Wall clock time and date at job start Tue Mar 31 2020 04:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.37098 * 119.99390 * 2 1 4 4 H 1.08000 * 119.99483 * 204.31205 * 3 2 1 5 5 C 1.38947 * 120.00306 * 24.31664 * 3 2 1 6 6 N 1.31410 * 120.00183 * 12.95707 * 5 3 2 7 7 Si 1.86802 * 120.00244 * 192.95273 * 5 3 2 8 8 H 1.48499 * 109.46861 * 59.99734 * 7 5 3 9 9 H 1.48491 * 109.47255 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46791 * 300.00188 * 7 5 3 11 11 C 1.34770 * 120.00277 * 180.27412 * 2 1 3 12 12 O 1.21294 * 120.00310 * 180.02562 * 11 2 1 13 13 C 1.50704 * 120.00146 * 0.02562 * 11 2 1 14 14 N 1.46497 * 109.47408 * 180.02562 * 13 11 2 15 15 N 1.40280 * 126.57093 * 269.68800 * 14 13 11 16 16 C 1.30156 * 107.74290 * 179.88204 * 15 14 13 17 17 C 1.47901 * 125.45821 * 180.13748 * 16 15 14 18 18 C 1.39533 * 120.14346 * 0.02674 * 17 16 15 19 19 C 1.37968 * 119.85759 * 179.74681 * 18 17 16 20 20 C 1.38352 * 120.14004 * 0.53730 * 19 18 17 21 21 C 1.38350 * 120.28524 * 359.73917 * 20 19 18 22 22 C 1.37973 * 120.13940 * 359.97438 * 21 20 19 23 23 O 1.35089 * 109.07515 * 0.37942 * 16 15 14 24 24 C 1.34315 * 108.86116 * 359.75590 * 23 16 15 25 25 O 1.21692 * 126.26540 * 179.97438 * 24 23 16 26 26 H 1.08997 * 109.47075 * 265.80832 * 1 2 3 27 27 H 1.08995 * 109.47137 * 25.80958 * 1 2 3 28 28 H 1.09007 * 109.46732 * 145.80911 * 1 2 3 29 29 H 0.96996 * 120.00532 * 179.97438 * 6 5 3 30 30 H 1.09000 * 109.46811 * 300.00402 * 13 11 2 31 31 H 1.09002 * 109.46821 * 59.99823 * 13 11 2 32 32 H 1.08004 * 120.07251 * 0.02921 * 18 17 16 33 33 H 1.08006 * 119.93346 * 180.25796 * 19 18 17 34 34 H 1.08003 * 119.85460 * 179.76598 * 20 19 18 35 35 H 1.07998 * 119.92785 * 179.97438 * 21 20 19 36 36 H 1.07998 * 120.06887 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1586 1.2289 -0.3851 5 6 1.5481 2.3373 0.4955 6 7 0.4364 2.2494 1.1907 7 14 2.3186 4.0083 0.1735 8 1 2.3936 4.2449 -1.2906 9 1 1.4889 5.0658 0.8045 10 1 3.6863 4.0422 0.7511 11 6 2.1390 -1.1671 -0.0056 12 8 3.3519 -1.1671 -0.0051 13 6 1.3856 -2.4723 -0.0124 14 7 2.3376 -3.5857 -0.0170 15 7 2.8769 -4.2196 -1.1462 16 6 3.6809 -5.1548 -0.7300 17 6 4.4612 -6.0640 -1.5972 18 6 4.3698 -5.9582 -2.9855 19 6 5.1044 -6.8059 -3.7888 20 6 5.9219 -7.7666 -3.2205 21 6 6.0125 -7.8805 -1.8447 22 6 5.2876 -7.0349 -1.0303 23 8 3.6840 -5.1653 0.6208 24 6 2.8595 -4.2023 1.0645 25 8 2.6255 -3.9349 2.2284 26 1 -0.3633 -0.0751 1.0249 27 1 -0.3633 0.9251 -0.4474 28 1 -0.3633 -0.8501 -0.5775 29 1 0.0161 3.0521 1.5369 30 1 0.7585 -2.5344 0.8770 31 1 0.7593 -2.5255 -0.9029 32 1 3.7289 -5.2113 -3.4303 33 1 5.0378 -6.7223 -4.8635 34 1 6.4920 -8.4303 -3.8537 35 1 6.6521 -8.6328 -1.4073 36 1 5.3595 -7.1245 0.0435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608777506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:11 Heat of formation + Delta-G solvation = 9.516770 kcal Electronic energy + Delta-G solvation = -23773.612347 eV Core-core repulsion = 20033.269486 eV Total energy + Delta-G solvation = -3740.342861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.17225 -39.40219 -38.63637 -37.58489 -35.93519 -34.68417 -32.97298 -31.81374 -31.34356 -30.64297 -27.90183 -26.24066 -24.73144 -24.07009 -23.25044 -22.14182 -21.60119 -19.47961 -18.01076 -17.58282 -16.95607 -16.91031 -16.27054 -16.16358 -16.00559 -15.18287 -14.97823 -14.74008 -14.27939 -14.17032 -13.83084 -13.75167 -13.59670 -12.81461 -12.61063 -12.40008 -12.09686 -11.85404 -11.73620 -11.53496 -11.39305 -11.35294 -11.33413 -10.90646 -10.65391 -10.44267 -10.33037 -9.80088 -9.30428 -9.07381 -8.78760 -8.22074 -7.76287 -6.39246 -3.95856 0.42224 1.06151 1.76771 2.02029 2.50342 2.57741 3.15421 3.22148 3.26114 3.49729 3.70555 4.06016 4.15387 4.59201 4.63402 4.71463 4.74145 4.88453 5.04636 5.07147 5.17708 5.38383 5.47709 5.51687 5.58518 5.66376 5.74860 6.00824 6.08171 6.12456 6.15837 6.23080 6.53979 6.73824 7.09857 7.50950 7.55222 7.75110 8.03561 8.38943 9.08903 9.29839 9.83149 10.65577 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.024548 B = 0.003228 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.368241 B = 8671.284874 C = 9168.899503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.437 5.437 3 C -0.308 4.308 4 H 0.098 0.902 5 C 0.033 3.967 6 N -0.879 5.879 7 Si 0.929 3.071 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.427 3.573 12 O -0.577 6.577 13 C 0.143 3.857 14 N -0.425 5.425 15 N -0.238 5.238 16 C 0.269 3.731 17 C -0.023 4.023 18 C -0.068 4.068 19 C -0.121 4.121 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.079 4.079 23 O -0.270 6.270 24 C 0.613 3.387 25 O -0.480 6.480 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.027 0.973 29 H 0.270 0.730 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 -18.509 -9.438 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.156 5.156 3 C -0.436 4.436 4 H 0.116 0.884 5 C -0.171 4.171 6 N -0.518 5.518 7 Si 0.756 3.244 8 H -0.198 1.198 9 H -0.208 1.208 10 H -0.197 1.197 11 C 0.213 3.787 12 O -0.461 6.461 13 C 0.020 3.980 14 N -0.255 5.255 15 N -0.067 5.067 16 C 0.046 3.954 17 C -0.025 4.025 18 C -0.087 4.087 19 C -0.139 4.139 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.099 4.099 23 O -0.167 6.167 24 C 0.365 3.635 25 O -0.361 6.361 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.319 -17.769 -9.172 20.270 hybrid contribution 0.355 0.808 0.691 1.120 sum 3.674 -16.961 -8.481 19.316 Atomic orbital electron populations 1.21600 0.80949 1.00356 1.00988 1.43521 1.05552 1.04383 1.62186 1.19606 1.00749 0.83745 1.39507 0.88390 1.25369 0.96599 1.00250 0.94873 1.69972 1.19203 1.29987 1.32598 0.85950 0.79111 0.80630 0.78749 1.19798 1.20834 1.19719 1.20119 0.88510 0.84749 0.85344 1.90560 1.13594 1.86540 1.55411 1.21538 0.88364 0.82458 1.05616 1.49396 1.42579 1.31868 1.01626 1.77340 1.11446 1.06814 1.11113 1.23699 0.96771 0.95834 0.79135 1.17298 0.98651 0.95490 0.91040 1.21238 0.98010 0.98469 0.91027 1.21120 0.96921 0.95619 1.00279 1.21408 0.97520 0.97570 0.95159 1.21099 0.99781 0.99563 0.93593 1.21299 0.94294 0.93304 1.00984 1.85110 1.58722 1.51184 1.21685 1.19129 0.79042 0.78764 0.86586 1.91201 1.63624 1.66827 1.14436 0.92482 0.90186 0.95479 0.91990 0.86365 0.86737 0.84175 0.84876 0.85385 0.85037 0.84646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.24 8.45 59.85 0.51 2.74 16 2 N -0.44 -11.19 3.01 -122.19 -0.37 -11.56 16 3 C -0.31 -8.65 9.24 -14.93 -0.14 -8.79 16 4 H 0.10 2.89 7.45 -52.49 -0.39 2.50 16 5 C 0.03 0.87 5.04 -17.47 -0.09 0.78 16 6 N -0.88 -23.30 10.85 55.50 0.60 -22.70 16 7 Si 0.93 20.78 29.57 -169.99 -5.03 15.76 16 8 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 C 0.43 10.66 7.70 -10.99 -0.08 10.57 16 12 O -0.58 -16.79 16.14 5.55 0.09 -16.70 16 13 C 0.14 2.75 5.49 -5.19 -0.03 2.72 16 14 N -0.42 -8.38 3.13 -66.46 -0.21 -8.59 16 15 N -0.24 -4.18 12.16 31.97 0.39 -3.79 16 16 C 0.27 4.22 7.94 -14.31 -0.11 4.10 16 17 C -0.02 -0.27 5.87 -104.97 -0.62 -0.89 16 18 C -0.07 -0.68 9.68 -39.20 -0.38 -1.06 16 19 C -0.12 -0.92 10.03 -39.64 -0.40 -1.31 16 20 C -0.10 -0.65 10.04 -39.50 -0.40 -1.05 16 21 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 22 C -0.08 -0.77 9.71 -39.20 -0.38 -1.15 16 23 O -0.27 -4.77 10.43 -20.73 -0.22 -4.99 16 24 C 0.61 12.68 9.24 54.15 0.50 13.18 16 25 O -0.48 -11.15 17.91 -19.00 -0.34 -11.50 16 26 H 0.06 1.25 7.83 -51.93 -0.41 0.85 16 27 H 0.08 1.80 6.80 -51.93 -0.35 1.45 16 28 H 0.03 0.45 6.60 -51.93 -0.34 0.11 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.12 2.08 8.08 -51.93 -0.42 1.66 16 31 H 0.11 1.78 7.41 -51.93 -0.38 1.40 16 32 H 0.14 1.39 7.82 -52.48 -0.41 0.98 16 33 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 34 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.14 1.23 7.89 -52.49 -0.41 0.82 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -35.20 325.35 -5.72 -40.92 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -3.53 Total: -0.31 kcal Atomic # 6 Polarization: 20.57 SS G_CDS: -2.01 Total: 18.56 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.41 Total: -46.64 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.47 Total: -33.18 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.20 -5.72 -40.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608777506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.437 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds