Wall clock time and date at job start Tue Mar 31 2020 04:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99770 * 2 1 4 4 O 1.20826 * 119.99890 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99716 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47261 * 180.02562 * 5 3 2 7 7 C 1.36689 * 120.00532 * 263.37805 * 6 5 3 8 8 H 1.07995 * 120.00381 * 130.95629 * 7 6 5 9 9 C 1.39125 * 119.99342 * 310.96141 * 7 6 5 10 10 N 1.31316 * 120.00167 * 359.08049 * 9 7 6 11 11 Si 1.86807 * 119.99927 * 179.08685 * 9 7 6 12 12 H 1.48502 * 109.46802 * 4.99226 * 11 9 7 13 13 H 1.48497 * 109.47088 * 124.99105 * 11 9 7 14 14 H 1.48496 * 109.46963 * 244.99131 * 11 9 7 15 15 C 1.34777 * 119.99837 * 83.37200 * 6 5 3 16 16 O 1.21727 * 120.00268 * 2.39528 * 15 6 5 17 17 C 1.46821 * 119.99926 * 182.39445 * 15 6 5 18 18 C 1.37800 * 119.94599 * 332.54345 * 17 15 6 19 19 C 1.39830 * 119.99705 * 179.79497 * 18 17 15 20 20 C 1.36298 * 119.93514 * 0.47159 * 19 18 17 21 21 C 1.40882 * 119.82094 * 359.76852 * 20 19 18 22 22 N 1.32594 * 132.18564 * 180.02562 * 21 20 19 23 23 C 1.33235 * 109.14828 * 179.97438 * 22 21 20 24 24 C 1.35452 * 108.58557 * 0.02562 * 23 22 21 25 25 N 1.36297 * 107.17059 * 0.02562 * 24 23 22 26 26 H 1.09005 * 109.47070 * 299.99133 * 1 2 3 27 27 H 1.08995 * 109.47485 * 59.99881 * 1 2 3 28 28 H 1.09001 * 109.47368 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46881 * 60.00444 * 5 3 2 30 30 H 1.09000 * 109.47275 * 300.00462 * 5 3 2 31 31 H 0.97005 * 120.00145 * 180.02562 * 10 9 7 32 32 H 1.07994 * 120.00252 * 0.02776 * 18 17 15 33 33 H 1.07998 * 120.03252 * 180.26146 * 19 18 17 34 34 H 1.07993 * 120.08978 * 179.75111 * 20 19 18 35 35 H 1.08002 * 125.70357 * 180.02562 * 23 22 21 36 36 H 1.07998 * 126.41095 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.3069 3.2968 -1.1745 8 1 3.8791 4.2586 -1.4159 9 6 5.1889 2.6856 -2.0600 10 7 5.7229 1.5245 -1.7583 11 14 5.6136 3.5169 -3.6781 12 1 4.9815 4.8599 -3.7254 13 1 7.0875 3.6593 -3.7895 14 1 5.1093 2.6924 -4.8055 15 6 4.0431 3.3638 1.1607 16 8 3.7957 2.8028 2.2122 17 6 4.4085 4.7858 1.1556 18 6 5.2070 5.2873 0.1507 19 6 5.5522 6.6423 0.1425 20 6 5.1060 7.4638 1.1343 21 6 4.2940 6.9446 2.1619 22 7 3.7344 7.5067 3.2244 23 6 3.0520 6.5825 3.8992 24 6 3.1767 5.3976 3.2549 25 7 3.9582 5.6154 2.1597 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.9563 0.7806 -0.8892 30 1 3.9557 0.7809 0.8908 31 1 6.3382 1.0986 -2.3756 32 1 5.5632 4.6346 -0.6325 33 1 6.1745 7.0368 -0.6471 34 1 5.3743 8.5099 1.1326 35 1 2.4929 6.7502 4.8080 36 1 2.7389 4.4565 3.5533 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770084723.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:50 Heat of formation + Delta-G solvation = -6.811068 kcal Electronic energy + Delta-G solvation = -25103.237978 eV Core-core repulsion = 21362.187089 eV Total energy + Delta-G solvation = -3741.050889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.26862 -39.99824 -38.81487 -36.51099 -35.92491 -35.16617 -32.98030 -32.00797 -30.26368 -28.81192 -28.04649 -26.49667 -25.51530 -23.58188 -22.10389 -21.71463 -20.64669 -19.68336 -17.99330 -17.15380 -17.10748 -16.61468 -16.00142 -15.88288 -15.44674 -15.25917 -15.07490 -14.77621 -14.51944 -13.76642 -13.43502 -13.30842 -13.11978 -12.93688 -12.77176 -12.01098 -11.96682 -11.74009 -11.60480 -11.42002 -11.25618 -11.13755 -10.95404 -10.57475 -10.54363 -10.36173 -9.88917 -9.78169 -9.46315 -9.03534 -8.28836 -7.93597 -7.31647 -6.79380 -4.63247 0.95018 1.84756 2.80772 2.88629 2.91755 3.00805 3.04218 3.18158 3.29560 3.67927 3.84032 4.15974 4.32647 4.60614 4.66957 5.10497 5.33940 5.36086 5.40984 5.42687 5.50024 5.60300 5.79658 5.90205 5.94057 6.12603 6.15110 6.32291 6.55432 6.59251 6.76038 6.88053 6.96979 7.07066 7.10730 7.40551 7.54429 7.92579 8.29645 8.40435 8.57775 8.88572 9.35214 10.23086 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.011611 B = 0.007210 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.851273 B = 3882.615466 C = 5781.181424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.445 3.555 4 O -0.507 6.507 5 C 0.128 3.872 6 N -0.407 5.407 7 C -0.350 4.350 8 H 0.100 0.900 9 C 0.048 3.952 10 N -0.858 5.858 11 Si 0.918 3.082 12 H -0.259 1.259 13 H -0.272 1.272 14 H -0.274 1.274 15 C 0.534 3.466 16 O -0.583 6.583 17 C 0.060 3.940 18 C -0.093 4.093 19 C -0.112 4.112 20 C -0.079 4.079 21 C 0.203 3.797 22 N -0.501 5.501 23 C 0.011 3.989 24 C -0.072 4.072 25 N -0.332 5.332 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.151 0.849 30 H 0.102 0.898 31 H 0.280 0.720 32 H 0.199 0.801 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.176 0.824 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 1.156 -0.752 2.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.287 3.713 4 O -0.393 6.393 5 C 0.003 3.997 6 N -0.125 5.125 7 C -0.478 4.478 8 H 0.117 0.883 9 C -0.160 4.160 10 N -0.492 5.492 11 Si 0.742 3.258 12 H -0.183 1.183 13 H -0.197 1.197 14 H -0.199 1.199 15 C 0.323 3.677 16 O -0.468 6.468 17 C -0.046 4.046 18 C -0.114 4.114 19 C -0.136 4.136 20 C -0.100 4.100 21 C -0.039 4.039 22 N -0.222 5.222 23 C -0.142 4.142 24 C -0.206 4.206 25 N -0.003 5.003 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.168 0.832 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.215 0.785 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.193 0.807 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.695 1.756 -0.089 2.442 hybrid contribution -0.293 -0.574 -1.001 1.191 sum -1.989 1.182 -1.090 2.558 Atomic orbital electron populations 1.23111 0.77878 1.02753 1.02044 1.86541 1.22361 1.34587 1.84838 1.25266 0.93574 0.80951 0.71531 1.90597 1.67090 1.36450 1.45162 1.21131 0.84077 0.86950 1.07523 1.42588 1.55936 1.08692 1.05298 1.19643 1.25627 1.06329 0.96187 0.88303 1.25683 0.94438 0.95998 0.99897 1.69633 1.27705 1.14847 1.37041 0.85975 0.78872 0.80184 0.80750 1.18299 1.19728 1.19893 1.17607 0.80495 0.85244 0.84387 1.90703 1.54722 1.70210 1.31188 1.20192 1.02093 0.91900 0.90373 1.22921 0.94649 0.96145 0.97639 1.21169 1.00276 0.93605 0.98569 1.20300 0.96972 1.00838 0.91853 1.20909 1.03758 0.80570 0.98664 1.70559 1.14980 1.31254 1.05414 1.22397 1.02082 0.88579 1.01096 1.22874 1.04355 1.02432 0.90975 1.42678 1.31453 1.09320 1.16800 0.92486 0.92420 0.88764 0.83239 0.87973 0.90889 0.78482 0.84026 0.83769 0.80713 0.80080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.75 10.57 -39.25 -0.41 -7.16 16 3 C 0.44 9.63 7.98 36.00 0.29 9.91 16 4 O -0.51 -12.27 16.02 -18.75 -0.30 -12.57 16 5 C 0.13 2.83 5.41 -5.20 -0.03 2.80 16 6 N -0.41 -9.58 2.03 -117.55 -0.24 -9.81 16 7 C -0.35 -7.90 5.81 -15.06 -0.09 -7.99 16 8 H 0.10 2.23 6.63 -52.49 -0.35 1.88 16 9 C 0.05 1.04 4.91 -17.44 -0.09 0.95 16 10 N -0.86 -19.22 11.26 55.50 0.63 -18.59 16 11 Si 0.92 16.64 29.47 -169.99 -5.01 11.63 16 12 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 13 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 14 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 15 C 0.53 12.89 7.14 -12.79 -0.09 12.80 16 16 O -0.58 -14.95 14.93 5.16 0.08 -14.87 16 17 C 0.06 1.32 6.54 -81.87 -0.54 0.79 16 18 C -0.09 -1.77 7.92 -39.15 -0.31 -2.08 16 19 C -0.11 -1.76 10.04 -39.68 -0.40 -2.15 16 20 C -0.08 -1.29 10.09 -39.28 -0.40 -1.68 16 21 C 0.20 4.03 7.80 -156.01 -1.22 2.81 16 22 N -0.50 -9.92 11.31 -12.76 -0.14 -10.06 16 23 C 0.01 0.20 11.83 -17.94 -0.21 -0.02 16 24 C -0.07 -1.46 10.84 -16.56 -0.18 -1.64 16 25 N -0.33 -7.11 2.97 -58.75 -0.17 -7.28 16 26 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 27 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.15 3.31 5.79 -51.93 -0.30 3.01 16 30 H 0.10 2.21 7.59 -51.93 -0.39 1.82 16 31 H 0.28 5.88 8.31 -40.82 -0.34 5.54 16 32 H 0.20 3.84 4.60 -52.49 -0.24 3.60 16 33 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 35 H 0.18 2.45 8.06 -52.49 -0.42 2.02 16 36 H 0.18 3.66 7.08 -52.49 -0.37 3.28 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -29.69 315.32 -6.34 -36.03 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -3.33 Total: 11.86 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: -2.19 Total: 16.08 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.07 Total: -45.75 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.64 Total: -34.60 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.01 Total: 11.63 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.69 -6.34 -36.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770084723.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.221 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds