Wall clock time and date at job start Tue Mar 31 2020 04:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46991 * 2 1 4 4 N 1.46506 * 109.46722 * 119.99406 * 2 1 3 5 5 C 1.34774 * 120.00126 * 275.00090 * 4 2 1 6 6 O 1.21614 * 119.99685 * 0.02562 * 5 4 2 7 7 C 1.47385 * 120.00152 * 180.02562 * 5 4 2 8 8 N 1.31571 * 126.82280 * 0.02722 * 7 5 4 9 9 N 1.28387 * 111.96934 * 179.97438 * 8 7 5 10 10 H 0.96996 * 124.37597 * 180.02562 * 9 8 7 11 11 C 1.37051 * 111.25378 * 359.97438 * 9 8 7 12 12 C 1.39124 * 134.72664 * 179.97438 * 11 9 8 13 13 C 1.36683 * 119.78380 * 180.02562 * 12 11 9 14 14 C 1.38899 * 120.89758 * 0.02562 * 13 12 11 15 15 C 1.36716 * 120.52066 * 359.97438 * 14 13 12 16 16 C 1.39195 * 119.51377 * 359.72570 * 15 14 13 17 17 C 1.50695 * 109.47426 * 239.99253 * 2 1 3 18 18 O 1.21207 * 120.00557 * 239.99928 * 17 2 1 19 19 O 1.34313 * 119.99849 * 60.00686 * 17 2 1 20 20 C 1.34924 * 117.00023 * 179.97438 * 19 17 2 21 21 H 1.07999 * 119.99969 * 359.97438 * 20 19 17 22 22 C 1.38754 * 119.99738 * 179.97438 * 20 19 17 23 23 N 1.31442 * 120.00467 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99846 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47118 * 90.00082 * 24 22 20 26 26 H 1.48499 * 109.47293 * 210.00086 * 24 22 20 27 27 H 1.48504 * 109.47104 * 330.00331 * 24 22 20 28 28 H 1.08993 * 109.47872 * 300.00729 * 1 2 3 29 29 H 1.09008 * 109.46766 * 60.00685 * 1 2 3 30 30 H 1.09001 * 109.46991 * 180.02562 * 1 2 3 31 31 H 0.97000 * 119.99894 * 95.00978 * 4 2 1 32 32 H 1.07993 * 120.10660 * 0.02823 * 12 11 9 33 33 H 1.08000 * 119.55153 * 180.02562 * 13 12 11 34 34 H 1.08000 * 119.73942 * 179.97438 * 14 13 12 35 35 H 1.08003 * 120.24402 * 180.02562 * 15 14 13 36 36 H 0.96996 * 119.99975 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8572 1.1618 2.4118 7 6 2.6386 -0.7126 3.5606 8 7 2.9889 -1.9774 3.6532 9 7 3.3762 -2.2830 4.8386 10 1 3.6742 -3.1662 5.1067 11 6 3.3153 -1.1997 5.6758 12 6 3.6083 -0.9822 7.0183 13 6 3.4291 0.2600 7.5598 14 6 2.9563 1.3133 6.7875 15 6 2.6606 1.1270 5.4658 16 6 2.8419 -0.1285 4.8929 17 6 2.0323 -0.7105 -1.2303 18 8 2.7292 -1.6960 -1.1191 19 8 1.7080 -0.2517 -2.4503 20 6 2.1909 -0.9338 -3.5095 21 1 2.8086 -1.8060 -3.3542 22 6 1.8939 -0.5145 -4.7985 23 7 1.1426 0.5473 -4.9876 24 14 2.5631 -1.4583 -6.2650 25 1 1.5981 -2.5181 -6.6539 26 1 2.7612 -0.5270 -7.4046 27 1 3.8619 -2.0804 -5.9026 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 2.2490 -1.6317 1.1528 32 1 3.9762 -1.7921 7.6306 33 1 3.6582 0.4247 8.6023 34 1 2.8213 2.2870 7.2347 35 1 2.2937 1.9493 4.8694 36 1 0.9354 0.8405 -5.8886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728367135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:26 Heat of formation + Delta-G solvation = -25.867050 kcal Electronic energy + Delta-G solvation = -23421.433137 eV Core-core repulsion = 19679.555918 eV Total energy + Delta-G solvation = -3741.877219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.65964 -39.74811 -38.67272 -37.97529 -35.65635 -34.35653 -32.81721 -32.20879 -30.82940 -30.43693 -29.58089 -25.67727 -24.83486 -23.64432 -23.05996 -22.50721 -20.24924 -19.87123 -18.49065 -17.85829 -17.72567 -16.99303 -16.03749 -15.92087 -15.74989 -15.49489 -14.89332 -14.65814 -14.35173 -14.32684 -14.18998 -13.94651 -13.49048 -12.78517 -12.45260 -12.28724 -12.23557 -11.80195 -11.64942 -11.46309 -11.26490 -11.14461 -11.07983 -10.48328 -10.43682 -10.35710 -10.06970 -9.84324 -9.19898 -9.02897 -8.88230 -8.61619 -8.32569 -6.44692 -4.13007 0.61423 1.11947 1.75699 2.45195 3.03366 3.07712 3.19282 3.25160 3.25626 3.44057 3.61345 3.93617 4.17495 4.25974 4.49251 4.58326 4.72937 4.94024 5.08379 5.15269 5.27888 5.41661 5.55090 5.61404 5.72241 5.94922 5.97773 6.14951 6.20858 6.27738 6.45250 6.52723 6.55624 6.74731 6.80658 7.35319 7.48270 7.77471 7.89736 8.28779 8.61024 9.03452 9.76500 10.72683 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.035601 B = 0.002794 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.314785 B =10018.435450 C =10510.405600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.117 0.883 4 N -0.694 5.694 5 C 0.608 3.392 6 O -0.531 6.531 7 C 0.011 3.989 8 N -0.201 5.201 9 N -0.415 5.415 10 H 0.447 0.553 11 C 0.063 3.937 12 C -0.122 4.122 13 C -0.084 4.084 14 C -0.143 4.143 15 C -0.040 4.040 16 C -0.108 4.108 17 C 0.392 3.608 18 O -0.553 6.553 19 O -0.203 6.203 20 C -0.384 4.384 21 H 0.097 0.903 22 C 0.044 3.956 23 N -0.861 5.861 24 Si 0.944 3.056 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.267 1.267 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.415 0.585 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 -2.063 23.250 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 H 0.134 0.866 4 N -0.347 5.347 5 C 0.392 3.608 6 O -0.406 6.406 7 C -0.160 4.160 8 N -0.030 5.030 9 N -0.134 5.134 10 H 0.292 0.708 11 C -0.050 4.050 12 C -0.143 4.143 13 C -0.105 4.105 14 C -0.162 4.162 15 C -0.061 4.061 16 C -0.115 4.115 17 C 0.238 3.762 18 O -0.451 6.451 19 O -0.109 6.109 20 C -0.460 4.460 21 H 0.114 0.886 22 C -0.161 4.161 23 N -0.497 5.497 24 Si 0.769 3.231 25 H -0.198 1.198 26 H -0.203 1.203 27 H -0.191 1.191 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.253 0.747 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.324 -2.295 22.415 22.651 hybrid contribution 0.643 -0.872 -0.131 1.091 sum 2.967 -3.168 22.284 22.703 Atomic orbital electron populations 1.22071 0.92514 1.02886 1.03720 1.20179 0.95686 0.97325 0.81300 0.86572 1.45656 1.65756 1.15225 1.08083 1.16540 0.77660 0.85612 0.81023 1.90796 1.50769 1.14572 1.84440 1.22748 1.08643 0.89931 0.94719 1.72987 1.10056 1.16726 1.03261 1.43051 1.53935 1.11753 1.04702 0.70773 1.19231 1.03641 0.88164 0.93989 1.19761 1.05089 0.98618 0.90835 1.20745 0.97757 0.91986 0.99989 1.20858 1.01922 0.99562 0.93852 1.20458 0.95708 0.95243 0.94647 1.19422 1.05431 0.94955 0.91720 1.22965 0.82009 0.85003 0.86206 1.90554 1.39493 1.27844 1.87217 1.83858 1.63136 1.51528 1.12394 1.21248 1.31872 1.11146 0.81714 0.88559 1.25349 0.96295 0.96498 0.97954 1.69990 1.34326 1.22623 1.22794 0.85660 0.79379 0.78735 0.79336 1.19836 1.20271 1.19096 0.91484 0.89526 0.92189 0.74734 0.85461 0.85168 0.85203 0.84148 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.42 37.16 0.35 -2.30 16 2 C 0.16 3.15 3.09 -69.08 -0.21 2.94 16 3 H 0.12 2.27 7.58 -51.93 -0.39 1.88 16 4 N -0.69 -12.34 4.95 -56.02 -0.28 -12.62 16 5 C 0.61 10.43 7.78 -12.54 -0.10 10.33 16 6 O -0.53 -9.94 16.06 5.27 0.08 -9.85 16 7 C 0.01 0.17 7.32 -80.76 -0.59 -0.42 16 8 N -0.20 -2.71 11.80 34.46 0.41 -2.31 16 9 N -0.42 -4.20 6.85 32.34 0.22 -3.97 16 10 H 0.45 2.72 8.96 -190.49 -1.71 1.01 16 11 C 0.06 0.67 7.38 -84.21 -0.62 0.05 16 12 C -0.12 -0.96 10.03 -39.81 -0.40 -1.36 16 13 C -0.08 -0.62 9.96 -39.90 -0.40 -1.02 16 14 C -0.14 -1.24 9.98 -39.89 -0.40 -1.64 16 15 C -0.04 -0.47 9.87 -39.78 -0.39 -0.86 16 16 C -0.11 -1.44 6.34 -105.05 -0.67 -2.10 16 17 C 0.39 9.61 7.27 36.00 0.26 9.87 16 18 O -0.55 -14.50 15.07 -19.05 -0.29 -14.79 16 19 O -0.20 -5.73 9.65 -20.72 -0.20 -5.93 16 20 C -0.38 -11.22 9.65 30.92 0.30 -10.92 16 21 H 0.10 2.83 6.86 -52.49 -0.36 2.47 16 22 C 0.04 1.22 5.49 -17.53 -0.10 1.12 16 23 N -0.86 -24.94 13.67 55.48 0.76 -24.18 16 24 Si 0.94 21.13 29.55 -169.99 -5.02 16.10 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.56 8.11 -51.92 -0.42 1.13 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.41 7.35 7.52 -40.82 -0.31 7.04 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 1.68 7.65 -52.48 -0.40 1.27 16 36 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -34.71 327.95 -7.18 -41.89 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.84 Total: 7.03 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -2.96 Total: 3.69 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 1.11 Total: -43.08 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.40 Total: -30.57 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.71 -7.18 -41.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728367135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.022 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds