Wall clock time and date at job start Tue Mar 31 2020 03:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38401 * 120.40270 * 2 1 4 4 C 1.39924 * 118.35802 * 180.26074 * 3 2 1 5 5 C 1.43198 * 120.46821 * 179.71053 * 4 3 2 6 6 N 4.80156 * 136.43045 * 359.70155 * 2 1 3 7 7 C 1.39921 * 119.06516 * 359.72950 * 4 3 2 8 8 N 1.31318 * 120.70761 * 359.97438 * 7 4 3 9 9 C 1.32818 * 121.80215 * 0.02562 * 8 7 4 10 10 C 1.48109 * 119.56634 * 179.97438 * 9 8 7 11 11 O 1.21429 * 120.00176 * 174.46663 * 10 9 8 12 12 O 1.34679 * 120.00438 * 354.47260 * 10 9 8 13 13 C 1.45193 * 117.00597 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47579 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00072 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99653 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.46848 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00023 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99589 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00288 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99627 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47387 * 89.99211 * 22 20 18 24 24 H 1.48500 * 109.47137 * 209.99308 * 22 20 18 25 25 H 1.48501 * 109.47110 * 329.99395 * 22 20 18 26 26 H 1.09003 * 109.47180 * 263.50505 * 1 2 3 27 27 H 1.08998 * 109.47096 * 23.50460 * 1 2 3 28 28 H 1.09003 * 109.47290 * 143.50486 * 1 2 3 29 29 H 1.08000 * 120.81959 * 359.97094 * 3 2 1 30 30 H 1.08000 * 119.64613 * 180.02562 * 7 4 3 31 31 H 1.09003 * 109.47312 * 300.00068 * 13 12 10 32 32 H 1.08999 * 109.47024 * 59.99326 * 13 12 10 33 33 H 0.96998 * 120.00192 * 359.97438 * 16 14 13 34 34 H 1.09001 * 109.47103 * 299.99322 * 17 16 14 35 35 H 1.09004 * 109.47537 * 59.99681 * 17 16 14 36 36 H 0.96996 * 119.99755 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2074 1.1937 0.0000 4 6 3.6058 1.1438 -0.0056 5 6 4.3754 2.3513 -0.0121 6 7 4.9859 3.3094 -0.0172 7 6 4.2414 -0.1027 -0.0052 8 7 3.5403 -1.2130 0.0009 9 6 2.2122 -1.2021 0.0063 10 6 1.4709 -2.4843 0.0124 11 8 0.2612 -2.4858 0.1188 12 8 2.1383 -3.6487 -0.0998 13 6 1.3472 -4.8661 -0.0858 14 6 2.2583 -6.0589 -0.2202 15 8 3.4564 -5.8988 -0.3187 16 7 1.7415 -7.3037 -0.2320 17 6 2.6273 -8.4633 -0.3622 18 6 1.8061 -9.7268 -0.3477 19 1 0.7319 -9.6716 -0.2508 20 6 2.4264 -10.9533 -0.4571 21 7 3.7345 -11.0206 -0.5746 22 14 1.4085 -12.5196 -0.4384 23 1 1.0166 -12.8719 -1.8268 24 1 2.2110 -13.6245 0.1449 25 1 0.1886 -12.3074 0.3814 26 1 -0.3634 -0.1162 1.0211 27 1 -0.3633 0.9424 -0.4098 28 1 -0.3634 -0.8262 -0.6112 29 1 1.6875 2.1403 -0.0005 30 1 5.3203 -0.1522 -0.0091 31 1 0.7989 -4.9323 0.8540 32 1 0.6425 -4.8511 -0.9172 33 1 0.7832 -7.4318 -0.1536 34 1 3.1766 -8.3973 -1.3014 35 1 3.3311 -8.4782 0.4701 36 1 4.1707 -11.8834 -0.6520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815337307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:30 Heat of formation + Delta-G solvation = -73.006567 kcal Electronic energy + Delta-G solvation = -22524.041163 eV Core-core repulsion = 18780.119821 eV Total energy + Delta-G solvation = -3743.921341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.26248 -41.12101 -40.23042 -37.93236 -37.65094 -36.16032 -34.80498 -34.39629 -33.64432 -30.88875 -29.04550 -28.24594 -26.73582 -24.63894 -23.99180 -22.86047 -21.61913 -19.80894 -19.62851 -19.10331 -18.30849 -17.93757 -17.71388 -17.37125 -16.89046 -16.38105 -16.13664 -15.65744 -15.41048 -14.95187 -14.75668 -14.64047 -14.42738 -14.22424 -14.12321 -14.07720 -13.78535 -13.70732 -13.59463 -13.42576 -13.29870 -12.91909 -12.70329 -12.21420 -11.89270 -11.51208 -11.47793 -10.99210 -10.91709 -10.80117 -10.74760 -10.25931 -9.90105 -8.27911 -6.44522 -1.10767 -0.00442 0.94685 1.12415 1.42454 1.45862 1.47699 1.59054 1.59751 1.87890 2.30526 2.43590 2.56677 2.64451 3.04154 3.07305 3.50642 3.53649 3.61401 3.74146 3.83339 4.06428 4.10161 4.35031 4.45314 4.75207 4.83788 4.99926 5.05381 5.10951 5.14139 5.23993 5.44467 5.52600 5.65649 5.83960 6.19582 6.31609 6.64668 6.66438 6.81848 7.22982 7.39764 8.84188 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.033617 B = 0.002273 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.715619 B =12313.021380 C =13116.627537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.058 4.058 3 C -0.015 4.015 4 C -0.035 4.035 5 C 0.283 3.717 6 N -0.434 5.434 7 C 0.144 3.856 8 N -0.460 5.460 9 C 0.092 3.908 10 C 0.517 3.483 11 O -0.489 6.489 12 O -0.332 6.332 13 C 0.059 3.941 14 C 0.497 3.503 15 O -0.583 6.583 16 N -0.698 5.698 17 C 0.266 3.734 18 C -0.556 4.556 19 H 0.088 0.912 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.986 3.014 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.254 1.254 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.196 0.804 30 H 0.193 0.807 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.413 0.587 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.487 25.497 1.655 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.060 4.060 3 C -0.043 4.043 4 C -0.041 4.041 5 C -0.033 4.033 6 N -0.109 5.109 7 C -0.020 4.020 8 N -0.170 5.170 9 C -0.044 4.044 10 C 0.360 3.640 11 O -0.377 6.377 12 O -0.246 6.246 13 C -0.018 4.018 14 C 0.283 3.717 15 O -0.463 6.463 16 N -0.350 5.350 17 C 0.144 3.856 18 C -0.594 4.594 19 H 0.106 0.894 20 C -0.197 4.197 21 N -0.569 5.569 22 Si 0.809 3.191 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.178 1.178 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.214 0.786 30 H 0.210 0.790 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.250 0.750 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.526 26.058 1.593 27.464 hybrid contribution -0.639 -0.941 -0.011 1.138 sum -9.165 25.117 1.582 26.784 Atomic orbital electron populations 1.21194 0.86640 1.05259 1.04634 1.20979 0.99615 0.90411 0.95034 1.21965 0.90901 0.99767 0.91670 1.17184 0.93155 0.88267 1.05491 1.25144 0.92866 0.92161 0.93136 1.81366 1.09052 1.11603 1.08903 1.23352 1.01842 0.84621 0.92232 1.67762 1.07132 1.32129 1.09962 1.20136 0.90166 0.90737 1.03315 1.21110 0.85587 0.84054 0.73200 1.90816 1.13908 1.87465 1.45513 1.86724 1.40970 1.14342 1.82554 1.22849 0.91989 0.79427 1.07517 1.20741 0.88875 0.85114 0.76960 1.90710 1.17971 1.86489 1.51171 1.46019 1.12049 1.04896 1.72067 1.18616 0.89804 0.82821 0.94365 1.21622 0.94806 0.90570 1.52355 0.89439 1.26074 0.96186 1.03523 0.93915 1.70138 1.10527 1.26826 1.49413 0.85140 0.78350 0.76885 0.78737 1.19660 1.21151 1.17803 0.89187 0.88010 0.89798 0.78642 0.78975 0.85218 0.85113 0.75033 0.99082 0.99092 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 8.72 71.24 0.62 -0.45 16 2 C -0.06 -0.69 5.92 -19.55 -0.12 -0.80 16 3 C -0.02 -0.10 9.55 22.72 0.22 0.11 16 4 C -0.04 -0.35 5.75 -21.22 -0.12 -0.48 16 5 C 0.28 3.51 15.36 88.33 1.36 4.87 16 6 N -0.43 -7.77 18.54 19.00 0.35 -7.42 16 7 C 0.14 2.04 10.92 85.18 0.93 2.97 16 8 N -0.46 -10.11 10.10 -183.91 -1.86 -11.97 16 9 C 0.09 1.84 6.75 41.89 0.28 2.13 16 10 C 0.52 12.67 7.89 70.44 0.56 13.23 16 11 O -0.49 -11.19 13.07 20.07 0.26 -10.93 16 12 O -0.33 -10.25 9.57 -49.50 -0.47 -10.72 16 13 C 0.06 1.61 5.95 71.23 0.42 2.03 16 14 C 0.50 19.78 7.91 87.66 0.69 20.47 16 15 O -0.58 -29.75 16.50 15.76 0.26 -29.49 16 16 N -0.70 -28.41 5.55 -466.77 -2.59 -31.00 16 17 C 0.27 14.34 5.43 85.63 0.46 14.81 16 18 C -0.56 -29.51 9.28 25.60 0.24 -29.27 16 19 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 20 C 0.00 0.15 5.46 84.65 0.46 0.61 16 21 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 22 Si 0.99 41.61 29.54 68.60 2.03 43.63 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 25 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 26 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 0.26 8.05 -2.39 -0.02 0.24 16 28 H 0.08 1.12 5.84 -2.39 -0.01 1.11 16 29 H 0.20 -0.17 8.06 -2.91 -0.02 -0.19 16 30 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.41 13.24 8.32 -92.71 -0.77 12.47 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 36 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -79.52 337.29 4.65 -74.86 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.38 Total: 8.11 kcal Atomic # 6 Polarization: 24.22 SS G_CDS: 6.01 Total: 30.22 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -3.81 Total: -105.70 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: 0.05 Total: -51.14 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -79.52 4.65 -74.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815337307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.858 kcal (2) G-P(sol) polarization free energy of solvation -79.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds