Wall clock time and date at job start Tue Mar 31 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40585 * 120.13304 * 2 1 4 4 C 1.34838 * 120.34473 * 180.02562 * 3 2 1 5 5 N 1.36687 * 120.64392 * 359.97083 * 4 3 2 6 6 C 1.36158 * 132.28284 * 180.02562 * 5 4 3 7 7 C 1.36644 * 107.08839 * 179.71785 * 6 5 4 8 8 C 1.47450 * 125.92739 * 180.26583 * 7 6 5 9 9 O 1.21516 * 120.00339 * 0.02562 * 8 7 6 10 10 O 1.34760 * 120.00203 * 180.02562 * 8 7 6 11 11 C 1.45194 * 117.00286 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47226 * 179.97438 * 11 10 8 13 13 O 1.21296 * 119.99951 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00026 * 179.97438 * 12 11 10 15 15 C 1.37105 * 120.00140 * 180.02562 * 14 12 11 16 16 H 1.08010 * 119.99642 * 359.97438 * 15 14 12 17 17 C 1.38946 * 120.00357 * 180.02562 * 15 14 12 18 18 N 1.31407 * 119.99709 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00277 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46792 * 59.99951 * 19 17 15 21 21 H 1.48500 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47295 * 300.00263 * 19 17 15 23 23 N 1.34625 * 108.14532 * 0.26953 * 7 6 5 24 24 C 1.32216 * 109.01590 * 359.97438 * 23 7 6 25 25 C 1.35894 * 120.13786 * 180.43445 * 2 1 3 26 26 H 1.09002 * 109.47206 * 90.00222 * 1 2 3 27 27 H 1.08994 * 109.47319 * 210.00263 * 1 2 3 28 28 H 1.09002 * 109.47168 * 330.00449 * 1 2 3 29 29 H 1.08005 * 119.82209 * 359.96963 * 3 2 1 30 30 H 1.08000 * 119.67662 * 179.97438 * 4 3 2 31 31 H 1.08002 * 126.45898 * 359.97438 * 6 5 4 32 32 H 1.09002 * 109.47186 * 299.99629 * 11 10 8 33 33 H 1.08999 * 109.47239 * 60.00102 * 11 10 8 34 34 H 0.96999 * 120.00223 * 0.02562 * 14 12 11 35 35 H 0.97003 * 119.99891 * 179.97438 * 18 17 15 36 36 H 1.07995 * 120.31823 * 359.44383 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2159 0.0000 4 6 3.5611 1.2208 -0.0005 5 7 4.2621 0.0474 -0.0005 6 6 5.5967 -0.2223 -0.0004 7 6 5.7315 -1.5821 0.0061 8 6 7.0050 -2.3252 0.0140 9 8 8.0602 -1.7226 0.0156 10 8 6.9988 -3.6728 0.0194 11 6 8.2894 -4.3380 0.0265 12 6 8.0850 -5.8310 0.0325 13 8 6.9620 -6.2894 0.0304 14 7 9.1500 -6.6569 0.0390 15 6 8.9641 -8.0153 0.0439 16 1 7.9641 -8.4235 0.0429 17 6 10.0620 -8.8668 0.0512 18 7 11.2786 -8.3702 0.0540 19 14 9.8087 -10.7175 0.0586 20 1 9.0518 -11.1183 -1.1546 21 1 11.1287 -11.3979 0.0653 22 1 9.0440 -11.1077 1.2704 23 7 4.4998 -2.1255 0.0039 24 6 3.6011 -1.1558 -0.0032 25 6 2.1893 -1.1752 -0.0089 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6720 2.1508 -0.0005 30 1 4.0923 2.1612 -0.0009 31 1 6.3979 0.5019 -0.0009 32 1 8.8508 -4.0513 -0.8628 33 1 8.8447 -4.0441 0.9172 34 1 10.0481 -6.2904 0.0403 35 1 12.0451 -8.9646 0.0594 36 1 1.6568 -2.1148 -0.0070 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731239354.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:38 Heat of formation + Delta-G solvation = -27.384454 kcal Electronic energy + Delta-G solvation = -22768.316229 eV Core-core repulsion = 19026.373211 eV Total energy + Delta-G solvation = -3741.943018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.16296 -40.05652 -38.21201 -37.83434 -35.98682 -34.59377 -33.90963 -31.32696 -31.19005 -30.37223 -28.51150 -27.36063 -25.05853 -24.16038 -23.13237 -22.08626 -20.44209 -19.48465 -18.50168 -17.98855 -17.27781 -17.09374 -16.57136 -16.11131 -15.90871 -15.61453 -15.17273 -14.90929 -14.46888 -14.35323 -14.03903 -13.88890 -13.80221 -12.98763 -12.89251 -12.51968 -12.33317 -12.04660 -11.91211 -11.87145 -11.55191 -11.05322 -11.03823 -10.70137 -10.43030 -10.38866 -10.32038 -10.21831 -9.51690 -9.23701 -8.41827 -8.18924 -7.99995 -6.42466 -3.84051 0.25456 0.82639 1.72201 2.05897 2.78747 2.94003 3.21471 3.27577 3.32923 3.34296 3.73584 3.83342 4.04121 4.18378 4.27393 4.35953 4.64457 4.74371 4.90633 4.93908 5.14359 5.15539 5.20504 5.22407 5.28827 5.50259 5.58952 5.60982 5.78077 5.87625 6.04100 6.08381 6.15193 6.60160 6.61977 7.39391 7.55034 7.92750 8.04369 8.57612 9.15138 9.47790 9.98786 10.74943 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.030763 B = 0.002457 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.952600 B =11391.235153 C =12280.720505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.074 4.074 3 C -0.131 4.131 4 C 0.056 3.944 5 N -0.368 5.368 6 C -0.010 4.010 7 C 0.028 3.972 8 C 0.549 3.451 9 O -0.509 6.509 10 O -0.302 6.302 11 C 0.058 3.942 12 C 0.440 3.560 13 O -0.570 6.570 14 N -0.555 5.555 15 C -0.300 4.300 16 H 0.105 0.895 17 C 0.024 3.976 18 N -0.899 5.899 19 Si 0.935 3.065 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.434 5.434 24 C 0.227 3.773 25 C -0.073 4.073 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.153 0.847 30 H 0.168 0.832 31 H 0.201 0.799 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.395 0.605 35 H 0.273 0.727 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.468 23.316 -0.145 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.152 4.152 4 C -0.064 4.064 5 N -0.040 5.040 6 C -0.146 4.146 7 C -0.104 4.104 8 C 0.392 3.608 9 O -0.398 6.398 10 O -0.215 6.215 11 C -0.019 4.019 12 C 0.225 3.775 13 O -0.453 6.453 14 N -0.193 5.193 15 C -0.430 4.430 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.540 5.540 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 N -0.154 5.154 24 C -0.019 4.019 25 C -0.093 4.093 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.170 0.830 30 H 0.185 0.815 31 H 0.217 0.783 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.783 22.190 -0.136 27.822 hybrid contribution 1.032 0.263 -0.002 1.065 sum -15.751 22.453 -0.138 27.427 Atomic orbital electron populations 1.20777 0.89441 1.03550 1.03021 1.19773 0.97197 0.91896 0.99086 1.20777 0.92053 0.99399 1.02957 1.21646 0.93040 0.88520 1.03232 1.42814 1.06948 1.08052 1.46179 1.22493 0.83911 0.97181 1.10978 1.19393 0.91220 0.89894 1.09878 1.19642 0.86739 0.81650 0.72769 1.90852 1.31677 1.70254 1.46988 1.86729 1.34277 1.18297 1.82188 1.22830 0.82379 0.93075 1.03628 1.19307 0.86284 0.86118 0.85808 1.90588 1.23284 1.76776 1.54665 1.41682 1.07031 1.06303 1.64272 1.19681 0.95081 0.80159 1.48031 0.87695 1.25295 0.94542 1.00944 0.97058 1.69609 0.97886 1.36530 1.49978 0.85860 0.77300 0.81550 0.79173 1.19790 1.20935 1.19787 1.71090 0.97650 1.28115 1.18551 1.21078 0.94655 0.79842 1.06342 1.20227 0.87842 0.99989 1.01259 0.90451 0.90738 0.90970 0.82951 0.81516 0.78258 0.89322 0.89331 0.77177 0.91675 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 10.02 36.00 0.36 -0.07 16 2 C -0.07 -0.49 5.88 -104.58 -0.62 -1.11 16 3 C -0.13 -0.69 9.67 -39.90 -0.39 -1.08 16 4 C 0.06 0.36 10.93 -16.59 -0.18 0.18 16 5 N -0.37 -3.95 2.93 -62.36 -0.18 -4.13 16 6 C -0.01 -0.12 11.47 -16.21 -0.19 -0.31 16 7 C 0.03 0.46 6.97 -83.47 -0.58 -0.13 16 8 C 0.55 10.17 7.96 34.48 0.27 10.44 16 9 O -0.51 -9.38 16.66 -19.28 -0.32 -9.70 16 10 O -0.30 -6.49 9.76 -47.34 -0.46 -6.96 16 11 C 0.06 1.20 5.95 36.01 0.21 1.42 16 12 C 0.44 11.24 7.86 -10.99 -0.09 11.16 16 13 O -0.57 -16.85 16.08 -14.12 -0.23 -17.08 16 14 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 15 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 16 H 0.11 3.12 7.16 -52.48 -0.38 2.74 16 17 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 19 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 N -0.43 -7.50 11.35 -9.36 -0.11 -7.61 16 24 C 0.23 3.01 7.79 -156.04 -1.22 1.79 16 25 C -0.07 -0.72 9.75 -39.30 -0.38 -1.10 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 28 H 0.07 0.18 8.10 -51.93 -0.42 -0.24 16 29 H 0.15 0.29 8.06 -52.48 -0.42 -0.13 16 30 H 0.17 0.48 8.06 -52.49 -0.42 0.05 16 31 H 0.20 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 33 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -36.94 331.63 -7.32 -44.26 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -3.63 Total: 5.51 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: -3.03 Total: 13.05 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.38 Total: -50.35 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.01 Total: -33.74 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.94 -7.32 -44.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239354.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.877 kcal (2) G-P(sol) polarization free energy of solvation -36.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds