Wall clock time and date at job start Tue Mar 31 2020 04:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35968 * 117.00413 * 2 1 4 4 C 1.38153 * 120.00938 * 359.97438 * 3 2 1 5 5 C 1.39751 * 119.86404 * 180.02562 * 4 3 2 6 6 C 1.43205 * 120.05063 * 180.02562 * 5 4 3 7 7 N 5.84031 * 81.25324 * 359.97438 * 2 1 3 8 8 C 1.39764 * 119.88956 * 0.02562 * 5 4 3 9 9 C 1.37739 * 120.02614 * 359.71848 * 8 5 4 10 10 C 1.39020 * 120.13734 * 0.55264 * 9 8 5 11 11 N 1.39501 * 119.94853 * 179.72478 * 10 9 8 12 12 C 1.34773 * 119.99793 * 335.11349 * 11 10 9 13 13 O 1.21371 * 120.00574 * 354.47905 * 12 11 10 14 14 C 1.49339 * 119.99710 * 174.47680 * 12 11 10 15 15 O 1.21361 * 120.00194 * 0.02562 * 14 12 11 16 16 N 1.34777 * 120.00241 * 179.73000 * 14 12 11 17 17 C 1.46497 * 120.00401 * 180.27403 * 16 14 12 18 18 C 1.50703 * 109.47055 * 179.97438 * 17 16 14 19 19 H 1.08003 * 119.99953 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00044 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99694 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00137 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46927 * 90.00395 * 22 20 18 24 24 H 1.48501 * 109.47065 * 209.99921 * 22 20 18 25 25 H 1.48499 * 109.47101 * 329.99929 * 22 20 18 26 26 H 1.09000 * 109.47518 * 300.00338 * 1 2 3 27 27 H 1.09002 * 109.47258 * 60.00071 * 1 2 3 28 28 H 1.09001 * 109.47706 * 179.97438 * 1 2 3 29 29 H 1.07994 * 120.06931 * 0.02562 * 4 3 2 30 30 H 1.08008 * 119.98342 * 179.97438 * 8 5 4 31 31 H 1.08005 * 119.93532 * 180.29642 * 9 8 5 32 32 H 0.96999 * 120.00101 * 155.12147 * 11 10 9 33 33 H 0.97009 * 119.99681 * 0.27493 * 16 14 12 34 34 H 1.08995 * 109.47429 * 299.99930 * 17 16 14 35 35 H 1.08998 * 109.46884 * 60.00057 * 17 16 14 36 36 H 0.97001 * 119.99542 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2941 2.3703 -0.0005 5 6 1.9318 3.6138 -0.0011 6 6 1.1561 4.8175 -0.0011 7 7 0.5408 5.7724 -0.0026 8 6 3.3279 3.6806 -0.0016 9 6 4.0733 2.5224 0.0042 10 6 3.4401 1.2848 -0.0009 11 7 4.1990 0.1142 -0.0007 12 6 5.4558 0.1260 -0.4872 13 8 5.8925 1.1271 -1.0164 14 6 6.3112 -1.0930 -0.3752 15 8 5.8745 -2.0943 0.1536 16 7 7.5662 -1.0832 -0.8665 17 6 8.4033 -2.2809 -0.7619 18 6 9.7490 -2.0091 -1.3834 19 1 9.9598 -1.0408 -1.8128 20 6 10.7115 -2.9961 -1.4027 21 7 10.4549 -4.1751 -0.8793 22 14 12.3799 -2.6590 -2.1723 23 1 13.3029 -2.1250 -1.1388 24 1 12.9336 -3.9207 -2.7261 25 1 12.2294 -1.6633 -3.2638 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2156 2.3153 -0.0005 30 1 3.8223 4.6409 -0.0025 31 1 5.1520 2.5758 0.0087 32 1 3.8221 -0.7081 0.3494 33 1 7.9152 -0.2830 -1.2894 34 1 8.5337 -2.5425 0.2881 35 1 7.9221 -3.1072 -1.2852 36 1 11.1322 -4.8694 -0.8925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787593849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:32 Heat of formation + Delta-G solvation = -43.877825 kcal Electronic energy + Delta-G solvation = -22956.172493 eV Core-core repulsion = 19213.514269 eV Total energy + Delta-G solvation = -3742.658224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33416 -40.02735 -38.39096 -37.94226 -36.58171 -35.28310 -34.27350 -32.42116 -30.91500 -30.43324 -27.89359 -27.72999 -25.43101 -23.48350 -22.94300 -21.89245 -20.06283 -19.79302 -18.85381 -17.75850 -17.09571 -16.66785 -16.34359 -16.01906 -15.72604 -15.62983 -15.07458 -14.56593 -14.45214 -14.30349 -14.21411 -13.97462 -13.79513 -13.19430 -13.08827 -12.86075 -12.77896 -12.11508 -12.06336 -11.96908 -11.91357 -11.47545 -11.25694 -11.03598 -10.94656 -10.76711 -10.35817 -9.52176 -9.26527 -9.04219 -8.87098 -8.21437 -8.14117 -6.25281 -4.32827 0.27701 0.95602 1.63354 2.33059 2.43476 2.63406 2.80379 3.21640 3.28238 3.31064 3.43465 3.52273 3.61650 3.91869 4.28481 4.32876 4.59766 4.63513 4.78276 4.83053 4.94465 5.03116 5.11677 5.14426 5.35948 5.46247 5.66721 5.88592 6.00689 6.33698 6.81345 6.92758 7.02708 7.11785 7.15584 7.31886 7.49646 7.70738 7.82966 8.30695 8.49943 8.78108 9.33661 10.84708 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.026592 B = 0.002671 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.705586 B =10482.348307 C =11416.156525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.098 3.902 4 C -0.140 4.140 5 C -0.019 4.019 6 C 0.261 3.739 7 N -0.422 5.422 8 C -0.075 4.075 9 C -0.103 4.103 10 C 0.162 3.838 11 N -0.639 5.639 12 C 0.510 3.490 13 O -0.500 6.500 14 C 0.491 3.509 15 O -0.532 6.532 16 N -0.669 5.669 17 C 0.246 3.754 18 C -0.547 4.547 19 H 0.067 0.933 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.907 3.093 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.271 1.271 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.166 0.834 32 H 0.430 0.570 33 H 0.405 0.595 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.200 10.694 2.546 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.050 3.950 4 C -0.162 4.162 5 C -0.024 4.024 6 C -0.055 4.055 7 N -0.097 5.097 8 C -0.097 4.097 9 C -0.123 4.123 10 C 0.064 3.936 11 N -0.284 5.284 12 C 0.294 3.706 13 O -0.374 6.374 14 C 0.270 3.730 15 O -0.411 6.411 16 N -0.318 5.318 17 C 0.126 3.874 18 C -0.585 4.585 19 H 0.085 0.915 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.734 3.266 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.183 0.817 32 H 0.270 0.730 33 H 0.240 0.760 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.871 11.682 2.567 22.342 hybrid contribution 0.778 -0.224 -0.425 0.914 sum -18.093 11.458 2.142 21.523 Atomic orbital electron populations 1.23135 0.77606 1.04584 1.01505 1.86092 1.21951 1.25469 1.88972 1.18395 0.90071 0.85116 1.01410 1.20935 1.00210 0.89991 1.05031 1.15705 0.91723 0.86702 1.08243 1.25629 0.93332 0.92919 0.93572 1.81261 1.08739 1.10590 1.09135 1.21011 0.90996 0.99269 0.98402 1.21313 1.02521 0.88909 0.99549 1.17392 0.86986 0.87448 1.01746 1.43098 1.13564 1.12040 1.59740 1.20983 0.82127 0.89823 0.77692 1.90694 1.72441 1.34015 1.40237 1.19585 0.84000 0.87245 0.82213 1.90756 1.72898 1.33272 1.44164 1.46432 1.11766 1.18988 1.54616 1.19368 0.88391 0.81238 0.98369 1.21193 0.97414 0.99711 1.40219 0.91513 1.24941 0.99180 0.94689 0.95070 1.69965 1.34914 1.03549 1.43751 0.86360 0.82966 0.77865 0.79449 1.20361 1.20962 1.19610 0.92356 0.92369 0.87704 0.84066 0.84206 0.81681 0.73048 0.76024 0.94625 0.94628 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.74 9.89 -19.64 -0.19 -2.94 16 3 C 0.10 0.91 6.70 -39.11 -0.26 0.65 16 4 C -0.14 -1.08 8.74 -39.05 -0.34 -1.42 16 5 C -0.02 -0.16 5.74 -106.83 -0.61 -0.77 16 6 C 0.26 2.51 15.32 -22.47 -0.34 2.17 16 7 N -0.42 -4.98 18.54 41.83 0.78 -4.21 16 8 C -0.08 -0.63 9.74 -39.19 -0.38 -1.01 16 9 C -0.10 -1.06 8.69 -39.47 -0.34 -1.40 16 10 C 0.16 1.78 6.44 -83.58 -0.54 1.25 16 11 N -0.64 -8.03 5.25 -10.18 -0.05 -8.08 16 12 C 0.51 7.74 7.68 -11.64 -0.09 7.65 16 13 O -0.50 -7.84 13.62 5.48 0.07 -7.77 16 14 C 0.49 9.16 7.89 -11.64 -0.09 9.07 16 15 O -0.53 -11.15 16.48 5.49 0.09 -11.06 16 16 N -0.67 -13.55 5.54 -61.95 -0.34 -13.89 16 17 C 0.25 6.13 5.43 -5.19 -0.03 6.10 16 18 C -0.55 -14.26 9.28 -34.44 -0.32 -14.58 16 19 H 0.07 1.64 7.60 -52.48 -0.40 1.25 16 20 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.88 -24.99 13.29 55.43 0.74 -24.25 16 22 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 27 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.14 0.77 6.28 -52.49 -0.33 0.44 16 30 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.17 1.86 5.77 -52.48 -0.30 1.56 16 32 H 0.43 5.15 7.80 -40.82 -0.32 4.83 16 33 H 0.40 7.50 7.79 -40.82 -0.32 7.18 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -30.81 331.73 -4.68 -35.49 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.29 Total: 5.99 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -2.46 Total: 10.47 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 1.12 Total: -50.43 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.03 Total: -21.77 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.81 -4.68 -35.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787593849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.389 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds