Wall clock time and date at job start Tue Mar 31 2020 03:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86796 * 120.00347 * 2 1 4 4 H 1.48502 * 109.47611 * 240.00851 * 3 2 1 5 5 H 1.48498 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47256 * 120.00668 * 3 2 1 7 7 C 1.38949 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00174 * 179.97438 * 7 2 1 9 9 N 1.37105 * 120.00352 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00452 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99604 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00261 * 180.02562 * 10 9 7 13 13 O 1.45200 * 109.47283 * 180.02562 * 12 10 9 14 14 C 1.34233 * 116.99865 * 179.97438 * 13 12 10 15 15 O 1.20814 * 120.00035 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99674 * 179.97438 * 14 13 12 17 17 C 1.50691 * 109.46964 * 179.97438 * 16 14 13 18 18 N 1.30242 * 126.10985 * 269.97782 * 17 16 14 19 19 N 1.39866 * 110.09040 * 180.02562 * 18 17 16 20 20 H 0.97010 * 125.46262 * 179.97438 * 19 18 17 21 21 C 1.37036 * 109.07908 * 0.02562 * 19 18 17 22 22 C 1.39284 * 133.85594 * 180.02562 * 21 19 18 23 23 C 1.36591 * 119.85616 * 179.97438 * 22 21 19 24 24 C 1.38965 * 120.81130 * 359.97438 * 23 22 21 25 25 C 1.36465 * 120.62952 * 0.02562 * 24 23 22 26 26 C 1.39946 * 119.63644 * 359.97438 * 25 24 23 27 27 H 0.97006 * 119.99844 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99587 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47357 * 59.99875 * 12 10 9 30 30 H 1.09002 * 109.46756 * 299.99897 * 12 10 9 31 31 H 1.08997 * 109.47285 * 59.99823 * 16 14 13 32 32 H 1.09000 * 109.46973 * 299.99577 * 16 14 13 33 33 H 1.08002 * 120.07247 * 359.97438 * 22 21 19 34 34 H 1.07996 * 119.59189 * 179.97438 * 23 22 21 35 35 H 1.08001 * 119.68212 * 180.28368 * 24 23 22 36 36 H 1.07999 * 120.18141 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1018 1.6965 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0005 11 8 3.2100 -3.5579 -0.0010 12 6 1.2435 -4.8630 -0.0011 13 8 2.1871 -5.9666 -0.0004 14 6 1.6739 -7.2070 -0.0003 15 8 0.4762 -7.3652 -0.0003 16 6 2.5919 -8.4022 -0.0001 17 6 1.7712 -9.6660 0.0007 18 7 1.3538 -10.3095 1.0533 19 7 0.6218 -11.4373 0.6680 20 1 0.2092 -12.0740 1.2725 21 6 0.5819 -11.4994 -0.7004 22 6 0.0073 -12.3841 -1.6099 23 6 0.1480 -12.1672 -2.9511 24 6 0.8592 -11.0710 -3.4241 25 6 1.4329 -10.1875 -2.5566 26 6 1.3028 -10.3881 -1.1777 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6172 -4.9205 -0.8913 30 1 0.6166 -4.9208 0.8887 31 1 3.2208 -8.3772 0.8899 32 1 3.2207 -8.3775 -0.8901 33 1 -0.5483 -13.2398 -1.2554 34 1 -0.2989 -12.8562 -3.6525 35 1 0.9551 -10.9146 -4.4884 36 1 1.9837 -9.3378 -2.9322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731245946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:40 Heat of formation + Delta-G solvation = -35.679929 kcal Electronic energy + Delta-G solvation = -22896.665041 eV Core-core repulsion = 19154.362304 eV Total energy + Delta-G solvation = -3742.302737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59399 -40.21980 -38.13964 -37.43879 -36.12642 -33.98867 -33.68967 -31.38127 -30.85066 -30.04865 -29.12034 -27.85698 -24.61930 -23.31282 -22.47217 -21.88727 -19.80994 -19.54992 -18.14103 -18.04620 -17.62259 -17.21312 -16.36370 -16.27733 -15.55388 -15.50791 -14.89332 -14.69983 -14.43666 -14.25033 -14.09947 -13.92388 -13.47994 -12.89406 -12.80911 -12.23016 -12.16937 -12.05372 -11.95340 -11.61056 -11.35963 -11.10359 -10.99131 -10.60126 -10.48170 -10.40056 -10.31556 -10.24158 -9.58475 -8.94025 -8.51212 -8.26133 -8.07329 -6.48863 -3.90980 0.66830 1.25207 1.99647 2.30746 2.38453 2.89421 3.16410 3.23674 3.28555 3.55502 3.75104 4.05551 4.13078 4.26012 4.41796 4.67044 4.71932 4.91710 5.09008 5.11399 5.14496 5.16752 5.19401 5.34126 5.53869 5.58798 5.69590 5.71734 6.02568 6.07355 6.16716 6.26374 6.57646 6.63330 7.02176 7.31648 7.48615 7.84075 7.96946 8.49622 9.08011 9.40458 9.90390 10.68334 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.032955 B = 0.002417 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.441336 B =11582.976197 C =11814.436436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.323 6.323 14 C 0.463 3.537 15 O -0.504 6.504 16 C -0.034 4.034 17 C 0.116 3.884 18 N -0.232 5.232 19 N -0.506 5.506 20 H 0.441 0.559 21 C 0.129 3.871 22 C -0.144 4.144 23 C -0.070 4.070 24 C -0.159 4.159 25 C -0.037 4.037 26 C -0.163 4.163 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 -23.996 -4.206 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.238 6.238 14 C 0.304 3.696 15 O -0.392 6.392 16 C -0.073 4.073 17 C -0.063 4.063 18 N -0.046 5.046 19 N -0.221 5.221 20 H 0.285 0.715 21 C 0.013 3.987 22 C -0.166 4.166 23 C -0.090 4.090 24 C -0.178 4.178 25 C -0.058 4.058 26 C -0.171 4.171 27 H 0.084 0.916 28 H 0.228 0.772 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.306 -23.874 -2.894 24.051 hybrid contribution -0.827 0.470 -0.431 1.044 sum -1.133 -23.404 -3.325 23.666 Atomic orbital electron populations 1.69609 1.06010 1.28585 1.49615 1.25313 0.95685 0.99875 0.96891 0.85853 0.78742 0.80064 0.79199 1.19736 1.20895 1.19752 1.19679 0.93455 0.81761 1.48282 0.87642 1.41701 1.09379 1.04091 1.63832 1.19312 0.88333 0.84058 0.85957 1.90562 1.13383 1.86793 1.55257 1.22756 0.90824 0.84457 1.03559 1.86528 1.40286 1.13958 1.83017 1.23246 0.88441 0.84770 0.73189 1.90693 1.16735 1.86731 1.45014 1.19569 0.95636 0.83912 1.08224 1.22613 0.98428 0.95931 0.89294 1.76517 1.08603 0.96496 1.22993 1.45834 1.48876 1.23780 1.03600 0.71469 1.18830 0.98150 0.96766 0.84917 1.19816 1.04501 1.00143 0.92111 1.20736 0.96765 0.97084 0.94433 1.20687 1.01217 0.96013 0.99932 1.20422 0.96839 0.98248 0.90274 1.19683 1.05836 0.97415 0.94182 0.91578 0.77156 0.89482 0.89541 0.85245 0.85013 0.85686 0.85316 0.85419 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.15 13.05 55.50 0.72 -23.42 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.55 -14.00 5.29 -10.96 -0.06 -14.06 16 10 C 0.44 10.56 7.86 -10.99 -0.09 10.47 16 11 O -0.58 -15.90 16.08 -14.12 -0.23 -16.13 16 12 C 0.06 1.18 5.94 36.00 0.21 1.39 16 13 O -0.32 -5.89 9.76 -45.91 -0.45 -6.34 16 14 C 0.46 7.23 7.95 36.01 0.29 7.52 16 15 O -0.50 -9.16 15.78 -18.74 -0.30 -9.45 16 16 C -0.03 -0.39 6.41 -29.04 -0.19 -0.57 16 17 C 0.12 1.47 5.93 -80.20 -0.48 1.00 16 18 N -0.23 -3.08 12.55 34.83 0.44 -2.64 16 19 N -0.51 -5.45 7.37 32.36 0.24 -5.21 16 20 H 0.44 3.24 8.96 -182.77 -1.64 1.60 16 21 C 0.13 1.42 7.34 -84.18 -0.62 0.80 16 22 C -0.14 -1.22 10.03 -39.79 -0.40 -1.62 16 23 C -0.07 -0.53 9.96 -39.91 -0.40 -0.93 16 24 C -0.16 -1.34 9.97 -39.95 -0.40 -1.73 16 25 C -0.04 -0.38 10.07 -39.58 -0.40 -0.78 16 26 C -0.16 -1.97 6.33 -105.21 -0.67 -2.63 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 29 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 30 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 31 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -35.33 330.81 -7.88 -43.21 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -4.85 Total: 8.39 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -3.36 Total: 4.98 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 1.34 Total: -45.33 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.97 Total: -31.92 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.33 -7.88 -43.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.531 kcal (2) G-P(sol) polarization free energy of solvation -35.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds