.36938 5.43118 5.60585 5.66647 5.76854 5.82633 5.90064 6.08790 6.36879 7.33920 7.41108 7.45487 7.90731 8.35845 8.37418 9.14242 10.77050 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.003499 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.471964 B = 8000.194068 C = 8800.919408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.471 3.529 4 O -0.508 6.508 5 C -0.092 4.092 6 H 0.125 0.875 7 C -0.095 4.095 8 C 0.092 3.908 9 H 0.076 0.924 10 O -0.559 6.559 11 C 0.071 3.929 12 N -0.610 5.610 13 C 0.537 3.463 14 O -0.514 6.514 15 C -0.121 4.121 16 S -0.140 6.140 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.126 3.874 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.383 0.617 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.069 0.931 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.834 10.112 -3.122 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.270 6.270 3 C 0.314 3.686 4 O -0.396 6.396 5 C -0.112 4.112 6 H 0.142 0.858 7 C -0.133 4.133 8 C 0.032 3.968 9 H 0.093 0.907 10 O -0.366 6.366 11 C -0.053 4.053 12 N -0.346 5.346 13 C 0.325 3.675 14 O -0.388 6.388 15 C -0.271 4.271 16 S 0.086 5.914 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C 0.003 3.997 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.231 0.769 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.162 8.568 -3.098 23.040 hybrid contribution 1.054 0.853 0.031 1.356 sum -20.108 9.422 -3.067 22.417 Atomic orbital electron populations 1.23293 0.76243 1.03902 1.02464 1.86565 1.23491 1.33200 1.83699 1.23649 0.91705 0.81370 0.71897 1.90659 1.67129 1.36368 1.45418 1.21400 0.86826 0.99654 1.03338 0.85757 1.21449 0.93431 0.93955 1.04439 1.22177 0.94033 0.95502 0.85099 0.90659 1.86514 1.27245 1.79656 1.43169 1.22583 1.00673 0.83275 0.98776 1.47852 1.05573 1.06344 1.74810 1.20288 0.88254 0.83950 0.74999 1.90705 1.77525 1.22526 1.48006 1.23298 0.93143 1.05267 1.05411 1.84856 1.03888 1.06148 1.96487 1.22295 0.88604 0.97609 1.58422 0.89415 1.24708 0.94034 0.99358 0.93164 1.69935 0.98712 1.35270 1.47750 0.86740 0.80642 0.84691 0.79819 1.19164 1.19937 1.15908 1.21374 0.80559 1.03050 0.94757 0.87923 0.91839 0.91911 0.89893 0.89467 0.76851 0.90147 0.88394 0.88560 0.88555 0.91906 0.91244 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.83 10.49 -39.26 -0.41 -4.24 16 3 C 0.47 5.33 7.26 36.00 0.26 5.59 16 4 O -0.51 -6.56 15.73 -18.76 -0.30 -6.86 16 5 C -0.09 -0.98 2.64 -91.66 -0.24 -1.22 16 6 H 0.12 1.47 7.61 -51.93 -0.40 1.08 16 7 C -0.10 -0.86 4.21 -26.69 -0.11 -0.97 16 8 C 0.09 0.75 3.81 -26.61 -0.10 0.65 16 9 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 10 O -0.56 -5.55 12.51 -35.23 -0.44 -5.99 16 11 C 0.07 0.64 5.98 -3.71 -0.02 0.62 16 12 N -0.61 -7.79 2.91 -172.77 -0.50 -8.30 16 13 C 0.54 9.31 7.72 -10.99 -0.08 9.23 16 14 O -0.51 -10.87 15.28 5.55 0.08 -10.79 16 15 C -0.12 -2.22 4.50 36.00 0.16 -2.05 16 16 S -0.14 -3.46 18.55 -107.50 -1.99 -5.46 16 17 C -0.52 -14.61 10.04 30.94 0.31 -14.30 16 18 H 0.09 2.54 8.03 -52.49 -0.42 2.12 16 19 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 20 N -0.88 -26.11 13.97 55.49 0.78 -25.34 16 21 Si 0.86 21.47 27.74 -169.99 -4.72 16.75 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 25 C 0.13 1.47 5.64 -3.71 -0.02 1.45 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 29 H 0.08 0.78 8.07 -51.93 -0.42 0.37 16 30 H 0.09 0.71 8.13 -51.93 -0.42 0.28 16 31 H 0.38 2.76 9.08 45.56 0.41 3.18 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.86 5.93 -51.93 -0.31 0.55 16 34 H 0.10 1.59 7.69 -51.92 -0.40 1.19 16 35 H 0.10 1.64 7.94 -51.91 -0.41 1.22 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.11 1.47 7.00 -51.93 -0.36 1.10 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -35.48 332.63 -5.78 -41.27 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -4.42 Total: 0.95 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 1.12 Total: 2.99 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.27 Total: -33.64 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.06 Total: -27.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.72 Total: 16.75 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.48 -5.78 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592908989.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.926 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds