Wall clock time and date at job start Tue Mar 31 2020 03:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39810 * 120.07913 * 317.92060 * 3 2 1 5 5 C 1.37645 * 119.92648 * 180.02562 * 4 3 2 6 6 C 1.39181 * 120.07540 * 0.02562 * 5 4 3 7 7 N 1.39184 * 119.92712 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00405 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47567 * 180.02562 * 8 7 6 10 10 O 1.21293 * 119.99796 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00235 * 180.02562 * 9 8 7 12 12 C 1.37101 * 120.00192 * 179.97438 * 11 9 8 13 13 H 1.07994 * 119.99677 * 11.50776 * 12 11 9 14 14 C 1.38950 * 119.99811 * 191.50992 * 12 11 9 15 15 N 1.31409 * 120.00046 * 21.39239 * 14 12 11 16 16 Si 1.86803 * 119.99606 * 201.38693 * 14 12 11 17 17 H 1.48502 * 109.46968 * 84.98894 * 16 14 12 18 18 H 1.48499 * 109.47013 * 204.98721 * 16 14 12 19 19 H 1.48501 * 109.47346 * 324.99004 * 16 14 12 20 20 C 1.46505 * 119.99824 * 0.02562 * 11 9 8 21 21 C 1.50699 * 109.47043 * 84.66857 * 20 11 9 22 22 O 1.20823 * 120.00301 * 359.97438 * 21 20 11 23 23 O 1.34227 * 120.00043 * 180.02562 * 21 20 11 24 24 C 1.39181 * 120.14912 * 0.26693 * 6 5 4 25 25 C 1.37648 * 120.07551 * 359.45722 * 24 6 5 26 26 H 1.08001 * 120.03294 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.96785 * 179.97438 * 5 4 3 28 28 H 0.97008 * 119.99821 * 0.02562 * 7 6 5 29 29 H 1.09002 * 109.47175 * 300.00358 * 8 7 6 30 30 H 1.08996 * 109.47060 * 60.00027 * 8 7 6 31 31 H 0.97001 * 119.99531 * 179.97438 * 15 14 12 32 32 H 1.08998 * 109.46912 * 204.66515 * 20 11 9 33 33 H 1.08993 * 109.47024 * 324.66559 * 20 11 9 34 34 H 0.96698 * 117.00585 * 179.97438 * 23 21 20 35 35 H 1.08003 * 119.96090 * 179.70937 * 24 6 5 36 36 H 1.08002 * 120.03934 * 180.27548 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.8970 0.8108 5 6 4.6456 -0.8933 0.8087 6 6 5.3395 0.0031 0.0011 7 7 6.7313 0.0045 0.0018 8 6 7.4634 0.9468 -0.8480 9 6 8.9451 0.7435 -0.6631 10 8 9.3498 -0.1048 0.1035 11 7 9.8205 1.5050 -1.3488 12 6 11.1685 1.3204 -1.1803 13 1 11.5325 0.4535 -0.6489 14 6 12.0663 2.2487 -1.6931 15 7 11.6676 3.4731 -1.9552 16 14 13.8402 1.7561 -2.0097 17 1 13.9470 1.1246 -3.3495 18 1 14.7051 2.9622 -1.9606 19 1 14.2787 0.7899 -0.9707 20 6 9.3316 2.5308 -2.2735 21 6 9.0389 3.7968 -1.5103 22 8 9.2196 3.8379 -0.3163 23 8 8.5764 4.8785 -2.1566 24 6 4.6447 0.9021 -0.8027 25 6 3.2682 0.9000 -0.8097 26 1 2.7313 -1.5925 1.4380 27 1 5.1878 -1.5861 1.4350 28 1 7.2167 -0.6191 0.5646 29 1 7.2007 0.7744 -1.8917 30 1 7.1989 1.9672 -0.5706 31 1 12.2945 4.1211 -2.3128 32 1 10.0909 2.7298 -3.0298 33 1 8.4204 2.1793 -2.7573 34 1 8.4030 5.6671 -1.6246 35 1 5.1862 1.5995 -1.4247 36 1 2.7297 1.5949 -1.4370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079019.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:11 Heat of formation + Delta-G solvation = -51.050462 kcal Electronic energy + Delta-G solvation = -23751.987749 eV Core-core repulsion = 20009.018495 eV Total energy + Delta-G solvation = -3742.969253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.93421 -39.45862 -38.41544 -36.68315 -35.61518 -35.02423 -34.56151 -32.05059 -31.19710 -30.14043 -27.99824 -27.11466 -24.63170 -23.05789 -22.32742 -21.31017 -19.37129 -18.83138 -17.74357 -17.39379 -17.08119 -16.07018 -15.96794 -15.82740 -14.87189 -14.75860 -14.61348 -14.48400 -14.35194 -13.95230 -13.76093 -13.54828 -13.46882 -13.04966 -12.65825 -12.44823 -12.26629 -12.04007 -11.95739 -11.83179 -11.65558 -11.09353 -11.01591 -10.62312 -10.55555 -10.48077 -10.07766 -9.89440 -9.23928 -9.13066 -8.89179 -8.20502 -7.45087 -6.66020 -4.09369 0.98869 1.34608 2.72119 2.98301 3.02403 3.12948 3.16144 3.21635 3.33908 3.42736 3.87599 3.93781 4.03144 4.05360 4.49529 4.76501 4.82130 4.84898 5.17535 5.22697 5.38512 5.45130 5.55521 5.61895 5.73205 5.87632 6.07914 6.20657 6.25198 6.35311 6.45528 6.61586 7.19168 7.30405 7.35450 7.55934 7.68924 7.79919 8.11511 8.79656 8.84299 9.05416 9.52127 10.41394 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.003329 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.197720 B = 8408.646033 C = 9240.412654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.270 3.730 3 C -0.117 4.117 4 C -0.016 4.016 5 C -0.204 4.204 6 C 0.260 3.740 7 N -0.710 5.710 8 C 0.104 3.896 9 C 0.447 3.553 10 O -0.575 6.575 11 N -0.421 5.421 12 C -0.305 4.305 13 H 0.112 0.888 14 C 0.031 3.969 15 N -0.881 5.881 16 Si 0.934 3.066 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.135 3.865 21 C 0.488 3.512 22 O -0.507 6.507 23 O -0.531 6.531 24 C -0.210 4.210 25 C -0.013 4.013 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.415 0.585 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.274 0.726 32 H 0.143 0.857 33 H 0.079 0.921 34 H 0.394 0.606 35 H 0.131 0.869 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.038 -1.350 -2.569 9.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.043 4.043 3 C -0.123 4.123 4 C -0.037 4.037 5 C -0.227 4.227 6 C 0.149 3.851 7 N -0.337 5.337 8 C -0.025 4.025 9 C 0.235 3.765 10 O -0.459 6.459 11 N -0.140 5.140 12 C -0.432 4.432 13 H 0.130 0.870 14 C -0.172 4.172 15 N -0.521 5.521 16 Si 0.760 3.240 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.193 1.193 20 C 0.009 3.991 21 C 0.329 3.671 22 O -0.393 6.393 23 O -0.342 6.342 24 C -0.233 4.233 25 C -0.035 4.035 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.254 0.746 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.160 0.840 33 H 0.096 0.904 34 H 0.251 0.749 35 H 0.149 0.851 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.169 -1.809 -2.280 10.577 hybrid contribution 1.533 0.602 0.393 1.693 sum -8.635 -1.207 -1.887 8.921 Atomic orbital electron populations 1.81220 1.12317 1.09420 1.09768 1.25786 0.92673 0.92970 0.92908 1.15726 0.83970 1.05156 1.07456 1.20785 0.93253 0.95006 0.94658 1.20494 0.93748 1.03497 1.04932 1.18128 0.83629 0.91891 0.91410 1.44637 1.02256 1.39843 1.46955 1.21183 0.92216 0.93874 0.95183 1.19737 0.86767 0.86484 0.83527 1.90527 1.78995 1.37445 1.38893 1.43426 1.06336 1.28373 1.35826 1.19794 0.78940 1.08544 1.35942 0.87003 1.25264 1.00934 0.93885 0.97152 1.69807 1.37235 1.02141 1.42903 0.85804 0.80823 0.78170 0.79168 1.20004 1.20951 1.19316 1.20966 1.01051 0.83796 0.93326 1.23835 0.71335 0.84988 0.86938 1.90642 1.47856 1.83749 1.17029 1.84518 1.78879 1.23912 1.46885 1.20598 0.93817 1.03482 1.05381 1.20830 0.93345 0.94802 0.94505 0.85403 0.85104 0.74571 0.90026 0.90150 0.91500 0.83998 0.90359 0.74899 0.85103 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.36 18.54 41.84 0.78 -5.58 16 2 C 0.27 3.24 15.33 -22.47 -0.34 2.89 16 3 C -0.12 -1.22 5.74 -106.79 -0.61 -1.84 16 4 C -0.02 -0.15 9.75 -39.21 -0.38 -0.53 16 5 C -0.20 -2.15 9.87 -39.45 -0.39 -2.54 16 6 C 0.26 3.17 6.65 -83.82 -0.56 2.61 16 7 N -0.71 -10.27 5.68 -59.80 -0.34 -10.61 16 8 C 0.10 1.64 3.98 -5.19 -0.02 1.62 16 9 C 0.45 9.58 7.51 -10.99 -0.08 9.50 16 10 O -0.57 -14.08 15.27 5.55 0.08 -13.99 16 11 N -0.42 -9.53 2.17 -116.10 -0.25 -9.78 16 12 C -0.31 -7.72 9.42 -14.93 -0.14 -7.86 16 13 H 0.11 2.99 7.31 -52.49 -0.38 2.61 16 14 C 0.03 0.73 4.95 -17.47 -0.09 0.65 16 15 N -0.88 -21.21 9.27 55.50 0.51 -20.70 16 16 Si 0.93 19.12 29.60 -169.99 -5.03 14.09 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 C 0.13 2.59 4.98 -5.19 -0.03 2.56 16 21 C 0.49 9.68 6.05 36.00 0.22 9.90 16 22 O -0.51 -12.08 17.03 -18.75 -0.32 -12.40 16 23 O -0.53 -8.40 13.42 -39.25 -0.53 -8.93 16 24 C -0.21 -2.29 9.28 -39.45 -0.37 -2.66 16 25 C -0.01 -0.13 9.75 -39.21 -0.38 -0.51 16 26 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.42 6.38 7.44 -40.82 -0.30 6.08 16 29 H 0.08 1.07 7.22 -51.93 -0.37 0.70 16 30 H 0.08 1.27 7.34 -51.93 -0.38 0.89 16 31 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 32 H 0.14 2.89 6.01 -51.93 -0.31 2.58 16 33 H 0.08 1.14 6.66 -51.93 -0.35 0.80 16 34 H 0.39 4.68 9.10 45.56 0.41 5.09 16 35 H 0.13 1.31 6.70 -52.48 -0.35 0.96 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -31.45 325.84 -5.80 -37.25 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -2.44 Total: 11.96 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: -3.17 Total: 13.78 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.70 Total: -46.66 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.76 Total: -35.32 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.45 -5.80 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079019.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.804 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds