Wall clock time and date at job start Tue Mar 31 2020 03:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00022 * 2 1 4 4 H 1.48494 * 109.47078 * 240.00110 * 3 2 1 5 5 H 1.48491 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46709 * 120.00362 * 3 2 1 7 7 C 1.38650 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99876 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00734 * 359.97438 * 7 2 1 10 10 C 1.35745 * 117.00312 * 185.05737 * 9 7 2 11 11 C 1.38877 * 120.07197 * 354.46843 * 10 9 7 12 12 C 1.38096 * 119.93329 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92625 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47059 * 90.00766 * 14 13 12 16 16 O 1.21252 * 120.00224 * 359.97438 * 15 14 13 17 17 N 1.34780 * 119.99922 * 180.27713 * 15 14 13 18 18 C 1.38122 * 119.99908 * 179.72414 * 17 15 14 19 19 N 1.29558 * 123.57257 * 0.02562 * 18 17 15 20 20 C 1.47168 * 107.55582 * 180.02562 * 19 18 17 21 21 C 1.51606 * 103.88522 * 0.02562 * 20 19 18 22 22 O 1.21250 * 127.46990 * 179.97438 * 21 20 19 23 23 N 1.34982 * 105.05273 * 359.73955 * 21 20 19 24 24 C 1.38298 * 120.14326 * 0.25695 * 13 12 11 25 25 C 1.38111 * 120.06447 * 359.44743 * 24 13 12 26 26 H 0.97000 * 120.00019 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.03246 * 0.02562 * 11 10 9 28 28 H 1.08004 * 119.96668 * 180.02562 * 12 11 10 29 29 H 1.09000 * 109.47468 * 330.00338 * 14 13 12 30 30 H 1.09001 * 109.47115 * 210.00399 * 14 13 12 31 31 H 0.96998 * 120.00268 * 359.71387 * 17 15 14 32 32 H 1.09004 * 110.53932 * 118.60402 * 20 19 18 33 33 H 1.08999 * 110.54501 * 241.25581 * 20 19 18 34 34 H 0.96998 * 124.67186 * 180.22627 * 23 21 20 35 35 H 1.07994 * 119.96878 * 179.70329 * 24 13 12 36 36 H 1.07993 * 120.03462 * 180.27464 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0087 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 3.4571 -3.4396 0.0922 12 6 4.2023 -4.5972 0.1997 13 6 3.5685 -5.8206 0.3202 14 6 4.3849 -7.0820 0.4368 15 6 4.6641 -7.3671 1.8900 16 8 4.2423 -6.6195 2.7464 17 7 5.3878 -8.4497 2.2373 18 6 5.6486 -8.7078 3.5689 19 7 5.2318 -7.9573 4.5392 20 6 5.7070 -8.5541 5.7977 21 6 6.4721 -9.7843 5.3509 22 8 7.0447 -10.5916 6.0513 23 7 6.3730 -9.7890 4.0047 24 6 2.1873 -5.8894 0.3280 25 6 1.4365 -4.7346 0.2269 26 1 -0.4850 0.8400 0.0004 27 1 3.9526 -2.4845 -0.0023 28 1 5.2812 -4.5472 0.1898 29 1 5.3272 -6.9556 -0.0963 30 1 3.8310 -7.9146 0.0031 31 1 5.7255 -9.0476 1.5523 32 1 6.3668 -7.8636 6.3232 33 1 4.8647 -8.8332 6.4307 34 1 6.7625 -10.4622 3.4251 35 1 1.6953 -6.8466 0.4173 36 1 0.3579 -4.7885 0.2375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732273670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:51 Heat of formation + Delta-G solvation = -14.150250 kcal Electronic energy + Delta-G solvation = -22957.002214 eV Core-core repulsion = 19215.633074 eV Total energy + Delta-G solvation = -3741.369140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.04870 -40.03719 -38.89848 -37.81178 -36.52177 -34.75697 -32.83491 -32.49032 -31.47753 -30.16518 -28.22489 -26.60105 -25.17565 -23.25311 -21.99135 -21.70735 -20.77244 -20.05418 -19.25445 -17.98689 -17.24254 -16.95758 -16.86484 -16.69540 -15.49235 -15.03305 -14.81128 -14.53521 -14.44666 -14.19663 -13.87945 -13.63057 -13.48519 -13.38610 -12.96672 -12.70775 -12.46140 -11.89453 -11.72419 -11.55503 -11.26494 -10.88681 -10.79438 -10.65181 -10.47573 -10.43575 -10.35913 -9.65930 -9.33105 -9.01726 -8.81626 -8.16138 -7.18919 -6.44029 -4.02653 1.25695 1.72653 2.12153 2.24765 2.30904 2.83719 2.95254 3.14067 3.16362 3.18460 3.70934 3.97960 4.31184 4.62444 4.81994 4.95212 5.02565 5.07353 5.14025 5.19806 5.30214 5.42173 5.54642 5.62380 5.69728 5.82266 6.20913 6.39116 6.40067 6.41727 6.69633 6.90496 7.04942 7.22198 7.30514 7.34427 7.43824 7.45383 7.82489 7.99274 8.00941 9.01466 9.71166 10.73836 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.026341 B = 0.002582 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.708371 B =10839.694081 C =11318.780116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.159 3.841 11 C -0.233 4.233 12 C -0.053 4.053 13 C -0.180 4.180 14 C -0.069 4.069 15 C 0.503 3.497 16 O -0.439 6.439 17 N -0.655 5.655 18 C 0.547 3.453 19 N -0.496 5.496 20 C -0.012 4.012 21 C 0.507 3.493 22 O -0.491 6.491 23 N -0.691 5.691 24 C -0.056 4.056 25 C -0.192 4.192 26 H 0.271 0.729 27 H 0.127 0.873 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.417 0.583 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.417 0.583 35 H 0.109 0.891 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.572 -18.692 1.600 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.105 3.895 11 C -0.252 4.252 12 C -0.071 4.071 13 C -0.182 4.182 14 C -0.109 4.109 15 C 0.288 3.712 16 O -0.302 6.302 17 N -0.310 5.310 18 C 0.182 3.818 19 N -0.229 5.229 20 C -0.146 4.146 21 C 0.293 3.707 22 O -0.362 6.362 23 N -0.347 5.347 24 C -0.075 4.075 25 C -0.211 4.211 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.253 0.747 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.256 0.744 35 H 0.127 0.873 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.511 -17.359 2.939 21.035 hybrid contribution 1.438 -0.648 -0.606 1.690 sum 12.949 -18.007 2.333 22.302 Atomic orbital electron populations 1.70029 1.05969 1.27807 1.45882 1.25293 0.95845 0.98851 0.96507 0.85779 0.78709 0.79748 0.79198 1.19507 1.20281 1.19454 1.21290 0.91795 0.80814 1.52892 0.89070 1.83974 1.34416 1.11493 1.78021 1.19401 0.90316 0.88039 0.91768 1.21103 0.93798 0.98805 1.11525 1.20506 0.98057 0.91728 0.96824 1.18547 0.93175 0.92495 1.13943 1.20382 1.01754 0.98665 0.90124 1.21556 0.77423 0.79115 0.93081 1.90905 1.44589 1.43549 1.51122 1.43357 1.55332 1.29608 1.02706 1.19647 0.89601 0.84748 0.87825 1.75967 1.26224 1.24521 0.96217 1.23374 1.00887 0.93378 0.96928 1.21624 0.79746 0.87947 0.81353 1.90823 1.43161 1.43641 1.58543 1.44453 1.53199 1.26838 1.10231 1.20399 0.92677 0.96771 0.97614 1.20160 0.99555 0.90263 1.11125 0.91950 0.85544 0.87733 0.88363 0.88328 0.74688 0.84938 0.84887 0.74430 0.87285 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.39 -10.99 9.49 30.88 0.29 -10.69 16 8 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 9 O -0.18 -5.04 9.76 0.06 0.00 -5.04 16 10 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.23 -5.04 9.17 -39.40 -0.36 -5.40 16 12 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 13 C -0.18 -2.85 4.38 -104.58 -0.46 -3.31 16 14 C -0.07 -0.69 5.83 -29.04 -0.17 -0.86 16 15 C 0.50 5.90 7.78 -10.98 -0.09 5.81 16 16 O -0.44 -7.67 14.55 5.58 0.08 -7.59 16 17 N -0.66 -4.96 5.37 -12.77 -0.07 -5.03 16 18 C 0.55 5.21 8.62 -320.47 -2.76 2.45 16 19 N -0.50 -6.32 9.73 -62.10 -0.60 -6.92 16 20 C -0.01 -0.11 7.94 -4.38 -0.03 -0.15 16 21 C 0.51 4.81 8.87 -10.45 -0.09 4.72 16 22 O -0.49 -6.05 18.02 5.58 0.10 -5.95 16 23 N -0.69 -4.85 5.92 -12.44 -0.07 -4.93 16 24 C -0.06 -0.97 9.69 -39.61 -0.38 -1.35 16 25 C -0.19 -4.04 9.99 -39.39 -0.39 -4.44 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.13 2.74 5.64 -52.48 -0.30 2.45 16 28 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.42 1.10 8.82 -40.82 -0.36 0.74 16 32 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.42 1.54 8.96 -40.82 -0.37 1.18 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -37.72 325.04 -8.50 -46.23 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -3.38 Total: 3.35 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -5.19 Total: -9.96 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.01 Total: -41.49 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.18 Total: -18.58 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.72 -8.50 -46.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732273670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.075 kcal (2) G-P(sol) polarization free energy of solvation -37.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds