Wall clock time and date at job start Tue Mar 31 2020 03:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30196 * 125.07881 * 2 1 4 4 C 1.34893 * 109.74500 * 179.97438 * 3 2 1 5 5 C 1.46168 * 126.50589 * 180.02562 * 4 3 2 6 6 O 1.21827 * 119.99726 * 184.69809 * 5 4 3 7 7 N 1.34769 * 119.99963 * 4.69598 * 5 4 3 8 8 C 1.36932 * 120.00003 * 4.39527 * 7 5 4 9 9 H 1.07996 * 120.00173 * 327.01454 * 8 7 5 10 10 C 1.38927 * 119.99851 * 147.02032 * 8 7 5 11 11 N 1.31453 * 120.00106 * 352.59818 * 10 8 7 12 12 Si 1.86799 * 119.99820 * 172.59468 * 10 8 7 13 13 H 1.48502 * 109.47043 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47096 * 119.99854 * 12 10 8 15 15 H 1.48492 * 109.47309 * 240.00060 * 12 10 8 16 16 C 1.46497 * 120.00008 * 184.11352 * 7 5 4 17 17 C 1.50705 * 109.47431 * 276.90218 * 16 7 5 18 18 O 1.20826 * 119.99832 * 359.97438 * 17 16 7 19 19 O 1.34232 * 120.00371 * 180.02562 * 17 16 7 20 20 C 1.40292 * 106.98418 * 0.26784 * 4 3 2 21 21 C 1.40093 * 133.57607 * 180.45765 * 20 4 3 22 22 C 1.36413 * 119.20430 * 179.58454 * 21 20 4 23 23 C 1.40343 * 119.55080 * 359.71303 * 22 21 20 24 24 C 1.35072 * 120.43599 * 0.02562 * 23 22 21 25 25 N 1.36282 * 125.07720 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47127 * 90.01887 * 1 2 3 27 27 H 1.09001 * 109.46702 * 210.02193 * 1 2 3 28 28 H 1.08997 * 109.47092 * 330.02287 * 1 2 3 29 29 H 0.97000 * 119.99608 * 180.02562 * 11 10 8 30 30 H 1.09002 * 109.47267 * 36.89612 * 16 7 5 31 31 H 1.08998 * 109.47326 * 156.89825 * 16 7 5 32 32 H 0.96698 * 116.99772 * 179.97438 * 19 17 16 33 33 H 1.08004 * 120.39648 * 359.29958 * 21 20 4 34 34 H 1.07998 * 120.22327 * 179.72911 * 22 21 20 35 35 H 1.08008 * 119.78329 * 179.97438 * 23 22 21 36 36 H 1.07997 * 119.70914 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2552 1.0655 0.0000 4 6 3.5561 0.7088 0.0006 5 6 4.7054 1.6119 0.0013 6 8 5.8341 1.1614 -0.0847 7 7 4.5165 2.9428 0.0970 8 6 3.2559 3.4437 0.2840 9 1 2.4047 2.9395 -0.1492 10 6 3.0718 4.6006 1.0308 11 7 4.0845 5.1332 1.6781 12 14 1.3854 5.3995 1.1150 13 1 0.4231 4.6109 0.3042 14 1 0.9270 5.4403 2.5269 15 1 1.4655 6.7825 0.5804 16 6 5.6606 3.8534 0.0071 17 6 6.3281 3.9559 1.3544 18 8 5.8926 3.3327 2.2934 19 8 7.4060 4.7404 1.5115 20 6 3.5966 -0.6936 -0.0053 21 6 4.6388 -1.6296 0.0005 22 6 4.3384 -2.9603 0.0003 23 6 2.9950 -3.3666 0.0004 24 6 2.0030 -2.4499 0.0002 25 7 2.2902 -1.1153 0.0005 26 1 -0.3633 -0.0003 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 3.9558 5.9407 2.1998 30 1 6.3734 3.4704 -0.7232 31 1 5.3164 4.8398 -0.3038 32 1 7.7995 4.7742 2.3941 33 1 5.6679 -1.3017 0.0004 34 1 5.1289 -3.6961 0.0003 35 1 2.7529 -4.4192 -0.0002 36 1 0.9733 -2.7757 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738839664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:16 Heat of formation + Delta-G solvation = -12.612230 kcal Electronic energy + Delta-G solvation = -25108.275589 eV Core-core repulsion = 21366.973142 eV Total energy + Delta-G solvation = -3741.302446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -42.36683 -39.10345 -37.86825 -37.01328 -34.99033 -34.29897 -33.13243 -31.43291 -31.19399 -29.85548 -28.01520 -26.22573 -24.69271 -23.49677 -22.79881 -20.77426 -20.58438 -19.19841 -17.69670 -16.91720 -16.69875 -16.12002 -15.77073 -15.56490 -15.35990 -15.24318 -14.47407 -14.24360 -14.17542 -13.80974 -13.33808 -13.13524 -12.96440 -12.66451 -12.38096 -11.98364 -11.76758 -11.43484 -11.42574 -11.29512 -11.24093 -10.97848 -10.79160 -10.29430 -10.22913 -10.03607 -9.49966 -9.09263 -8.98567 -8.92464 -8.62908 -7.66193 -6.98399 -6.30471 -3.85871 0.98706 1.42964 2.85164 3.00206 3.25872 3.30069 3.36300 3.59025 3.88684 4.04378 4.33985 4.54996 4.61520 4.70778 4.83825 4.93426 5.04495 5.24103 5.26230 5.34170 5.56786 5.65474 5.83387 5.99628 6.07069 6.14068 6.32250 6.36981 6.49112 6.62477 6.77734 6.86040 6.97449 7.45457 7.74109 7.77800 7.86700 8.33489 8.65418 9.18004 9.39276 9.51681 9.88987 10.78395 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.006335 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.737720 B = 4418.632973 C = 5992.959411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.143 3.857 3 N -0.384 5.384 4 C 0.010 3.990 5 C 0.547 3.453 6 O -0.605 6.605 7 N -0.410 5.410 8 C -0.319 4.319 9 H 0.142 0.858 10 C 0.031 3.969 11 N -0.879 5.879 12 Si 0.930 3.070 13 H -0.264 1.264 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.161 3.839 17 C 0.498 3.502 18 O -0.499 6.499 19 O -0.540 6.540 20 C 0.040 3.960 21 C -0.044 4.044 22 C -0.147 4.147 23 C -0.135 4.135 24 C 0.039 3.961 25 N -0.364 5.364 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.268 0.732 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.388 0.612 33 H 0.156 0.844 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.430 -10.919 -3.910 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.112 4.112 3 N -0.100 5.100 4 C -0.126 4.126 5 C 0.337 3.663 6 O -0.492 6.492 7 N -0.126 5.126 8 C -0.448 4.448 9 H 0.159 0.841 10 C -0.172 4.172 11 N -0.518 5.518 12 Si 0.757 3.243 13 H -0.188 1.188 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.035 3.965 17 C 0.338 3.662 18 O -0.383 6.383 19 O -0.351 6.351 20 C -0.070 4.070 21 C -0.064 4.064 22 C -0.168 4.168 23 C -0.156 4.156 24 C -0.082 4.082 25 N -0.037 5.037 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.132 0.868 32 H 0.244 0.756 33 H 0.173 0.827 34 H 0.151 0.849 35 H 0.160 0.840 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.623 -10.276 -3.968 11.946 hybrid contribution -0.379 -0.201 1.093 1.174 sum -5.003 -10.477 -2.875 11.961 Atomic orbital electron populations 1.20097 0.84761 1.03767 1.03075 1.23711 0.95788 0.79329 1.12376 1.70543 1.01839 1.24744 1.12836 1.20614 0.91588 0.88833 1.11607 1.16538 0.85821 0.81828 0.82101 1.90653 1.23402 1.76674 1.58470 1.43188 1.06782 1.02664 1.60008 1.20838 0.84603 1.08796 1.30521 0.84129 1.25505 0.98990 0.98216 0.94533 1.69687 1.31159 1.21161 1.29813 0.85790 0.82046 0.78462 0.77957 1.18810 1.21064 1.20969 1.20357 0.88528 0.96971 0.90650 1.23452 0.75728 0.74477 0.92511 1.90555 1.61470 1.44313 1.41945 1.84512 1.45162 1.66568 1.38892 1.19238 0.83744 0.94559 1.09489 1.20793 0.99208 0.91073 0.95347 1.21026 0.96251 0.95754 1.03755 1.20737 0.92507 0.99325 1.03010 1.21497 1.00876 0.80948 1.04899 1.42866 1.08037 1.06014 1.46735 0.90569 0.91457 0.88907 0.92189 0.90126 0.86771 0.75567 0.82681 0.84880 0.84014 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 10.32 36.01 0.37 -0.36 16 2 C 0.14 2.57 7.94 -154.52 -1.23 1.35 16 3 N -0.38 -8.69 7.75 -6.73 -0.05 -8.74 16 4 C 0.01 0.24 6.77 -82.57 -0.56 -0.32 16 5 C 0.55 14.61 7.33 -13.08 -0.10 14.51 16 6 O -0.61 -16.51 15.50 5.08 0.08 -16.44 16 7 N -0.41 -11.03 2.15 -117.76 -0.25 -11.29 16 8 C -0.32 -8.61 8.53 -15.02 -0.13 -8.74 16 9 H 0.14 3.74 5.00 -52.49 -0.26 3.47 16 10 C 0.03 0.82 5.12 -17.46 -0.09 0.73 16 11 N -0.88 -24.20 8.71 55.50 0.48 -23.72 16 12 Si 0.93 20.81 29.56 -169.99 -5.02 15.78 16 13 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 C 0.16 3.99 5.10 -5.19 -0.03 3.96 16 17 C 0.50 12.72 6.33 36.01 0.23 12.95 16 18 O -0.50 -14.61 16.03 -18.75 -0.30 -14.91 16 19 O -0.54 -11.34 13.42 -39.26 -0.53 -11.86 16 20 C 0.04 0.81 6.72 -83.96 -0.56 0.25 16 21 C -0.04 -0.77 9.74 -39.54 -0.39 -1.16 16 22 C -0.15 -1.92 10.08 -39.45 -0.40 -2.31 16 23 C -0.13 -1.49 9.98 -39.92 -0.40 -1.89 16 24 C 0.04 0.48 10.77 -16.59 -0.18 0.31 16 25 N -0.36 -6.22 2.94 -57.89 -0.17 -6.39 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.63 7.98 -51.93 -0.41 0.22 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.08 1.84 7.70 -51.93 -0.40 1.44 16 31 H 0.11 2.78 7.09 -51.93 -0.37 2.41 16 32 H 0.39 6.47 9.10 45.56 0.41 6.88 16 33 H 0.16 2.83 7.19 -52.48 -0.38 2.45 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.16 1.31 7.94 -52.49 -0.42 0.89 16 LS Contribution 314.83 15.07 4.74 4.74 Total: -1.00 -36.44 314.83 -7.12 -43.56 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -2.65 Total: 9.97 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: -3.45 Total: 19.28 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.01 Total: -50.13 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.75 Total: -43.20 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.44 -7.12 -43.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738839664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.945 kcal (2) G-P(sol) polarization free energy of solvation -36.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds