Wall clock time and date at job start Tue Mar 31 2020 03:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40573 * 120.13576 * 2 1 4 4 C 1.34849 * 120.34323 * 179.97438 * 3 2 1 5 5 N 1.36679 * 120.63830 * 359.97438 * 4 3 2 6 6 C 1.36207 * 132.28576 * 180.33828 * 5 4 3 7 7 C 1.36679 * 107.08220 * 180.11028 * 6 5 4 8 8 C 1.47480 * 125.92600 * 179.84045 * 7 6 5 9 9 O 1.21626 * 120.00002 * 7.73607 * 8 7 6 10 10 N 1.34776 * 120.00092 * 187.73980 * 8 7 6 11 11 C 1.36917 * 120.00508 * 175.99401 * 10 8 7 12 12 H 1.08002 * 119.99466 * 337.77490 * 11 10 8 13 13 C 1.39002 * 120.00482 * 158.04587 * 11 10 8 14 14 N 1.31393 * 119.99643 * 356.74114 * 13 11 10 15 15 Si 1.86795 * 120.00102 * 176.73788 * 13 11 10 16 16 H 1.48498 * 109.47348 * 60.00048 * 15 13 11 17 17 H 1.48502 * 109.47234 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47219 * 300.00130 * 15 13 11 19 19 C 1.46500 * 119.99754 * 355.99414 * 10 8 7 20 20 C 1.50706 * 109.47192 * 277.24212 * 19 10 8 21 21 O 1.20830 * 119.99797 * 0.02562 * 20 19 10 22 22 O 1.34222 * 120.00265 * 179.97438 * 20 19 10 23 23 N 1.34591 * 108.14486 * 359.57874 * 7 6 5 24 24 C 1.32259 * 109.03096 * 0.26400 * 23 7 6 25 25 C 1.35902 * 120.13882 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46591 * 89.99811 * 1 2 3 27 27 H 1.08996 * 109.47174 * 210.00068 * 1 2 3 28 28 H 1.09003 * 109.47324 * 330.00394 * 1 2 3 29 29 H 1.08010 * 119.82754 * 359.97438 * 3 2 1 30 30 H 1.07993 * 119.68314 * 180.02562 * 4 3 2 31 31 H 1.08002 * 126.45636 * 359.97438 * 6 5 4 32 32 H 0.97002 * 119.99721 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.47548 * 37.24184 * 19 10 8 34 34 H 1.09002 * 109.47421 * 157.24831 * 19 10 8 35 35 H 0.96697 * 117.00422 * 179.97438 * 22 20 19 36 36 H 1.08000 * 120.32158 * 0.04174 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2128 1.2157 0.0000 4 6 3.5612 1.2206 0.0005 5 7 4.2620 0.0472 0.0016 6 6 5.5970 -0.2230 0.0082 7 6 5.7314 -1.5832 0.0032 8 6 7.0050 -2.3269 0.0042 9 8 8.0560 -1.7328 0.1516 10 7 7.0042 -3.6648 -0.1583 11 6 8.1895 -4.3453 -0.2397 12 1 9.0907 -3.8270 -0.5321 13 6 8.2319 -5.7045 0.0487 14 7 7.1482 -6.3226 0.4610 15 14 9.8293 -6.6521 -0.1502 16 1 10.8667 -6.0650 0.7354 17 1 9.6105 -8.0740 0.2179 18 1 10.2805 -6.5707 -1.5627 19 6 5.7350 -4.3910 -0.2479 20 6 5.2088 -4.6559 1.1392 21 8 5.8300 -4.2766 2.1037 22 8 4.0496 -5.3123 1.3033 23 7 4.4999 -2.1260 0.0032 24 6 3.6009 -1.1559 0.0021 25 6 2.1894 -1.1753 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6721 2.1508 -0.0004 30 1 4.0926 2.1608 0.0009 31 1 6.3983 0.5011 0.0139 32 1 7.1777 -7.2711 0.6619 33 1 5.0123 -3.7925 -0.8025 34 1 5.8940 -5.3383 -0.7631 35 1 3.7528 -5.4590 2.2118 36 1 1.6569 -2.1149 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738790040.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:34 Heat of formation + Delta-G solvation = -11.109168 kcal Electronic energy + Delta-G solvation = -24943.890420 eV Core-core repulsion = 21202.653152 eV Total energy + Delta-G solvation = -3741.237269 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.55598 -39.17185 -38.09280 -37.19705 -35.05009 -34.32807 -34.08458 -31.68667 -30.51554 -29.83358 -27.47059 -26.91986 -25.20599 -23.48591 -22.21664 -21.55593 -20.76914 -19.06290 -17.81392 -16.97308 -16.67204 -16.49683 -16.04374 -15.81140 -15.26847 -15.00157 -14.56274 -14.36620 -14.17535 -13.95315 -13.71271 -13.65555 -13.13322 -12.64314 -12.59002 -12.14223 -11.78454 -11.70800 -11.60739 -11.46348 -11.14159 -10.89165 -10.58763 -10.45552 -10.36185 -10.17044 -9.58415 -9.41720 -8.91956 -8.69625 -8.55080 -7.85564 -7.62605 -6.36950 -3.91831 0.75257 1.35719 2.62543 2.71452 3.23087 3.26181 3.29902 3.52416 3.87471 4.02496 4.25341 4.27946 4.42123 4.55777 4.68425 4.78176 5.01905 5.05167 5.19513 5.25248 5.38743 5.52135 5.63896 5.71232 5.79030 5.84436 6.12311 6.26246 6.48405 6.54777 6.75880 6.92967 6.99162 7.20708 7.51049 7.78167 7.96933 8.10768 8.43462 9.08448 9.25020 9.41668 9.88831 10.65002 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.024456 B = 0.004672 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.647836 B = 5992.271146 C = 6846.175996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.082 4.082 3 C -0.146 4.146 4 C 0.061 3.939 5 N -0.366 5.366 6 C -0.046 4.046 7 C 0.049 3.951 8 C 0.522 3.478 9 O -0.579 6.579 10 N -0.406 5.406 11 C -0.294 4.294 12 H 0.107 0.893 13 C 0.030 3.970 14 N -0.884 5.884 15 Si 0.941 3.059 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.137 3.863 20 C 0.517 3.483 21 O -0.527 6.527 22 O -0.531 6.531 23 N -0.468 5.468 24 C 0.218 3.782 25 C -0.075 4.075 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.146 0.854 30 H 0.161 0.839 31 H 0.191 0.809 32 H 0.273 0.727 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.385 0.615 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.721 10.298 -2.774 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.088 4.088 3 C -0.167 4.167 4 C -0.061 4.061 5 N -0.039 5.039 6 C -0.179 4.179 7 C -0.084 4.084 8 C 0.310 3.690 9 O -0.463 6.463 10 N -0.122 5.122 11 C -0.422 4.422 12 H 0.125 0.875 13 C -0.172 4.172 14 N -0.524 5.524 15 Si 0.767 3.233 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.012 3.988 20 C 0.359 3.641 21 O -0.414 6.414 22 O -0.341 6.341 23 N -0.191 5.191 24 C -0.026 4.026 25 C -0.096 4.096 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.164 0.836 30 H 0.179 0.821 31 H 0.208 0.792 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.150 0.850 35 H 0.240 0.760 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.968 9.698 -2.804 17.234 hybrid contribution 0.653 0.174 0.835 1.075 sum -13.314 9.872 -1.969 16.691 Atomic orbital electron populations 1.20721 0.89942 1.03123 1.02612 1.19660 0.96771 0.92071 1.00280 1.20616 0.92071 0.99046 1.04967 1.21580 0.92978 0.88829 1.02709 1.42765 1.07342 1.07515 1.46298 1.22537 0.82902 0.98114 1.14389 1.21231 0.92872 0.91055 1.03259 1.16699 0.85425 0.82786 0.84051 1.90625 1.31311 1.68437 1.55904 1.43207 1.05773 1.04039 1.59204 1.19774 0.87880 0.91473 1.43059 0.87515 1.25406 0.99107 0.97254 0.95446 1.69727 1.27898 1.11445 1.43350 0.85766 0.80844 0.77809 0.78885 1.19680 1.20836 1.19688 1.21128 0.85749 1.00724 0.91213 1.23496 0.75863 0.71478 0.93268 1.90565 1.57524 1.50592 1.42743 1.84523 1.41116 1.72801 1.35662 1.71174 0.98419 1.27814 1.21685 1.21144 0.94446 0.80531 1.06448 1.20133 0.88190 0.99499 1.01747 0.90833 0.91076 0.91321 0.83587 0.82134 0.79206 0.91616 0.87772 0.84990 0.75956 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.02 36.01 0.36 -0.36 16 2 C -0.08 -0.83 5.88 -104.58 -0.62 -1.45 16 3 C -0.15 -1.34 9.67 -39.90 -0.39 -1.72 16 4 C 0.06 0.67 10.93 -16.59 -0.18 0.49 16 5 N -0.37 -5.81 2.93 -62.34 -0.18 -5.99 16 6 C -0.05 -0.85 11.48 -16.17 -0.19 -1.04 16 7 C 0.05 1.11 6.60 -83.46 -0.55 0.56 16 8 C 0.52 14.16 7.34 -12.50 -0.09 14.07 16 9 O -0.58 -16.87 16.60 5.25 0.09 -16.78 16 10 N -0.41 -11.21 2.20 -117.30 -0.26 -11.47 16 11 C -0.29 -8.41 9.30 -15.00 -0.14 -8.55 16 12 H 0.11 3.09 7.41 -52.49 -0.39 2.70 16 13 C 0.03 0.82 5.25 -17.46 -0.09 0.73 16 14 N -0.88 -23.95 8.81 55.50 0.49 -23.46 16 15 Si 0.94 21.12 29.55 -169.99 -5.02 16.10 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 C 0.14 3.43 4.78 -5.19 -0.02 3.41 16 20 C 0.52 13.00 5.46 36.01 0.20 13.20 16 21 O -0.53 -15.26 16.94 -18.75 -0.32 -15.58 16 22 O -0.53 -11.01 13.42 -39.24 -0.53 -11.54 16 23 N -0.47 -9.89 7.01 -9.35 -0.07 -9.96 16 24 C 0.22 3.80 7.79 -156.02 -1.22 2.58 16 25 C -0.08 -1.00 9.75 -39.31 -0.38 -1.38 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 29 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 30 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.19 3.08 8.06 -52.49 -0.42 2.66 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.11 2.42 5.42 -51.93 -0.28 2.13 16 34 H 0.13 3.37 6.07 -51.93 -0.31 3.06 16 35 H 0.39 6.32 9.10 45.56 0.41 6.74 16 36 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 315.90 15.07 4.76 4.76 Total: -1.00 -36.97 315.90 -7.00 -43.98 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -2.66 Total: 9.41 kcal Atomic # 6 Polarization: 23.84 SS G_CDS: -3.31 Total: 20.54 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.02 Total: -50.87 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.76 Total: -43.91 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.97 -7.00 -43.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738790040.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.867 kcal (2) G-P(sol) polarization free energy of solvation -36.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds