Wall clock time and date at job start Tue Mar 31 2020 03:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48504 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47196 * 300.00224 * 3 2 1 6 6 H 1.48506 * 109.46817 * 60.00187 * 3 2 1 7 7 C 1.37884 * 120.00577 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99483 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46934 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99791 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00627 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99734 * 180.02562 * 11 10 9 14 14 O 1.45206 * 109.47181 * 180.02562 * 13 11 10 15 15 C 1.34905 * 116.99691 * 180.02562 * 14 13 11 16 16 O 1.21645 * 120.00375 * 359.97438 * 15 14 13 17 17 C 1.46372 * 119.99566 * 180.02562 * 15 14 13 18 18 C 1.40641 * 126.59640 * 359.96979 * 17 15 14 19 19 N 1.30705 * 108.73475 * 180.02562 * 18 17 15 20 20 N 1.40015 * 109.63220 * 0.02562 * 19 18 17 21 21 C 1.36223 * 131.99296 * 180.02562 * 20 19 18 22 22 C 1.35205 * 120.70979 * 179.97438 * 21 20 19 23 23 C 1.40149 * 120.31209 * 359.97438 * 22 21 20 24 24 C 1.36472 * 119.39609 * 359.97438 * 23 22 21 25 25 C 1.36548 * 107.92769 * 0.02562 * 20 19 18 26 26 H 0.97000 * 120.00398 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47680 * 59.99815 * 9 7 2 28 28 H 1.08997 * 109.47364 * 299.99661 * 9 7 2 29 29 H 0.96994 * 119.99880 * 359.97438 * 10 9 7 30 30 H 1.08998 * 109.47376 * 60.00244 * 13 11 10 31 31 H 1.09000 * 109.47641 * 300.00203 * 13 11 10 32 32 H 1.08004 * 125.63127 * 0.02562 * 18 17 15 33 33 H 1.08003 * 119.64971 * 359.97438 * 21 20 19 34 34 H 1.07996 * 119.85003 * 179.70443 * 22 21 20 35 35 H 1.07992 * 120.29624 * 179.97438 * 23 22 21 36 36 H 1.07997 * 120.36705 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 1.7540 -4.8833 -0.0033 12 8 0.5617 -5.1050 -0.0035 13 6 2.7334 -6.0287 -0.0038 14 8 2.0074 -7.2862 -0.0050 15 6 2.7423 -8.4175 -0.0050 16 8 3.9571 -8.3538 -0.0044 17 6 2.0778 -9.7218 -0.0068 18 6 0.6911 -9.9563 -0.0080 19 7 0.4836 -11.2467 -0.0089 20 7 1.7109 -11.9206 -0.0077 21 6 2.0226 -13.2467 -0.0084 22 6 3.3121 -13.6529 -0.0075 23 6 4.3503 -12.7115 -0.0062 24 6 4.0478 -11.3807 -0.0065 25 6 2.7046 -10.9840 -0.0055 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6242 -2.5575 0.8880 29 1 3.1568 -3.4353 -0.0029 30 1 3.3599 -5.9713 0.8863 31 1 3.3602 -5.9705 -0.8936 32 1 -0.0757 -9.1956 -0.0082 33 1 1.2311 -13.9815 -0.0098 34 1 3.5434 -14.7078 -0.0032 35 1 5.3802 -13.0362 -0.0050 36 1 4.8354 -10.6418 -0.0060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733554006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:47 Heat of formation + Delta-G solvation = -15.313093 kcal Electronic energy + Delta-G solvation = -22739.460074 eV Core-core repulsion = 18998.040509 eV Total energy + Delta-G solvation = -3741.419565 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.56385 -40.12778 -38.59637 -37.68965 -36.13541 -34.20962 -33.42067 -32.38424 -31.28322 -29.91478 -28.71704 -26.62721 -24.35212 -24.13932 -22.65545 -22.46914 -20.73825 -19.88287 -18.39000 -17.60293 -17.09509 -16.77307 -16.59170 -16.45620 -15.96834 -15.92639 -15.38472 -15.04535 -14.97803 -14.44737 -14.18712 -13.68364 -13.05901 -12.91798 -12.73446 -12.65790 -12.31528 -12.30147 -11.97623 -11.72872 -11.26301 -10.97177 -10.94569 -10.91763 -10.58553 -10.46567 -10.32960 -9.91265 -9.40254 -9.12938 -8.76714 -8.17331 -7.95418 -6.18036 -4.25150 0.13979 0.51151 1.66260 1.74699 2.58034 2.70058 3.16696 3.23508 3.25007 3.30825 3.33951 3.75978 4.05679 4.14513 4.23980 4.33577 4.36928 4.59079 4.82177 4.95978 5.10830 5.12093 5.18216 5.31458 5.32535 5.40223 5.54252 5.67982 5.85919 6.00150 6.31927 6.46404 7.03466 7.25837 7.34838 7.48535 7.62860 7.86080 7.94067 8.53715 8.74038 9.00305 9.41207 10.92136 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.045608 B = 0.002246 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.780654 B =12463.436003 C =13056.770592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.052 3.948 14 O -0.326 6.326 15 C 0.549 3.451 16 O -0.527 6.527 17 C -0.301 4.301 18 C 0.150 3.850 19 N -0.321 5.321 20 N -0.265 5.265 21 C 0.114 3.886 22 C -0.161 4.161 23 C -0.069 4.069 24 C -0.111 4.111 25 C 0.169 3.831 26 H 0.266 0.734 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.393 0.607 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.213 0.787 33 H 0.175 0.825 34 H 0.160 0.840 35 H 0.148 0.852 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 -28.213 -0.014 29.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.358 5.358 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.025 4.025 14 O -0.241 6.241 15 C 0.395 3.605 16 O -0.418 6.418 17 C -0.313 4.313 18 C -0.031 4.031 19 N -0.141 5.141 20 N -0.028 5.028 21 C -0.012 4.012 22 C -0.182 4.182 23 C -0.092 4.092 24 C -0.131 4.131 25 C 0.048 3.952 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.226 0.774 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.229 0.771 33 H 0.192 0.808 34 H 0.178 0.822 35 H 0.166 0.834 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.463 -29.008 -0.015 29.953 hybrid contribution 1.563 1.717 0.002 2.322 sum 9.026 -27.291 -0.013 28.745 Atomic orbital electron populations 1.69980 1.06110 1.27274 1.48827 1.24961 0.94936 0.99505 0.94664 0.86339 0.79823 0.82859 0.77750 1.19604 1.20789 1.20794 1.21253 0.93375 0.90305 1.53292 0.91705 1.19173 0.88183 0.81561 0.98023 1.46354 1.11493 1.05365 1.72538 1.19904 0.89140 0.83983 0.78674 1.90700 1.16356 1.84570 1.49558 1.22823 0.94310 0.80831 1.04558 1.86610 1.39688 1.13653 1.84136 1.19538 0.84910 0.83616 0.72436 1.90816 1.14559 1.87978 1.48486 1.18628 0.92901 0.89416 1.30397 1.24430 0.95906 0.93189 0.89584 1.77711 0.98072 1.06596 1.31695 1.46147 1.06352 1.05589 1.44737 1.21660 0.98682 0.81883 0.99007 1.20996 0.90522 1.01813 1.04879 1.21402 1.00647 0.92168 0.95023 1.20932 0.93487 0.97484 1.01185 1.19227 0.89950 0.88804 0.97195 0.92444 0.95266 0.95253 0.77430 0.88538 0.88544 0.77104 0.80798 0.82237 0.83414 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 10 N -0.71 -14.74 5.55 -61.47 -0.34 -15.08 16 11 C 0.50 10.12 7.91 -10.99 -0.09 10.04 16 12 O -0.53 -13.10 16.50 -14.10 -0.23 -13.33 16 13 C 0.05 0.82 5.96 36.01 0.21 1.04 16 14 O -0.33 -5.40 9.60 -47.74 -0.46 -5.86 16 15 C 0.55 8.34 7.92 34.00 0.27 8.61 16 16 O -0.53 -8.39 15.50 -19.38 -0.30 -8.69 16 17 C -0.30 -4.06 6.17 -104.70 -0.65 -4.71 16 18 C 0.15 1.86 11.79 -17.12 -0.20 1.66 16 19 N -0.32 -3.93 12.57 30.77 0.39 -3.54 16 20 N -0.27 -2.79 3.85 -10.54 -0.04 -2.83 16 21 C 0.11 0.72 11.17 -16.68 -0.19 0.53 16 22 C -0.16 -0.66 9.98 -39.94 -0.40 -1.06 16 23 C -0.07 -0.36 10.09 -39.50 -0.40 -0.76 16 24 C -0.11 -0.98 9.73 -39.54 -0.38 -1.37 16 25 C 0.17 1.95 6.76 -84.07 -0.57 1.38 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.21 2.27 8.06 -52.48 -0.42 1.85 16 33 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 34 H 0.16 0.08 8.06 -52.49 -0.42 -0.34 16 35 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 36 H 0.16 1.46 7.12 -52.49 -0.37 1.09 16 LS Contribution 331.49 15.07 5.00 5.00 Total: -1.00 -36.11 331.49 -6.74 -42.84 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.63 Total: 2.33 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -2.83 Total: 8.63 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.74 Total: -46.65 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.99 Total: -27.88 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.11 -6.74 -42.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733554006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.528 kcal (2) G-P(sol) polarization free energy of solvation -36.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds