Wall clock time and date at job start Tue Mar 31 2020 03:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86794 * 120.00087 * 2 1 4 4 H 1.48502 * 109.47193 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47823 * 119.99728 * 3 2 1 6 6 H 1.48499 * 109.47033 * 240.00126 * 3 2 1 7 7 C 1.39010 * 119.99788 * 179.72209 * 2 1 3 8 8 H 1.07996 * 119.99743 * 161.75163 * 7 2 1 9 9 N 1.36891 * 120.00286 * 341.74179 * 7 2 1 10 10 C 1.38204 * 125.61960 * 137.62480 * 9 7 2 11 11 C 1.46894 * 125.43562 * 0.02562 * 10 9 7 12 12 O 1.21674 * 119.99616 * 173.37471 * 11 10 9 13 13 N 1.34773 * 119.99875 * 353.38048 * 11 10 9 14 14 O 1.41601 * 119.99482 * 184.70578 * 13 11 10 15 15 C 1.42903 * 113.99390 * 179.97438 * 14 13 11 16 16 C 1.50704 * 109.46760 * 180.02562 * 15 14 13 17 17 N 1.34778 * 119.99653 * 180.02562 * 16 15 14 18 18 O 1.21282 * 120.00533 * 359.97438 * 16 15 14 19 19 C 1.36121 * 109.12913 * 179.82973 * 10 9 7 20 20 C 1.41699 * 107.74581 * 0.43717 * 19 10 9 21 21 C 1.40029 * 133.34995 * 179.75659 * 20 19 10 22 22 C 1.36580 * 119.82854 * 179.97438 * 21 20 19 23 23 C 1.38854 * 120.60013 * 359.97438 * 22 21 20 24 24 C 1.37841 * 120.63367 * 0.02562 * 23 22 21 25 25 C 1.37839 * 125.62202 * 317.94286 * 9 7 2 26 26 H 0.96998 * 119.99671 * 173.96927 * 1 2 3 27 27 H 0.96993 * 120.00235 * 4.70816 * 13 11 10 28 28 H 1.08994 * 109.47604 * 300.00148 * 15 14 13 29 29 H 1.09005 * 109.47268 * 60.00891 * 15 14 13 30 30 H 0.97001 * 120.00552 * 359.97438 * 17 16 15 31 31 H 0.97005 * 119.99445 * 180.02562 * 17 16 15 32 32 H 1.08002 * 126.12804 * 180.16585 * 19 10 9 33 33 H 1.08000 * 120.08383 * 359.97080 * 21 20 19 34 34 H 1.08002 * 119.69496 * 180.02562 * 22 21 20 35 35 H 1.07996 * 119.68315 * 180.02562 * 23 22 21 36 36 H 1.08003 * 120.09588 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 1.2825 2.7464 -0.0006 5 1 3.1013 1.6965 1.2124 6 1 3.1012 1.6963 -1.2125 7 6 2.0085 -1.2039 0.0058 8 1 3.0478 -1.2288 -0.2869 9 7 1.3758 -2.3577 0.3829 10 6 1.4989 -3.5843 -0.2419 11 6 2.3322 -3.8603 -1.4197 12 8 2.4628 -5.0025 -1.8184 13 7 2.9522 -2.8485 -2.0586 14 8 3.6735 -3.1004 -3.2508 15 6 4.2786 -1.9378 -3.8205 16 6 5.0152 -2.3202 -5.0784 17 7 5.6675 -1.3795 -5.7897 18 8 5.0219 -3.4747 -5.4502 19 6 0.7283 -4.4969 0.4109 20 6 0.0835 -3.8301 1.4822 21 6 -0.8143 -4.2469 2.4727 22 6 -1.2738 -3.3497 3.3942 23 6 -0.8584 -2.0252 3.3593 24 6 0.0246 -1.5912 2.3939 25 6 0.5060 -2.4864 1.4444 26 1 -0.4849 -0.8354 -0.0883 27 1 2.9043 -1.9478 -1.7018 28 1 3.5066 -1.2067 -4.0601 29 1 4.9792 -1.5056 -3.1060 30 1 5.6626 -0.4562 -5.4923 31 1 6.1414 -1.6256 -6.5996 32 1 0.6233 -5.5409 0.1553 33 1 -1.1425 -5.2752 2.5078 34 1 -1.9658 -3.6736 4.1575 35 1 -1.2309 -1.3283 4.0955 36 1 0.3416 -0.5589 2.3746 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772931453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:45 Heat of formation + Delta-G solvation = -4.838178 kcal Electronic energy + Delta-G solvation = -24250.478112 eV Core-core repulsion = 20509.512773 eV Total energy + Delta-G solvation = -3740.965338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80390 -39.67329 -38.49256 -36.61121 -36.18306 -34.00051 -33.93504 -31.97586 -30.73242 -29.18301 -28.34136 -27.41612 -24.97454 -23.23356 -21.26662 -21.13433 -20.45712 -19.62387 -18.82624 -17.87237 -17.61359 -16.65893 -16.27851 -16.16997 -15.84736 -15.08818 -14.78171 -14.59162 -14.32980 -14.09206 -13.91883 -13.39934 -13.30002 -13.11311 -12.97595 -12.54374 -12.23694 -11.91048 -11.35371 -11.08842 -11.00632 -10.71330 -10.60396 -10.49491 -10.21320 -10.02193 -9.97264 -9.58293 -9.36300 -8.95028 -8.50981 -7.70459 -7.19698 -6.90569 -4.90393 1.59209 2.00356 2.38579 2.50151 2.85379 2.92483 2.96383 3.12514 3.43444 3.65307 4.06594 4.17896 4.49058 4.59768 4.77077 4.90823 4.95057 4.98886 5.41505 5.63067 5.74269 5.92558 6.19380 6.28406 6.41375 6.48849 6.62000 6.74965 6.86354 6.95513 7.01444 7.12643 7.26174 7.36647 7.39837 7.61413 7.65881 7.88099 8.00625 8.03663 8.46933 8.82354 8.91738 9.89476 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015428 B = 0.005003 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.465000 B = 5595.829130 C = 7267.282915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.029 3.971 3 Si 1.076 2.924 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.456 4.456 8 H 0.101 0.899 9 N -0.270 5.270 10 C -0.011 4.011 11 C 0.607 3.393 12 O -0.532 6.532 13 N -0.593 5.593 14 O -0.130 6.130 15 C 0.011 3.989 16 C 0.528 3.472 17 N -0.851 5.851 18 O -0.516 6.516 19 C -0.154 4.154 20 C -0.128 4.128 21 C -0.078 4.078 22 C -0.159 4.159 23 C -0.131 4.131 24 C -0.083 4.083 25 C 0.075 3.925 26 H 0.293 0.707 27 H 0.422 0.578 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.403 0.597 31 H 0.407 0.593 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 5.898 -2.215 8.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.118 0.882 9 N 0.065 4.935 10 C -0.126 4.126 11 C 0.397 3.603 12 O -0.407 6.407 13 N -0.306 5.306 14 O -0.132 6.132 15 C -0.071 4.071 16 C 0.310 3.690 17 N -0.418 5.418 18 O -0.390 6.390 19 C -0.182 4.182 20 C -0.133 4.133 21 C -0.097 4.097 22 C -0.178 4.178 23 C -0.151 4.151 24 C -0.103 4.103 25 C -0.040 4.040 26 H 0.106 0.894 27 H 0.275 0.725 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.232 0.768 31 H 0.239 0.761 32 H 0.156 0.844 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.295 6.038 -2.787 8.500 hybrid contribution 0.483 -0.478 -0.268 0.730 sum 5.778 5.560 -3.055 8.581 Atomic orbital electron populations 1.70594 1.06971 1.33465 1.32802 1.26902 0.96185 1.02894 0.92924 0.83405 0.75287 0.73579 0.77925 1.19286 1.19823 1.20201 1.20427 0.97229 0.85944 1.54708 0.88226 1.40129 1.30308 1.06157 1.16947 1.19873 1.06458 0.88599 0.97647 1.17195 0.77893 0.83851 0.81375 1.90783 1.62456 1.20818 1.66647 1.48694 1.51342 1.13577 1.17011 1.90625 1.67812 1.24789 1.29970 1.22592 0.98558 0.91314 0.94609 1.19928 0.78875 0.85684 0.84547 1.43622 1.56566 1.11700 1.29935 1.90833 1.59798 1.18923 1.69434 1.20426 1.01283 0.98525 0.97942 1.17992 1.02907 0.93187 0.99217 1.20147 0.96823 0.98533 0.94183 1.20359 1.03136 0.93872 1.00463 1.20635 0.99493 0.95748 0.99257 1.20196 0.97952 0.98427 0.93678 1.18402 0.99199 0.94664 0.91707 0.89423 0.72490 0.88802 0.88986 0.76807 0.76110 0.84357 0.87237 0.87405 0.87101 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.57 12.01 55.50 0.67 -18.90 16 2 C 0.03 0.62 4.40 -17.47 -0.08 0.55 16 3 Si 1.08 18.35 29.96 -169.99 -5.09 13.26 16 4 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 6 H -0.28 -4.16 7.11 56.52 0.40 -3.76 16 7 C -0.46 -10.25 7.78 -15.01 -0.12 -10.37 16 8 H 0.10 2.07 6.29 -52.49 -0.33 1.74 16 9 N -0.27 -6.43 2.57 -56.08 -0.14 -6.57 16 10 C -0.01 -0.27 6.77 -82.25 -0.56 -0.82 16 11 C 0.61 14.46 7.91 -12.76 -0.10 14.36 16 12 O -0.53 -13.94 17.26 -12.87 -0.22 -14.17 16 13 N -0.59 -12.39 6.32 30.31 0.19 -12.20 16 14 O -0.13 -2.59 10.64 -40.32 -0.43 -3.02 16 15 C 0.01 0.14 6.71 36.01 0.24 0.38 16 16 C 0.53 7.02 8.18 -10.98 -0.09 6.93 16 17 N -0.85 -6.40 8.87 31.22 0.28 -6.12 16 18 O -0.52 -9.70 17.34 -14.35 -0.25 -9.95 16 19 C -0.15 -3.49 10.55 -39.02 -0.41 -3.90 16 20 C -0.13 -2.85 6.16 -106.89 -0.66 -3.51 16 21 C -0.08 -1.49 10.06 -39.51 -0.40 -1.89 16 22 C -0.16 -2.83 9.97 -39.95 -0.40 -3.23 16 23 C -0.13 -2.46 10.02 -39.50 -0.40 -2.86 16 24 C -0.08 -1.80 8.57 -39.41 -0.34 -2.14 16 25 C 0.07 1.75 5.42 -83.84 -0.45 1.29 16 26 H 0.29 7.57 6.93 -40.82 -0.28 7.29 16 27 H 0.42 8.19 4.32 -40.82 -0.18 8.01 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.40 1.66 8.83 -40.82 -0.36 1.30 16 31 H 0.41 2.55 8.93 -40.82 -0.36 2.19 16 32 H 0.14 2.89 8.06 -52.49 -0.42 2.47 16 33 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.12 2.66 6.77 -52.48 -0.36 2.30 16 LS Contribution 319.37 15.07 4.81 4.81 Total: -1.00 -32.81 319.37 -7.14 -39.95 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -3.20 Total: 18.10 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -3.75 Total: -5.20 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.99 Total: -43.79 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.90 Total: -27.13 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.09 Total: 13.26 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.81 -7.14 -39.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772931453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.112 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds