Wall clock time and date at job start Tue Mar 31 2020 03:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86799 * 120.00198 * 2 1 4 4 H 1.48511 * 109.46846 * 269.99916 * 3 2 1 5 5 H 1.48498 * 109.47061 * 29.99677 * 3 2 1 6 6 H 1.48498 * 109.47602 * 150.00270 * 3 2 1 7 7 C 1.38657 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99938 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00105 * 0.02562 * 7 2 1 10 10 C 1.35748 * 116.99936 * 185.05453 * 9 7 2 11 11 C 1.38897 * 120.06994 * 354.48758 * 10 9 7 12 12 C 1.38090 * 119.92981 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.06546 * 359.74288 * 12 11 10 14 14 C 1.38276 * 120.14281 * 0.50798 * 13 12 11 15 15 C 1.50698 * 119.96635 * 179.76934 * 14 13 12 16 16 C 1.50701 * 109.47298 * 269.72341 * 15 14 13 17 17 O 1.20827 * 119.99840 * 0.02562 * 16 15 14 18 18 O 1.34223 * 120.00532 * 179.97438 * 16 15 14 19 19 C 1.45197 * 117.00662 * 180.02562 * 18 16 15 20 20 C 1.50701 * 109.47520 * 180.02562 * 19 18 16 21 21 C 1.35348 * 126.91025 * 359.96030 * 20 19 18 22 22 N 1.33767 * 106.49603 * 180.02562 * 21 20 19 23 23 N 1.28641 * 108.88808 * 359.97438 * 22 21 20 24 24 N 1.28723 * 110.17142 * 359.97438 * 23 22 21 25 25 H 0.97002 * 125.86151 * 179.72790 * 24 23 22 26 26 C 1.38118 * 120.06837 * 359.49370 * 14 13 12 27 27 H 0.97000 * 120.00360 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.03578 * 359.95212 * 11 10 9 29 29 H 1.07997 * 119.96047 * 179.97438 * 12 11 10 30 30 H 1.07998 * 119.92617 * 180.28328 * 13 12 11 31 31 H 1.09000 * 109.47533 * 149.72635 * 15 14 13 32 32 H 1.09002 * 109.47235 * 29.72282 * 15 14 13 33 33 H 1.08998 * 109.46960 * 60.00097 * 19 18 16 34 34 H 1.08999 * 109.47242 * 300.00821 * 19 18 16 35 35 H 1.07998 * 126.75312 * 0.05429 * 21 20 19 36 36 H 1.07998 * 120.03684 * 180.23313 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4002 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4402 0.6999 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1076 11 6 3.4573 -3.4394 0.0956 12 6 4.2024 -4.5968 0.2053 13 6 3.5685 -5.8196 0.3324 14 6 2.1874 -5.8884 0.3394 15 6 1.5009 -7.2232 0.4729 16 6 1.2657 -7.8063 -0.8967 17 8 1.6197 -7.2003 -1.8802 18 8 0.6639 -8.9993 -1.0241 19 6 0.4706 -9.4996 -2.3733 20 6 -0.2155 -10.8402 -2.3186 21 6 -0.6063 -11.5087 -1.2085 22 7 -1.1675 -12.6478 -1.6288 23 7 -1.1275 -12.6822 -2.9142 24 7 -0.5655 -11.6174 -3.3694 25 1 -0.4140 -11.4104 -4.3049 26 6 1.4365 -4.7343 0.2301 27 1 -0.4851 0.8400 0.0004 28 1 3.9528 -2.4846 0.0003 29 1 5.2812 -4.5468 0.1956 30 1 4.1534 -6.7230 0.4226 31 1 0.5454 -7.0913 0.9805 32 1 2.1299 -7.8990 1.0523 33 1 1.4383 -9.6060 -2.8635 34 1 -0.1464 -8.7988 -2.9358 35 1 -0.4886 -11.1857 -0.1847 36 1 0.3579 -4.7882 0.2395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821585907.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:07 Heat of formation + Delta-G solvation = 12.133215 kcal Electronic energy + Delta-G solvation = -22779.620530 eV Core-core repulsion = 19039.391127 eV Total energy + Delta-G solvation = -3740.229403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.71269 -40.66704 -39.04997 -37.12646 -36.31398 -33.90873 -32.72474 -32.36648 -32.03100 -29.34628 -28.08519 -26.78347 -25.29363 -23.46521 -22.63673 -21.83548 -21.53037 -20.42965 -18.87414 -17.80305 -17.62788 -17.16100 -17.02767 -16.41448 -16.26516 -15.16678 -14.73860 -14.68056 -14.46701 -14.37227 -13.95570 -13.58968 -13.50257 -12.91510 -12.70413 -12.52963 -12.22548 -11.99962 -11.63602 -11.35547 -11.33172 -11.28159 -10.94510 -10.91976 -10.87438 -10.70339 -10.53140 -10.47484 -9.56608 -9.39391 -8.87506 -8.18899 -7.29258 -6.47634 -4.06924 1.07122 1.68000 2.10998 2.15626 2.18066 2.31690 2.79685 3.11156 3.11784 3.16614 3.88958 3.93826 4.33062 4.44978 4.59024 4.69527 4.70351 4.85758 4.96128 5.04318 5.09702 5.26539 5.41418 5.55661 5.66947 5.78413 5.84816 6.09244 6.13452 6.25936 6.34973 6.57747 6.83363 7.01088 7.15283 7.29892 7.37890 7.65268 7.74287 7.96887 8.02088 8.97961 9.67254 10.70381 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.002433 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.325628 B =11507.287093 C =12023.940002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.153 3.847 11 C -0.226 4.226 12 C -0.074 4.074 13 C -0.195 4.195 14 C -0.047 4.047 15 C -0.061 4.061 16 C 0.465 3.535 17 O -0.484 6.484 18 O -0.352 6.352 19 C 0.144 3.856 20 C -0.021 4.021 21 C -0.019 4.019 22 N -0.266 5.266 23 N -0.074 5.074 24 N -0.383 5.383 25 H 0.450 0.550 26 C -0.172 4.172 27 H 0.270 0.730 28 H 0.127 0.873 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.199 0.801 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -17.617 -2.743 18.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.100 3.900 11 C -0.246 4.246 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.047 4.047 15 C -0.099 4.099 16 C 0.307 3.693 17 O -0.369 6.369 18 O -0.270 6.270 19 C 0.067 3.933 20 C -0.155 4.155 21 C -0.176 4.176 22 N -0.133 5.133 23 N -0.055 5.055 24 N -0.106 5.106 25 H 0.296 0.704 26 C -0.191 4.191 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.216 0.784 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.686 -18.597 -3.301 18.963 hybrid contribution 1.149 2.046 -0.611 2.424 sum 2.835 -16.551 -3.912 17.242 Atomic orbital electron populations 1.70033 1.05965 1.27700 1.46053 1.25289 0.95847 0.98836 0.96533 0.85712 0.78923 0.80066 0.78726 1.19885 1.20234 1.19176 1.21323 0.91799 0.80781 1.52932 0.89054 1.83976 1.34262 1.11401 1.78457 1.19268 0.90256 0.88000 0.92494 1.21222 0.93844 0.99078 1.10419 1.20698 0.98506 0.92254 0.97796 1.20371 0.93154 0.97133 1.10736 1.18638 0.93342 0.91425 1.01296 1.20279 1.03897 0.95214 0.90462 1.23983 0.74018 0.77874 0.93397 1.90749 1.46387 1.59479 1.40259 1.86433 1.73150 1.36956 1.30422 1.20754 1.00382 0.88778 0.83370 1.21704 1.07418 0.97622 0.88737 1.23523 1.01615 0.91851 1.00639 1.75142 1.17302 1.19305 1.01524 1.78341 1.15027 1.05666 1.06420 1.44952 1.40778 1.14081 1.10796 0.70442 1.19970 0.99178 0.89974 1.10020 0.91998 0.85486 0.87299 0.87689 0.86697 0.86835 0.88970 0.88854 0.78428 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.39 -10.84 9.49 30.89 0.29 -10.54 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.18 -5.01 9.76 0.06 0.00 -5.01 16 10 C 0.15 3.65 6.65 -39.10 -0.26 3.39 16 11 C -0.23 -4.84 9.17 -39.39 -0.36 -5.20 16 12 C -0.07 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.21 9.70 -39.54 -0.38 -3.59 16 14 C -0.05 -0.77 4.37 -104.65 -0.46 -1.23 16 15 C -0.06 -0.71 5.94 -29.04 -0.17 -0.88 16 16 C 0.47 5.82 7.95 36.01 0.29 6.10 16 17 O -0.48 -7.88 15.78 -18.75 -0.30 -8.18 16 18 O -0.35 -3.46 9.61 -39.24 -0.38 -3.84 16 19 C 0.14 1.14 6.09 36.01 0.22 1.36 16 20 C -0.02 -0.17 7.28 -82.09 -0.60 -0.77 16 21 C -0.02 -0.19 11.41 -17.74 -0.20 -0.39 16 22 N -0.27 -3.11 12.41 30.23 0.38 -2.74 16 23 N -0.07 -0.78 13.38 60.35 0.81 0.03 16 24 N -0.38 -2.75 6.98 33.54 0.23 -2.51 16 25 H 0.45 1.42 8.96 -190.39 -1.71 -0.29 16 26 C -0.17 -3.51 9.65 -39.39 -0.38 -3.89 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16 29 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.11 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.09 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.09 0.71 8.13 -51.93 -0.42 0.29 16 35 H 0.20 1.49 7.93 -52.49 -0.42 1.07 16 36 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -34.90 328.33 -5.86 -40.76 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.78 Total: 1.98 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -2.51 Total: -16.39 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 2.18 Total: -29.54 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.67 Total: -17.02 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.90 -5.86 -40.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821585907.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.890 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds