Wall clock time and date at job start Tue Mar 31 2020 03:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21566 * 119.99800 * 179.86389 * 13 12 11 15 15 C 1.47747 * 119.99857 * 359.86377 * 13 12 11 16 16 C 1.41114 * 126.30252 * 179.97438 * 15 13 12 17 17 C 1.36998 * 105.42462 * 179.97438 * 16 15 13 18 18 C 1.47333 * 126.63610 * 180.02562 * 17 16 15 19 19 C 1.36152 * 125.94776 * 180.02562 * 18 17 16 20 20 C 1.40872 * 106.72626 * 180.02562 * 19 18 17 21 21 C 1.34763 * 107.06143 * 359.97438 * 20 19 18 22 22 O 1.34336 * 108.70252 * 359.74086 * 21 20 19 23 23 N 1.36549 * 106.72934 * 0.02562 * 17 16 15 24 24 H 0.97000 * 125.03183 * 180.02562 * 23 17 16 25 25 N 1.28459 * 109.94369 * 359.75979 * 23 17 16 26 26 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 27 27 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 28 28 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 29 29 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 30 30 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 31 31 H 1.08010 * 127.28543 * 359.96951 * 16 15 13 32 32 H 1.07997 * 126.63703 * 0.02820 * 19 18 17 33 33 H 1.08002 * 126.46865 * 180.02562 * 20 19 18 34 34 H 1.07995 * 125.65200 * 180.02562 * 21 20 19 35 35 H 1.09004 * 113.77444 * 221.15143 * 26 12 11 36 36 H 1.09004 * 113.87147 * 89.76886 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3861 -6.4951 0.9224 15 6 -0.2010 -5.7124 2.4473 16 6 -0.6681 -6.9450 2.9512 17 6 -1.6246 -6.6212 3.8770 18 6 -2.4162 -7.5618 4.6891 19 6 -3.3646 -7.2241 5.6057 20 6 -3.8606 -8.4300 6.1389 21 6 -3.1995 -9.4335 5.5290 22 8 -2.3320 -8.9059 4.6494 23 7 -1.7023 -5.2582 3.9017 24 1 -2.2992 -4.7446 4.4682 25 7 -0.8640 -4.7563 3.0677 26 6 2.1610 -3.7398 0.0582 27 1 -0.4850 0.8400 0.0004 28 1 -0.3471 -1.8018 -1.0246 29 1 1.3268 -2.4870 2.2200 30 1 -0.3218 -2.8255 1.5318 31 1 -0.3408 -7.9343 2.6670 32 1 -3.6764 -6.2251 5.8724 33 1 -4.6267 -8.5312 6.8934 34 1 -3.3463 -10.4875 5.7131 35 1 2.2032 -4.2939 -0.8796 36 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618914747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:11 Heat of formation + Delta-G solvation = 49.884282 kcal Electronic energy + Delta-G solvation = -23682.349969 eV Core-core repulsion = 19943.757575 eV Total energy + Delta-G solvation = -3738.592394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.00235 -42.30420 -39.25126 -37.17676 -33.89391 -33.51274 -32.26418 -32.17002 -31.80641 -28.92069 -28.15360 -25.58488 -25.15765 -23.41852 -22.68529 -21.92219 -20.78173 -19.77637 -19.00047 -18.06834 -17.37811 -16.91398 -16.49072 -16.15981 -15.52783 -15.41787 -14.92619 -14.70662 -14.34533 -14.05340 -13.83468 -13.25439 -13.13392 -13.02994 -12.66335 -12.52506 -12.23358 -11.93944 -11.51872 -11.12715 -11.05953 -10.77698 -10.47868 -10.46049 -10.22484 -10.01880 -9.78146 -9.37198 -9.24196 -8.72903 -8.35123 -8.23506 -7.78387 -6.34709 -4.44479 0.79973 1.84570 2.05030 2.12479 2.66596 3.06735 3.16212 3.25621 3.29579 3.55102 3.85842 4.19962 4.23446 4.52596 4.58483 4.65560 4.89339 5.08814 5.26715 5.42840 5.47905 5.62548 5.70450 5.71469 6.05584 6.09009 6.19888 6.30259 6.44978 6.63416 6.65692 6.72792 6.82225 6.92210 7.16755 7.67494 7.81675 7.87502 8.46349 8.58572 8.77434 9.26196 9.48066 10.72084 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.003125 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.032309 B = 8958.339931 C = 9652.561656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.235 3.765 10 O -0.572 6.572 11 C 0.090 3.910 12 N -0.617 5.617 13 C 0.610 3.390 14 O -0.556 6.556 15 C 0.006 3.994 16 C -0.142 4.142 17 C 0.063 3.937 18 C 0.064 3.936 19 C -0.199 4.199 20 C -0.209 4.209 21 C -0.031 4.031 22 O -0.160 6.160 23 N -0.370 5.370 24 H 0.447 0.553 25 N -0.220 5.220 26 C 0.114 3.886 27 H 0.271 0.729 28 H 0.391 0.609 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.168 0.832 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.209 0.791 35 H 0.073 0.927 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 -11.411 12.701 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.193 3.807 10 O -0.384 6.384 11 C -0.032 4.032 12 N -0.349 5.349 13 C 0.397 3.603 14 O -0.434 6.434 15 C -0.154 4.154 16 C -0.170 4.170 17 C -0.061 4.061 18 C 0.012 3.988 19 C -0.220 4.220 20 C -0.228 4.228 21 C -0.099 4.099 22 O -0.054 6.054 23 N -0.087 5.087 24 H 0.292 0.708 25 N -0.056 5.056 26 C -0.008 4.008 27 H 0.082 0.918 28 H 0.246 0.754 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.186 0.814 32 H 0.168 0.832 33 H 0.171 0.829 34 H 0.225 0.775 35 H 0.091 0.909 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.464 -11.561 12.173 18.373 hybrid contribution -0.494 0.872 0.838 1.307 sum -7.958 -10.688 13.011 18.625 Atomic orbital electron populations 1.69424 1.06123 1.27925 1.50205 1.25064 0.95018 0.99807 0.93209 0.86301 0.80123 0.82431 0.77769 1.19459 1.20704 1.20772 1.21524 0.93929 0.89910 1.51921 0.91005 1.19900 0.85716 0.91111 0.83946 1.86059 1.47066 1.49715 1.55539 1.24329 1.00774 0.76408 1.01726 1.50091 1.39425 1.04758 1.40645 1.16464 0.81100 0.82399 0.80315 1.90734 1.56092 1.39450 1.57156 1.21997 1.01527 0.90144 1.01730 1.21848 0.97722 0.99685 0.97723 1.18190 1.01869 0.83771 1.02307 1.18855 0.99404 0.80849 0.99667 1.21766 0.99785 1.00228 1.00177 1.21726 1.04461 0.91818 1.04753 1.24223 0.92975 0.99753 0.92949 1.84107 1.51546 1.18714 1.51067 1.43525 1.30417 1.03401 1.31358 0.70781 1.73833 1.03005 1.25315 1.03437 1.23504 0.93273 0.92831 0.91165 0.91845 0.75422 0.90213 0.90500 0.81406 0.83236 0.82920 0.77468 0.90900 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.81 11.21 55.43 0.62 -22.19 16 2 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 3 Si 0.91 19.53 29.54 -169.99 -5.02 14.51 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.53 -13.47 8.61 -34.44 -0.30 -13.77 16 8 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.23 5.72 1.40 -90.85 -0.13 5.59 16 10 O -0.57 -14.92 13.49 -35.23 -0.48 -15.40 16 11 C 0.09 2.02 7.30 -2.84 -0.02 2.00 16 12 N -0.62 -13.75 3.61 -179.27 -0.65 -14.40 16 13 C 0.61 13.42 8.06 -12.37 -0.10 13.32 16 14 O -0.56 -13.27 17.64 5.31 0.09 -13.17 16 15 C 0.01 0.11 7.06 -82.88 -0.59 -0.47 16 16 C -0.14 -2.27 10.76 -38.94 -0.42 -2.69 16 17 C 0.06 0.84 7.10 -82.52 -0.59 0.25 16 18 C 0.06 0.74 7.17 -36.63 -0.26 0.48 16 19 C -0.20 -1.82 10.85 -39.34 -0.43 -2.24 16 20 C -0.21 -1.61 10.88 -39.82 -0.43 -2.04 16 21 C -0.03 -0.24 12.08 29.50 0.36 0.12 16 22 O -0.16 -1.79 10.68 4.44 0.05 -1.74 16 23 N -0.37 -4.77 6.90 33.25 0.23 -4.54 16 24 H 0.45 3.95 8.96 -190.45 -1.71 2.24 16 25 N -0.22 -3.75 10.60 33.36 0.35 -3.39 16 26 C 0.11 2.53 8.23 -2.97 -0.02 2.51 16 27 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 28 H 0.39 10.27 6.61 45.56 0.30 10.57 16 29 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 30 H 0.08 1.77 7.51 -51.92 -0.39 1.38 16 31 H 0.17 2.51 8.06 -52.48 -0.42 2.09 16 32 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.21 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -31.16 325.64 -7.21 -38.37 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -4.30 Total: 12.30 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -3.02 Total: 4.76 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.56 Total: -44.52 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.33 Total: -30.31 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.16 -7.21 -38.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618914747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.251 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds