Wall clock time and date at job start Tue Mar 31 2020 03:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30250 * 125.62284 * 2 1 4 4 C 1.34481 * 108.70497 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16572 * 180.02562 * 4 3 2 6 6 C 1.34328 * 107.66538 * 359.97438 * 4 3 2 7 7 C 1.50699 * 126.43937 * 180.25750 * 6 4 3 8 8 N 1.46502 * 109.46888 * 89.72120 * 7 6 4 9 9 C 1.36941 * 119.99554 * 274.99884 * 8 7 6 10 10 H 1.07994 * 120.00111 * 354.84531 * 9 8 7 11 11 C 1.38812 * 119.99714 * 174.84338 * 9 8 7 12 12 N 1.31622 * 120.00294 * 325.57719 * 11 9 8 13 13 Si 1.86803 * 119.99946 * 145.57560 * 11 9 8 14 14 H 1.48502 * 109.47023 * 89.99848 * 13 11 9 15 15 H 1.48503 * 109.47319 * 210.00061 * 13 11 9 16 16 H 1.48497 * 109.47226 * 330.00271 * 13 11 9 17 17 S 1.65600 * 120.00436 * 94.99561 * 8 7 6 18 18 O 1.42102 * 106.39888 * 17.41200 * 17 8 7 19 19 O 1.42100 * 106.40379 * 150.32999 * 17 8 7 20 20 N 1.65594 * 107.21816 * 263.87373 * 17 8 7 21 21 C 1.46498 * 120.00165 * 45.70142 * 20 17 8 22 22 C 1.46504 * 119.99870 * 225.69805 * 20 17 8 23 23 O 1.33967 * 125.61674 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47144 * 269.97190 * 1 2 3 25 25 H 1.08999 * 109.46982 * 29.97336 * 1 2 3 26 26 H 1.09005 * 109.46893 * 149.97461 * 1 2 3 27 27 H 1.08999 * 109.47030 * 269.97527 * 5 4 3 28 28 H 1.09000 * 109.46879 * 29.97120 * 5 4 3 29 29 H 1.08998 * 109.46974 * 149.97403 * 5 4 3 30 30 H 1.09000 * 109.47366 * 209.71432 * 7 6 4 31 31 H 1.08994 * 109.47698 * 329.71811 * 7 6 4 32 32 H 0.97000 * 119.99766 * 179.97438 * 12 11 9 33 33 H 1.08992 * 109.47251 * 35.99748 * 21 20 17 34 34 H 1.09005 * 109.47283 * 155.99574 * 21 20 17 35 35 H 1.09008 * 109.46882 * 275.99257 * 21 20 17 36 36 H 1.09000 * 109.46887 * 90.00038 * 22 20 17 37 37 H 1.08998 * 109.47415 * 210.00270 * 22 20 17 38 38 H 1.08997 * 109.47128 * 330.00412 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 -0.0006 5 6 4.7571 1.5726 -0.0002 6 6 3.5698 -0.6757 -0.0004 7 6 4.7937 -1.5550 0.0046 8 7 5.1887 -1.8342 1.3875 9 6 5.9834 -0.9482 2.0647 10 1 6.3872 -0.0861 1.5548 11 6 6.2698 -1.1582 3.4067 12 7 5.3665 -1.7008 4.1954 13 14 7.9373 -0.6707 4.0932 14 1 7.8813 0.7310 4.5804 15 1 8.2921 -1.5722 5.2187 16 1 8.9640 -0.7832 3.0263 17 16 4.6741 -3.2212 2.1317 18 8 4.2431 -4.0952 1.0974 19 8 5.6799 -3.5681 3.0736 20 7 3.3244 -2.8346 3.0098 21 6 2.2699 -2.0140 2.4091 22 6 3.1849 -3.3132 4.3874 23 8 2.2872 -1.0891 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 5.0476 1.7912 -1.0278 28 1 4.5130 2.5022 0.5139 29 1 5.5821 1.0791 0.5135 30 1 4.5701 -2.4919 -0.5055 31 1 5.6086 -1.0464 -0.5103 32 1 5.5668 -1.8478 5.1330 33 1 2.1713 -2.2651 1.3531 34 1 1.3253 -2.2066 2.9180 35 1 2.5283 -0.9598 2.5094 36 1 3.6164 -2.5823 5.0713 37 1 2.1286 -3.4489 4.6197 38 1 3.7059 -4.2643 4.4961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853698966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:36 Heat of formation + Delta-G solvation = -3.125629 kcal Electronic energy + Delta-G solvation = -25495.794133 eV Core-core repulsion = 21890.347007 eV Total energy + Delta-G solvation = -3605.447125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -42.87849 -36.05304 -35.85271 -34.92135 -34.51797 -34.30668 -32.58796 -31.36516 -28.99803 -27.80915 -27.08582 -24.68669 -23.50731 -23.04592 -21.26034 -20.11326 -18.93700 -17.57368 -16.66843 -16.38314 -15.68705 -15.54956 -14.99892 -14.38643 -14.09476 -14.00281 -13.75660 -13.47417 -13.06586 -12.87338 -12.79660 -12.69905 -12.35361 -12.17300 -12.01819 -11.73105 -11.51987 -11.32489 -11.19667 -11.09856 -10.93662 -10.55493 -10.42994 -10.32827 -10.23425 -10.14971 -10.06960 -9.84148 -9.36197 -8.00824 -7.75410 -7.60657 -6.44915 -3.71673 1.87486 2.20348 3.10641 3.14577 3.29213 3.41736 3.43884 4.13144 4.39264 4.46097 4.89577 5.03218 5.24473 5.36862 5.45689 5.47967 5.65720 5.76080 5.78659 5.89084 6.03074 6.06930 6.15436 6.27379 6.28968 6.34540 6.37693 6.45777 6.56009 6.65515 6.89871 6.94557 7.02851 7.15408 7.63534 7.82516 8.23140 8.34673 8.98413 9.38038 10.67529 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.008376 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.331732 B = 3342.247870 C = 4152.509905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.165 3.835 3 N -0.483 5.483 4 C 0.000 4.000 5 C -0.075 4.075 6 C -0.052 4.052 7 C 0.197 3.803 8 N -0.848 5.848 9 C -0.335 4.335 10 H 0.100 0.900 11 C 0.041 3.959 12 N -0.838 5.838 13 Si 0.926 3.074 14 H -0.287 1.287 15 H -0.284 1.284 16 H -0.272 1.272 17 S 2.785 3.215 18 O -1.039 7.039 19 O -0.957 6.957 20 N -0.987 5.987 21 C 0.100 3.900 22 C 0.125 3.875 23 O -0.196 6.196 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.279 0.721 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.661 2.656 -4.908 8.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.041 4.041 3 N -0.214 5.214 4 C -0.121 4.121 5 C -0.132 4.132 6 C -0.107 4.107 7 C 0.068 3.932 8 N -0.678 5.678 9 C -0.465 4.465 10 H 0.118 0.882 11 C -0.167 4.167 12 N -0.476 5.476 13 Si 0.753 3.247 14 H -0.214 1.214 15 H -0.209 1.209 16 H -0.197 1.197 17 S 2.796 3.204 18 O -1.023 7.023 19 O -0.940 6.940 20 N -0.824 5.824 21 C -0.047 4.047 22 C -0.021 4.021 23 O -0.083 6.083 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.557 2.226 -4.755 8.400 hybrid contribution 0.479 0.193 0.744 0.906 sum -6.078 2.419 -4.011 7.673 Atomic orbital electron populations 1.20146 0.82218 1.04406 1.04223 1.25991 0.96157 0.79440 1.02560 1.70244 1.02020 1.30432 1.18709 1.21329 0.92779 0.92230 1.05718 1.20237 0.93231 0.97953 1.01742 1.24577 0.83656 0.96137 1.06345 1.19809 0.88495 0.97577 0.87311 1.54402 1.57242 1.39435 1.16720 1.18887 1.23362 1.10668 0.93612 0.88237 1.24911 0.98890 0.97808 0.95129 1.69742 1.30767 1.40480 1.06657 0.85971 0.83316 0.76878 0.78511 1.21396 1.20910 1.19744 1.01910 0.73304 0.73590 0.71572 1.93459 1.83912 1.65057 1.59830 1.93552 1.56363 1.82949 1.61154 1.57592 1.35600 1.65894 1.23311 1.21650 0.90609 0.94951 0.97495 1.21131 0.98060 0.98462 0.84477 1.84508 1.17065 1.37052 1.69720 0.89446 0.88740 0.89770 0.91846 0.91417 0.88979 0.88979 0.87573 0.90985 0.91348 0.93300 0.94378 0.91126 0.94807 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.51 36.01 0.38 -0.19 16 2 C 0.17 2.73 8.07 -12.95 -0.10 2.62 16 3 N -0.48 -8.91 11.29 -7.36 -0.08 -8.99 16 4 C 0.00 0.00 7.11 -82.81 -0.59 -0.59 16 5 C -0.07 -1.21 10.05 36.01 0.36 -0.85 16 6 C -0.05 -1.01 5.69 -35.69 -0.20 -1.21 16 7 C 0.20 3.90 5.77 -5.19 -0.03 3.87 16 8 N -0.85 -19.89 2.76 -61.09 -0.17 -20.06 16 9 C -0.33 -8.17 9.32 -15.06 -0.14 -8.31 16 10 H 0.10 2.26 5.77 -52.49 -0.30 1.95 16 11 C 0.04 1.05 3.98 -17.43 -0.07 0.98 16 12 N -0.84 -21.76 6.57 55.49 0.36 -21.40 16 13 Si 0.93 20.95 29.67 -169.99 -5.04 15.91 16 14 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 S 2.78 69.80 4.97 -107.50 -0.53 69.27 16 18 O -1.04 -26.83 16.59 -57.17 -0.95 -27.78 16 19 O -0.96 -26.48 13.09 -57.17 -0.75 -27.23 16 20 N -0.99 -22.41 2.85 -129.20 -0.37 -22.78 16 21 C 0.10 2.03 8.72 59.85 0.52 2.55 16 22 C 0.13 2.59 9.48 59.85 0.57 3.15 16 23 O -0.20 -3.65 6.80 5.35 0.04 -3.62 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.57 5.20 -51.93 -0.27 1.30 16 30 H 0.09 1.79 6.87 -51.93 -0.36 1.44 16 31 H 0.11 1.81 7.74 -51.93 -0.40 1.41 16 32 H 0.28 7.08 7.97 -40.82 -0.33 6.75 16 33 H 0.07 1.39 4.81 -51.99 -0.25 1.14 16 34 H 0.05 0.85 7.83 -51.93 -0.41 0.44 16 35 H 0.04 0.84 7.63 -51.92 -0.40 0.44 16 36 H 0.07 1.53 6.13 -51.93 -0.32 1.21 16 37 H 0.03 0.58 7.85 -51.93 -0.41 0.17 16 38 H 0.04 0.91 7.72 -51.93 -0.40 0.51 16 LS Contribution 310.85 15.07 4.68 4.68 Total: -1.00 -31.83 310.85 -6.86 -38.69 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.75 Total: 1.26 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 0.69 Total: 2.03 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -0.26 Total: -73.23 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -1.66 Total: -58.62 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.04 Total: 15.91 kcal Atomic # 16 Polarization: 69.80 SS G_CDS: -0.53 Total: 69.27 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.83 -6.86 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853698966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.568 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds