Wall clock time and date at job start Tue Mar 31 2020 03:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42901 * 109.46963 * 47.55235 * 3 2 1 5 5 C 1.35713 * 116.99403 * 179.97438 * 4 3 2 6 6 C 1.39011 * 119.90813 * 359.72786 * 5 4 3 7 7 C 1.37693 * 120.09423 * 179.76459 * 6 5 4 8 8 C 1.39799 * 119.90222 * 0.52923 * 7 6 5 9 9 C 1.47491 * 120.09560 * 179.70211 * 8 7 6 10 10 O 1.21617 * 120.00289 * 137.67413 * 9 8 7 11 11 N 1.34778 * 119.99734 * 317.67816 * 9 8 7 12 12 C 1.36903 * 119.99938 * 2.07717 * 11 9 8 13 13 H 1.07999 * 120.00373 * 310.53834 * 12 11 9 14 14 C 1.39026 * 120.00116 * 130.54800 * 12 11 9 15 15 N 1.31378 * 120.00228 * 170.29523 * 14 12 11 16 16 Si 1.86805 * 119.99835 * 350.28861 * 14 12 11 17 17 H 1.48498 * 109.46876 * 95.21080 * 16 14 12 18 18 H 1.48495 * 109.47151 * 215.21257 * 16 14 12 19 19 H 1.48503 * 109.47015 * 335.21277 * 16 14 12 20 20 C 1.46502 * 119.99993 * 182.07680 * 11 9 8 21 21 C 1.50701 * 109.46870 * 84.65243 * 20 11 9 22 22 O 1.20816 * 120.00250 * 359.97438 * 21 20 11 23 23 O 1.34238 * 119.99621 * 180.02562 * 21 20 11 24 24 C 1.39799 * 119.81415 * 359.72327 * 8 7 6 25 25 C 1.37690 * 119.90646 * 0.02562 * 24 8 7 26 26 H 4.38441 * 5.44512 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.46618 * 287.55258 * 3 2 1 28 28 H 1.09001 * 109.46579 * 167.55511 * 3 2 1 29 29 H 1.08001 * 119.95222 * 359.97438 * 6 5 4 30 30 H 1.07995 * 120.05093 * 180.23315 * 7 6 5 31 31 H 0.96996 * 120.00302 * 179.97438 * 15 14 12 32 32 H 1.09007 * 109.47217 * 204.65141 * 20 11 9 33 33 H 1.09002 * 109.47057 * 324.65010 * 20 11 9 34 34 H 0.96698 * 116.99642 * 179.97438 * 23 21 20 35 35 H 1.08000 * 120.04814 * 179.97438 * 24 8 7 36 36 H 1.07996 * 119.95200 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.9084 -0.9942 5 6 4.4682 -1.0274 -1.1257 6 6 5.3128 -0.2774 -0.3154 7 6 6.6785 -0.3987 -0.4422 8 6 7.2154 -1.2693 -1.3951 9 6 8.6776 -1.3977 -1.5391 10 8 9.1799 -2.4950 -1.6892 11 7 9.4571 -0.2987 -1.5043 12 6 8.8961 0.9320 -1.2928 13 1 8.0407 1.2428 -1.8742 14 6 9.4277 1.7821 -0.3296 15 7 9.0177 3.0280 -0.2546 16 14 10.7249 1.1526 0.8581 17 1 12.0755 1.4835 0.3368 18 1 10.5351 1.7940 2.1838 19 1 10.5953 -0.3202 0.9976 20 6 10.9048 -0.4213 -1.6928 21 6 11.2204 -0.4311 -3.1664 22 8 10.3278 -0.3451 -3.9760 23 8 12.4933 -0.5365 -3.5794 24 6 6.3623 -2.0178 -2.2116 25 6 4.9978 -1.8943 -2.0746 26 1 -1.0499 -0.0001 -0.0004 27 1 3.0094 -0.3091 0.9798 28 1 3.0088 1.0044 -0.2215 29 1 4.8972 0.3988 0.4170 30 1 7.3340 0.1815 0.1902 31 1 9.3883 3.6209 0.4176 32 1 11.4057 0.4234 -1.2196 33 1 11.2528 -1.3499 -1.2404 34 1 12.6462 -0.5388 -4.5342 35 1 6.7730 -2.6912 -2.9493 36 1 4.3382 -2.4724 -2.7046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736075717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:38 Heat of formation + Delta-G solvation = -59.457263 kcal Electronic energy + Delta-G solvation = -24086.227649 eV Core-core repulsion = 20310.601098 eV Total energy + Delta-G solvation = -3775.626551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.16857 -39.72847 -38.69333 -36.73038 -35.61152 -34.97750 -33.53249 -32.16166 -30.75349 -30.05469 -28.23251 -27.22380 -25.08705 -22.74202 -22.29856 -21.30439 -19.41411 -18.52887 -18.08848 -17.71500 -17.63658 -16.74905 -15.97543 -15.94945 -15.59360 -15.10922 -15.08829 -14.60386 -14.17615 -13.96134 -13.46552 -13.16860 -12.91719 -12.81145 -12.75708 -12.46653 -12.36321 -11.96662 -11.61664 -11.20255 -11.17186 -11.06135 -10.93412 -10.67545 -10.34882 -10.26760 -10.20151 -9.97638 -9.44781 -8.90873 -8.54919 -7.97599 -7.77643 -6.60158 -4.38253 1.59471 1.87949 2.20542 2.58860 2.79794 2.91587 3.06985 3.12856 3.23970 3.59928 3.72708 3.93789 4.20712 4.28051 4.40149 4.82068 5.01214 5.19692 5.27878 5.33805 5.55799 5.66366 5.69448 5.77795 5.81568 5.88993 5.92728 6.08452 6.48820 6.67169 6.83363 6.95690 7.05986 7.09844 7.15302 7.32538 7.63007 7.85645 8.15980 8.44382 8.74418 9.06655 9.40769 10.47887 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.004365 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.870965 B = 6413.137246 C = 7407.053124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.191 4.191 3 C 0.169 3.831 4 O -0.313 6.313 5 C 0.134 3.866 6 C -0.223 4.223 7 C -0.007 4.007 8 C -0.131 4.131 9 C 0.549 3.451 10 O -0.583 6.583 11 N -0.450 5.450 12 C -0.341 4.341 13 H 0.107 0.893 14 C 0.068 3.932 15 N -0.856 5.856 16 Si 0.861 3.139 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.254 1.254 20 C 0.109 3.891 21 C 0.465 3.535 22 O -0.499 6.499 23 O -0.526 6.526 24 C -0.038 4.038 25 C -0.167 4.167 26 H 0.223 0.777 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.151 0.849 31 H 0.278 0.722 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.400 0.600 35 H 0.130 0.870 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.164 -3.610 1.740 7.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.191 4.191 3 C 0.095 3.905 4 O -0.228 6.228 5 C 0.089 3.911 6 C -0.242 4.242 7 C -0.025 4.025 8 C -0.134 4.134 9 C 0.340 3.660 10 O -0.467 6.467 11 N -0.172 5.172 12 C -0.468 4.468 13 H 0.125 0.875 14 C -0.140 4.140 15 N -0.490 5.490 16 Si 0.687 3.313 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.178 1.178 20 C -0.016 4.016 21 C 0.305 3.695 22 O -0.385 6.385 23 O -0.338 6.338 24 C -0.057 4.057 25 C -0.186 4.186 26 H 0.240 0.760 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.146 0.854 30 H 0.169 0.831 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.258 0.742 35 H 0.148 0.852 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.362 -4.000 1.862 7.742 hybrid contribution 0.732 0.373 0.008 0.822 sum -5.630 -3.627 1.870 6.953 Atomic orbital electron populations 1.24946 0.95808 0.99245 0.98848 1.22417 0.93658 1.01395 1.01589 1.19297 0.84563 0.94340 0.92323 1.86002 1.20182 1.60984 1.55600 1.19109 0.80981 0.95569 0.95415 1.21176 0.94460 1.04570 1.03990 1.21530 0.93911 0.91847 0.95250 1.19636 0.93100 1.00546 1.00129 1.18306 0.86799 0.83390 0.77514 1.90657 1.75577 1.26635 1.53816 1.43233 1.02867 1.07458 1.63603 1.19104 1.16940 0.90755 1.20010 0.87513 1.25515 0.97164 0.94984 0.96370 1.69644 1.41825 1.04004 1.33525 0.87079 0.81809 0.80956 0.81473 1.19402 1.20477 1.17763 1.21354 0.87029 1.04763 0.88482 1.24463 0.79572 0.71639 0.93807 1.90668 1.47553 1.44450 1.55839 1.84572 1.31331 1.86004 1.31892 1.20908 0.91512 0.96284 0.96978 1.20133 0.94728 1.02634 1.01073 0.76013 0.89393 0.89147 0.85432 0.83112 0.91127 0.87479 0.87194 0.74232 0.85203 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 19.25 29.55 0.57 -1.11 16 2 C -0.19 -2.28 13.73 -37.12 -0.51 -2.79 16 3 C 0.17 2.06 5.21 34.37 0.18 2.24 16 4 O -0.31 -4.76 10.08 -18.85 -0.19 -4.95 16 5 C 0.13 2.21 6.70 -39.01 -0.26 1.95 16 6 C -0.22 -3.74 9.01 -39.49 -0.36 -4.09 16 7 C -0.01 -0.14 8.09 -39.20 -0.32 -0.45 16 8 C -0.13 -2.77 5.28 -104.96 -0.55 -3.32 16 9 C 0.55 12.95 7.09 -12.49 -0.09 12.86 16 10 O -0.58 -14.56 16.61 5.26 0.09 -14.48 16 11 N -0.45 -10.61 1.55 -117.29 -0.18 -10.79 16 12 C -0.34 -8.42 6.61 -14.99 -0.10 -8.52 16 13 H 0.11 2.92 7.49 -52.49 -0.39 2.52 16 14 C 0.07 1.65 5.16 -17.45 -0.09 1.56 16 15 N -0.86 -21.93 13.95 55.50 0.77 -21.15 16 16 Si 0.86 18.23 24.87 -169.99 -4.23 14.01 16 17 H -0.27 -5.45 6.91 56.52 0.39 -5.06 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.25 -5.35 7.01 56.52 0.40 -4.96 16 20 C 0.11 2.31 4.39 -5.19 -0.02 2.29 16 21 C 0.47 9.59 8.36 36.01 0.30 9.89 16 22 O -0.50 -11.86 17.07 -18.74 -0.32 -12.18 16 23 O -0.53 -8.41 13.42 -39.28 -0.53 -8.93 16 24 C -0.04 -0.71 9.65 -39.20 -0.38 -1.09 16 25 C -0.17 -2.78 9.97 -39.49 -0.39 -3.17 16 26 H 0.22 1.24 7.80 -54.10 -0.42 0.82 16 27 H 0.09 0.92 7.66 -51.93 -0.40 0.52 16 28 H 0.09 1.02 7.64 -51.93 -0.40 0.62 16 29 H 0.13 1.78 6.28 -52.49 -0.33 1.46 16 30 H 0.15 3.12 6.27 -52.49 -0.33 2.79 16 31 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.11 2.21 4.29 -51.92 -0.22 1.98 16 33 H 0.11 2.18 7.56 -51.93 -0.39 1.79 16 34 H 0.40 4.43 9.10 45.56 0.41 4.85 16 35 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -31.68 325.59 -4.17 -35.85 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -2.47 Total: 11.48 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -2.02 Total: 6.24 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.59 Total: -31.94 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.95 Total: -40.54 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.23 Total: 14.01 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.68 -4.17 -35.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736075717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.610 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds