Wall clock time and date at job start Tue Mar 31 2020 03:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38401 * 120.40270 * 2 1 4 4 C 1.39924 * 118.35802 * 180.26074 * 3 2 1 5 5 C 1.43198 * 120.46821 * 179.71053 * 4 3 2 6 6 N 4.80156 * 136.43045 * 359.70155 * 2 1 3 7 7 C 1.39921 * 119.06516 * 359.72950 * 4 3 2 8 8 N 1.31318 * 120.70761 * 359.97438 * 7 4 3 9 9 C 1.32818 * 121.80215 * 0.02562 * 8 7 4 10 10 C 1.48109 * 119.56634 * 179.97438 * 9 8 7 11 11 O 1.21429 * 120.00176 * 174.46663 * 10 9 8 12 12 O 1.34679 * 120.00438 * 354.47260 * 10 9 8 13 13 C 1.45193 * 117.00597 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47579 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00072 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99653 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.46848 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00023 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99589 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00288 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99627 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47387 * 89.99211 * 22 20 18 24 24 H 1.48500 * 109.47137 * 209.99308 * 22 20 18 25 25 H 1.48501 * 109.47110 * 329.99395 * 22 20 18 26 26 H 1.09003 * 109.47180 * 263.50505 * 1 2 3 27 27 H 1.08998 * 109.47096 * 23.50460 * 1 2 3 28 28 H 1.09003 * 109.47290 * 143.50486 * 1 2 3 29 29 H 1.08000 * 120.81959 * 359.97094 * 3 2 1 30 30 H 1.08000 * 119.64613 * 180.02562 * 7 4 3 31 31 H 1.09003 * 109.47312 * 300.00068 * 13 12 10 32 32 H 1.08999 * 109.47024 * 59.99326 * 13 12 10 33 33 H 0.96998 * 120.00192 * 359.97438 * 16 14 13 34 34 H 1.09001 * 109.47103 * 299.99322 * 17 16 14 35 35 H 1.09004 * 109.47537 * 59.99681 * 17 16 14 36 36 H 0.96996 * 119.99755 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2074 1.1937 0.0000 4 6 3.6058 1.1438 -0.0056 5 6 4.3754 2.3513 -0.0121 6 7 4.9859 3.3094 -0.0172 7 6 4.2414 -0.1027 -0.0052 8 7 3.5403 -1.2130 0.0009 9 6 2.2122 -1.2021 0.0063 10 6 1.4709 -2.4843 0.0124 11 8 0.2612 -2.4858 0.1188 12 8 2.1383 -3.6487 -0.0998 13 6 1.3472 -4.8661 -0.0858 14 6 2.2583 -6.0589 -0.2202 15 8 3.4564 -5.8988 -0.3187 16 7 1.7415 -7.3037 -0.2320 17 6 2.6273 -8.4633 -0.3622 18 6 1.8061 -9.7268 -0.3477 19 1 0.7319 -9.6716 -0.2508 20 6 2.4264 -10.9533 -0.4571 21 7 3.7345 -11.0206 -0.5746 22 14 1.4085 -12.5196 -0.4384 23 1 1.0166 -12.8719 -1.8268 24 1 2.2110 -13.6245 0.1449 25 1 0.1886 -12.3074 0.3814 26 1 -0.3634 -0.1162 1.0211 27 1 -0.3633 0.9424 -0.4098 28 1 -0.3634 -0.8262 -0.6112 29 1 1.6875 2.1403 -0.0005 30 1 5.3203 -0.1522 -0.0091 31 1 0.7989 -4.9323 0.8540 32 1 0.6425 -4.8511 -0.9172 33 1 0.7832 -7.4318 -0.1536 34 1 3.1766 -8.3973 -1.3014 35 1 3.3311 -8.4782 0.4701 36 1 4.1707 -11.8834 -0.6520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815337307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:31 Heat of formation + Delta-G solvation = -48.993947 kcal Electronic energy + Delta-G solvation = -22522.999897 eV Core-core repulsion = 18780.119821 eV Total energy + Delta-G solvation = -3742.880076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50291 -40.16606 -38.70849 -37.20456 -36.64990 -34.27934 -34.18609 -33.01976 -32.41181 -29.48187 -28.13353 -26.85050 -25.90720 -23.42951 -22.77968 -21.86111 -19.96027 -19.14377 -18.74875 -17.83741 -17.12558 -16.89801 -16.73593 -15.66836 -15.34795 -15.15911 -14.82582 -14.58728 -14.38176 -14.18720 -13.94888 -13.87554 -13.50699 -13.22637 -13.11873 -13.03375 -12.85233 -12.73198 -12.48444 -11.99867 -11.77893 -11.02127 -10.93527 -10.80797 -10.70653 -10.43094 -10.34960 -10.14684 -9.65870 -9.44402 -9.17931 -8.78550 -7.98868 -6.19851 -4.27346 -0.46942 0.51094 1.73856 2.01769 2.10864 2.55803 3.07608 3.17337 3.22806 3.25890 3.29034 3.31268 3.57465 3.90910 4.01709 4.12470 4.25125 4.33288 4.47851 4.86403 4.94344 5.07779 5.15794 5.18673 5.19169 5.28959 5.32038 5.47185 5.63261 5.81060 6.19595 6.79801 7.04134 7.22749 7.30364 7.45977 7.47453 7.61247 7.91793 8.49507 8.71027 8.96397 9.39032 10.90227 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.033617 B = 0.002273 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.715619 B =12313.021380 C =13116.627537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.068 4.068 3 C -0.037 4.037 4 C -0.046 4.046 5 C 0.254 3.746 6 N -0.395 5.395 7 C 0.145 3.855 8 N -0.418 5.418 9 C 0.118 3.882 10 C 0.519 3.481 11 O -0.490 6.490 12 O -0.301 6.301 13 C 0.046 3.954 14 C 0.499 3.501 15 O -0.529 6.529 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.157 0.843 30 H 0.179 0.821 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.393 0.607 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 24.021 1.423 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.070 4.070 3 C -0.066 4.066 4 C -0.052 4.052 5 C -0.063 4.063 6 N -0.070 5.070 7 C -0.019 4.019 8 N -0.127 5.127 9 C -0.018 4.018 10 C 0.361 3.639 11 O -0.378 6.378 12 O -0.214 6.214 13 C -0.032 4.032 14 C 0.281 3.719 15 O -0.405 6.405 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.521 5.521 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.175 0.825 30 H 0.196 0.804 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.225 0.775 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.509 24.551 1.354 25.198 hybrid contribution -1.591 -0.604 0.063 1.703 sum -7.100 23.947 1.416 25.017 Atomic orbital electron populations 1.21173 0.87792 1.04269 1.04663 1.20828 0.98945 0.91123 0.96105 1.21579 0.91559 0.99014 0.94402 1.17270 0.92692 0.89361 1.05867 1.25254 0.93834 0.92748 0.94416 1.81321 1.07916 1.10253 1.07471 1.23113 1.01169 0.84819 0.92817 1.67860 1.06361 1.30329 1.08102 1.20155 0.89977 0.90817 1.00891 1.20712 0.85324 0.84284 0.73539 1.90824 1.14082 1.87494 1.45395 1.86741 1.39583 1.13350 1.81706 1.22990 0.93701 0.81735 1.04725 1.19833 0.88872 0.84080 0.79088 1.90737 1.15131 1.85618 1.49045 1.46357 1.11652 1.05720 1.72011 1.19178 0.89571 0.80270 0.97866 1.21207 0.93700 0.90505 1.52958 0.91759 1.24957 0.95056 0.99369 0.94644 1.69972 1.08244 1.25768 1.48146 0.86390 0.79865 0.82180 0.78321 1.20445 1.20993 1.19728 0.89479 0.91196 0.87950 0.82549 0.80439 0.88203 0.88210 0.77455 0.95234 0.95231 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 8.72 36.01 0.31 -0.41 16 2 C -0.07 -0.48 5.92 -104.14 -0.62 -1.10 16 3 C -0.04 -0.19 9.55 -38.89 -0.37 -0.56 16 4 C -0.05 -0.29 5.75 -106.71 -0.61 -0.90 16 5 C 0.25 1.84 15.36 -22.47 -0.35 1.50 16 6 N -0.39 -3.83 18.54 41.84 0.78 -3.05 16 7 C 0.14 1.09 10.92 -17.14 -0.19 0.90 16 8 N -0.42 -4.60 10.10 -9.48 -0.10 -4.69 16 9 C 0.12 1.23 6.75 -82.97 -0.56 0.68 16 10 C 0.52 6.50 7.89 34.78 0.27 6.78 16 11 O -0.49 -5.96 13.07 -19.21 -0.25 -6.21 16 12 O -0.30 -4.63 9.57 -47.11 -0.45 -5.08 16 13 C 0.05 0.65 5.95 36.00 0.21 0.87 16 14 C 0.50 9.72 7.91 -10.99 -0.09 9.63 16 15 O -0.53 -12.81 16.50 -14.10 -0.23 -13.04 16 16 N -0.71 -14.21 5.55 -61.47 -0.34 -14.55 16 17 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 18 C -0.55 -14.41 9.28 -34.44 -0.32 -14.73 16 19 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.88 -25.63 13.29 55.43 0.74 -24.89 16 22 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.24 8.05 -51.93 -0.42 -0.17 16 28 H 0.10 0.79 5.84 -51.93 -0.30 0.49 16 29 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 30 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.39 6.53 8.32 -40.82 -0.34 6.19 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -34.44 337.29 -5.77 -40.22 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -3.55 Total: 0.04 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -2.42 Total: 10.73 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 1.08 Total: -47.19 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.93 Total: -24.33 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.44 -5.77 -40.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815337307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.776 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds