Wall clock time and date at job start Tue Mar 31 2020 03:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30180 * 126.80316 * 2 1 4 4 O 1.20916 * 111.60755 * 179.97438 * 3 2 1 5 5 C 1.34044 * 111.56513 * 359.76034 * 4 3 2 6 6 C 1.35454 * 106.44592 * 0.38203 * 5 4 3 7 7 C 1.50697 * 128.00729 * 179.90825 * 6 5 4 8 8 N 1.46497 * 109.47604 * 259.68238 * 7 6 5 9 9 S 1.65595 * 120.00400 * 165.00270 * 8 7 6 10 10 O 1.42101 * 106.39876 * 311.45775 * 9 8 7 11 11 O 1.42096 * 106.40242 * 178.53750 * 9 8 7 12 12 N 1.65600 * 107.21978 * 64.99328 * 9 8 7 13 13 C 1.46502 * 120.00173 * 270.00411 * 12 9 8 14 14 C 1.46506 * 119.99915 * 90.00190 * 12 9 8 15 15 H 1.09005 * 109.46943 * 0.02562 * 14 12 9 16 16 C 1.53000 * 109.47074 * 240.00242 * 14 12 9 17 17 C 1.50696 * 109.46871 * 119.99703 * 14 12 9 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99717 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.08999 * 109.47095 * 270.02831 * 1 2 3 26 26 H 1.09000 * 109.47028 * 30.02460 * 1 2 3 27 27 H 1.08994 * 109.47259 * 150.02722 * 1 2 3 28 28 H 1.08004 * 126.77710 * 180.28426 * 5 4 3 29 29 H 1.09000 * 109.47218 * 139.67345 * 7 6 5 30 30 H 1.09004 * 109.47186 * 19.68220 * 7 6 5 31 31 H 0.96999 * 119.99336 * 344.99455 * 8 7 6 32 32 H 1.09005 * 109.46997 * 269.99464 * 13 12 9 33 33 H 1.08997 * 109.47497 * 29.99813 * 13 12 9 34 34 H 1.09004 * 109.47127 * 150.00311 * 13 12 9 35 35 H 1.08997 * 109.46749 * 299.99711 * 16 14 12 36 36 H 1.08996 * 109.47024 * 59.99854 * 16 14 12 37 37 H 1.08998 * 109.46637 * 179.97438 * 16 14 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4538 0.7254 0.0005 5 6 3.6025 -0.6067 0.0061 6 6 2.3540 -1.1320 0.0006 7 6 1.9591 -2.5863 0.0016 8 7 1.5995 -2.9957 -1.3583 9 16 1.4842 -4.6039 -1.7357 10 8 2.6642 -5.2187 -1.2367 11 8 1.0912 -4.6688 -3.0997 12 7 0.2258 -5.2249 -0.8563 13 6 0.4676 -5.7786 0.4783 14 6 -1.1294 -5.2204 -1.4130 15 1 -1.1124 -4.7729 -2.4068 16 6 -2.0520 -4.4073 -0.5027 17 6 -1.6378 -6.6357 -1.5086 18 1 -1.0141 -7.4565 -1.1865 19 6 -2.8993 -6.8829 -2.0073 20 7 -3.3433 -8.1181 -2.0902 21 14 -3.9777 -5.4633 -2.5650 22 1 -4.7945 -4.9830 -1.4216 23 1 -3.1213 -4.3562 -3.0612 24 1 -4.8748 -5.9221 -3.6559 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 4.5340 -1.1534 0.0121 29 1 1.1043 -2.7303 0.6625 30 1 2.7959 -3.1898 0.3534 31 1 1.4289 -2.3246 -2.0376 32 1 0.6946 -6.8415 0.3949 33 1 1.3098 -5.2622 0.9388 34 1 -0.4218 -5.6443 1.0940 35 1 -2.0688 -4.8551 0.4908 36 1 -1.6841 -3.3836 -0.4337 37 1 -3.0601 -4.4036 -0.9172 38 1 -4.2309 -8.2918 -2.4407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601427154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:04 Heat of formation + Delta-G solvation = -4.840116 kcal Electronic energy + Delta-G solvation = -23767.671287 eV Core-core repulsion = 20162.149816 eV Total energy + Delta-G solvation = -3605.521471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.19822 -36.95605 -36.61501 -36.35626 -35.40552 -34.09866 -32.54346 -31.86117 -30.10150 -28.93367 -26.58937 -25.86082 -25.05242 -21.94419 -21.59593 -20.99647 -19.01390 -17.89510 -17.83413 -17.40582 -17.15173 -16.50149 -16.01865 -15.40962 -15.05559 -14.53758 -14.02331 -13.67477 -13.57398 -13.42666 -13.29635 -12.99592 -12.87843 -12.68634 -12.35396 -12.23800 -12.00257 -11.78805 -11.67637 -11.55416 -11.34671 -11.24264 -11.12789 -10.53122 -10.20900 -10.13970 -9.81681 -9.69990 -9.53197 -9.44967 -8.67387 -8.19463 -6.15986 -4.16780 0.89833 1.27124 1.91457 2.97801 3.18331 3.29826 3.33241 3.35451 3.88368 3.95914 4.25916 4.31009 4.53189 4.71704 4.82840 5.11957 5.14253 5.19524 5.29025 5.37553 5.43798 5.51370 5.58205 5.76616 5.88832 5.94371 6.12403 6.17473 6.25642 6.41714 6.51261 6.73800 6.91405 7.23027 7.34616 7.58393 8.00549 8.43118 8.88429 9.43621 10.97002 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.020422 B = 0.004831 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.724887 B = 5794.849099 C = 6547.471288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.032 3.968 3 N -0.368 5.368 4 O 0.096 5.904 5 C -0.038 4.038 6 C -0.211 4.211 7 C 0.199 3.801 8 N -1.132 6.132 9 S 2.782 3.218 10 O -0.988 6.988 11 O -0.971 6.971 12 N -0.983 5.983 13 C 0.107 3.893 14 C 0.240 3.760 15 H 0.057 0.943 16 C -0.163 4.163 17 C -0.523 4.523 18 H 0.082 0.918 19 C 0.074 3.926 20 N -0.893 5.893 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.264 1.264 24 H -0.294 1.294 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.220 0.780 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.414 0.586 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.032 0.968 37 H 0.049 0.951 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.952 14.969 7.167 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 N -0.074 5.074 4 O 0.033 5.967 5 C -0.121 4.121 6 C -0.216 4.216 7 C 0.073 3.927 8 N -0.891 5.891 9 S 2.790 3.210 10 O -0.972 6.972 11 O -0.955 6.955 12 N -0.825 5.825 13 C -0.039 4.039 14 C 0.135 3.865 15 H 0.075 0.925 16 C -0.221 4.221 17 C -0.562 4.562 18 H 0.100 0.900 19 C -0.129 4.129 20 N -0.531 5.531 21 Si 0.712 3.288 22 H -0.204 1.204 23 H -0.189 1.189 24 H -0.221 1.221 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.237 0.763 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.246 0.754 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.205 15.537 6.654 19.744 hybrid contribution -1.099 0.249 -0.286 1.163 sum 9.106 15.786 6.367 19.304 Atomic orbital electron populations 1.20254 0.85675 1.04299 1.03729 1.23591 0.99186 0.88181 1.01846 1.73872 0.89400 1.24145 1.20028 1.84836 1.21630 1.22953 1.67268 1.25963 1.00868 0.83600 1.01628 1.21266 0.92569 0.97250 1.10565 1.19334 1.00916 0.88534 0.83940 1.56365 1.87017 1.27720 1.18013 1.01946 0.73216 0.72527 0.73315 1.93555 1.47044 1.74821 1.81735 1.93623 1.83287 1.85675 1.32866 1.57435 1.22995 1.73258 1.28834 1.21232 1.00478 0.99009 0.83211 1.19088 0.77111 0.97790 0.92505 0.92523 1.22497 0.99815 0.97939 1.01886 1.21150 1.00954 0.90880 1.43239 0.89975 1.24909 0.97587 0.95515 0.94868 1.69873 1.18631 1.18911 1.45673 0.86958 0.80818 0.82976 0.78095 1.20406 1.18940 1.22085 0.89883 0.90426 0.89420 0.76348 0.90170 0.89126 0.75351 0.92607 0.93113 0.90803 0.92108 0.94889 0.93232 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.39 36.01 0.37 -0.36 16 2 C 0.03 0.34 7.33 -82.10 -0.60 -0.26 16 3 N -0.37 -4.36 12.07 33.42 0.40 -3.95 16 4 O 0.10 0.99 11.20 17.17 0.19 1.18 16 5 C -0.04 -0.31 12.26 29.74 0.36 0.06 16 6 C -0.21 -2.03 5.72 -104.42 -0.60 -2.63 16 7 C 0.20 1.98 6.73 -5.20 -0.03 1.95 16 8 N -1.13 -13.99 6.05 -11.66 -0.07 -14.07 16 9 S 2.78 48.24 6.09 -107.50 -0.66 47.58 16 10 O -0.99 -18.36 16.68 -57.17 -0.95 -19.32 16 11 O -0.97 -20.72 16.70 -57.17 -0.95 -21.68 16 12 N -0.98 -18.11 3.12 -115.84 -0.36 -18.47 16 13 C 0.11 1.68 9.53 59.85 0.57 2.25 16 14 C 0.24 5.25 2.21 -69.08 -0.15 5.10 16 15 H 0.06 1.32 5.97 -51.93 -0.31 1.01 16 16 C -0.16 -3.07 8.65 37.16 0.32 -2.74 16 17 C -0.52 -13.96 8.95 -34.44 -0.31 -14.27 16 18 H 0.08 2.39 7.89 -52.49 -0.41 1.97 16 19 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 20 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 21 Si 0.88 20.87 24.37 -169.99 -4.14 16.72 16 22 H -0.28 -6.23 6.87 56.52 0.39 -5.84 16 23 H -0.26 -5.97 6.53 56.52 0.37 -5.60 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.22 0.93 8.06 -52.48 -0.42 0.51 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.82 7.75 -51.93 -0.40 0.42 16 31 H 0.41 4.67 8.64 -34.47 -0.30 4.37 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.62 7.79 -51.93 -0.40 0.21 16 34 H 0.07 1.09 6.43 -51.93 -0.33 0.76 16 35 H 0.06 1.08 6.66 -51.93 -0.35 0.74 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 1.01 3.28 -51.93 -0.17 0.84 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -34.39 327.61 -5.81 -40.21 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.82 Total: 1.48 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.16 Total: -8.96 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.75 Total: -62.16 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.72 Total: -39.81 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.14 Total: 16.72 kcal Atomic # 16 Polarization: 48.24 SS G_CDS: -0.66 Total: 47.58 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.39 -5.81 -40.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601427154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.367 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds