Wall clock time and date at job start Tue Mar 31 2020 03:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99782 * 2 1 4 4 O 1.20823 * 120.00251 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99788 * 179.97438 * 3 2 1 6 6 S 1.81403 * 112.84803 * 179.97438 * 5 3 2 7 7 O 1.42100 * 110.54211 * 297.18319 * 6 5 3 8 8 O 1.42097 * 110.54111 * 160.42989 * 6 5 3 9 9 N 1.65600 * 104.44952 * 48.80378 * 6 5 3 10 10 C 1.36940 * 120.00049 * 89.99531 * 9 6 5 11 11 H 1.07997 * 120.00063 * 303.49393 * 10 9 6 12 12 C 1.38808 * 119.99999 * 123.21014 * 10 9 6 13 13 N 1.31626 * 120.00052 * 344.71956 * 12 10 9 14 14 Si 1.86801 * 120.00266 * 164.71832 * 12 10 9 15 15 H 1.48494 * 109.47096 * 60.00113 * 14 12 10 16 16 H 1.48498 * 109.47180 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46882 * 300.00217 * 14 12 10 18 18 C 1.46499 * 120.00404 * 269.99969 * 9 6 5 19 19 C 1.52994 * 117.50324 * 191.84223 * 18 9 6 20 20 C 1.53000 * 117.50095 * 123.17826 * 18 9 6 21 21 C 1.53769 * 113.69258 * 311.26874 * 5 3 2 22 22 C 1.53782 * 87.08326 * 89.12718 * 21 5 3 23 23 C 1.53777 * 113.61418 * 48.80588 * 5 3 2 24 24 H 1.09005 * 109.46679 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46847 * 299.99968 * 1 2 3 26 26 H 1.08997 * 109.47203 * 60.00002 * 1 2 3 27 27 H 0.96996 * 120.00062 * 185.05601 * 13 12 10 28 28 H 1.09002 * 115.54574 * 337.51501 * 18 9 6 29 29 H 1.09001 * 117.49648 * 359.97438 * 19 18 9 30 30 H 1.08993 * 117.49976 * 145.01748 * 19 18 9 31 31 H 1.08993 * 117.50408 * 214.98472 * 20 18 9 32 32 H 1.09004 * 117.49606 * 0.02562 * 20 18 9 33 33 H 1.09007 * 113.61606 * 203.67500 * 21 5 3 34 34 H 1.09005 * 113.61502 * 334.57663 * 21 5 3 35 35 H 1.08997 * 113.61133 * 270.88263 * 22 21 5 36 36 H 1.09000 * 113.69128 * 139.99459 * 22 21 5 37 37 H 1.09005 * 113.61992 * 25.34409 * 23 5 3 38 38 H 1.09002 * 113.61939 * 156.16506 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 16 4.1822 2.9812 -0.0003 7 8 3.7803 3.6558 -1.1845 8 8 5.5306 3.0248 0.4460 9 7 3.3286 3.7292 1.2055 10 6 3.8146 3.7360 2.4858 11 1 4.0421 2.8041 2.9819 12 6 4.0204 4.9408 3.1437 13 7 4.0421 6.0671 2.4629 14 14 4.2664 4.9639 4.9953 15 1 5.4614 4.1551 5.3459 16 1 4.4642 6.3633 5.4510 17 1 3.0686 4.3916 5.6609 18 6 2.0534 4.3838 0.9028 19 6 1.4500 5.2877 1.9796 20 6 0.8204 3.9241 1.6835 21 6 4.2316 0.3800 1.0594 22 6 4.2375 -0.7346 -0.0001 23 6 4.2305 0.3802 -1.0592 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 4.2584 6.9001 2.9102 28 1 1.9102 4.6757 -0.1376 29 1 2.0016 5.3950 2.9136 30 1 0.9096 6.1741 1.6478 31 1 -0.1338 3.9141 1.1570 32 1 0.9582 3.1350 2.4228 33 1 5.2285 0.7128 1.3485 34 1 3.5910 0.1658 1.9150 35 1 3.3325 -1.3422 0.0004 36 1 5.1487 -1.3327 -0.0016 37 1 3.5891 0.1662 -1.9142 38 1 5.2265 0.7139 -1.3504 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881823693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:37 Heat of formation + Delta-G solvation = -72.234219 kcal Electronic energy + Delta-G solvation = -25439.952697 eV Core-core repulsion = 21799.216047 eV Total energy + Delta-G solvation = -3640.736650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.54901 -37.98745 -37.01845 -36.19942 -35.73961 -34.69899 -32.63260 -30.82611 -28.08556 -26.39407 -25.76812 -24.70585 -22.05830 -21.04952 -20.48311 -19.79117 -18.29259 -17.51353 -17.09860 -16.46157 -16.16390 -16.03131 -15.75920 -14.81371 -14.47972 -14.41164 -13.74289 -13.43386 -13.27296 -13.19621 -12.45354 -12.30934 -12.11784 -12.05987 -11.99735 -11.62110 -11.23954 -11.00651 -10.93533 -10.84025 -10.78340 -10.65643 -10.62180 -10.45416 -10.29695 -10.17782 -10.11037 -9.75533 -9.28770 -8.88094 -8.38250 -7.18864 -6.24026 -4.08831 1.27602 2.44500 2.82586 3.21477 3.26103 3.27397 3.91332 4.24217 4.40365 4.52548 4.74816 4.78283 4.92660 5.06659 5.20302 5.27411 5.29639 5.46977 5.58433 5.58939 5.69583 5.77440 5.91161 6.04243 6.06985 6.27746 6.32994 6.44269 6.46690 6.66741 6.76160 6.85497 7.20470 7.46052 7.62563 7.91186 8.03354 8.45998 9.04517 9.49440 10.77475 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.007795 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.276058 B = 3591.038754 C = 4007.426159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.505 3.495 4 O -0.458 6.458 5 C -0.609 4.609 6 S 2.577 3.423 7 O -0.982 6.982 8 O -0.947 6.947 9 N -0.800 5.800 10 C -0.294 4.294 11 H 0.078 0.922 12 C 0.061 3.939 13 N -0.832 5.832 14 Si 0.906 3.094 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.146 3.854 19 C -0.166 4.166 20 C -0.190 4.190 21 C -0.090 4.090 22 C -0.128 4.128 23 C -0.102 4.102 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.270 0.730 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 -11.984 -2.261 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.345 3.655 4 O -0.342 6.342 5 C -0.690 4.690 6 S 2.673 3.327 7 O -0.972 6.972 8 O -0.937 6.937 9 N -0.628 5.628 10 C -0.432 4.432 11 H 0.095 0.905 12 C -0.151 4.151 13 N -0.468 5.468 14 Si 0.731 3.269 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.196 1.196 18 C 0.037 3.963 19 C -0.206 4.206 20 C -0.231 4.231 21 C -0.127 4.127 22 C -0.166 4.166 23 C -0.140 4.140 24 H 0.113 0.887 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.351 -11.224 -2.979 12.401 hybrid contribution -0.453 -0.309 1.093 1.222 sum -4.804 -11.533 -1.886 12.635 Atomic orbital electron populations 1.23232 0.76813 1.03052 1.02765 1.86450 1.22756 1.33318 1.84723 1.21604 0.88454 0.81909 0.73561 1.90925 1.65988 1.34760 1.42483 1.32320 0.97320 1.30832 1.08532 1.07854 0.75202 0.74813 0.74873 1.93401 1.83738 1.68366 1.51685 1.93467 1.34229 1.84595 1.81394 1.51759 1.27154 1.65721 1.18165 1.18767 1.43846 0.92809 0.87827 0.90468 1.25675 0.93973 0.95844 0.99584 1.70092 1.41411 0.98854 1.36412 0.86374 0.79280 0.77723 0.83524 1.19426 1.20704 1.19580 1.20740 0.82047 0.98622 0.94844 1.23302 1.02492 0.91548 1.03252 1.23003 0.97159 0.98319 1.04587 1.22555 1.01461 0.93426 0.95305 1.22912 1.02949 0.96127 0.94597 1.22560 1.00313 0.95320 0.95825 0.88652 0.91692 0.92018 0.91973 0.87565 0.86932 0.91488 0.91189 0.90383 0.87073 0.89633 0.88674 0.90745 0.89731 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.17 8.66 -39.26 -0.34 -5.51 16 3 C 0.50 9.01 7.04 36.01 0.25 9.27 16 4 O -0.46 -9.19 10.27 -18.75 -0.19 -9.38 16 5 C -0.61 -11.00 1.44 -90.97 -0.13 -11.13 16 6 S 2.58 61.34 4.69 -107.50 -0.50 60.83 16 7 O -0.98 -25.72 16.73 -57.54 -0.96 -26.69 16 8 O -0.95 -24.63 16.40 -57.54 -0.94 -25.57 16 9 N -0.80 -20.16 2.59 -53.43 -0.14 -20.30 16 10 C -0.29 -7.56 8.04 -15.06 -0.12 -7.69 16 11 H 0.08 1.88 7.88 -52.49 -0.41 1.47 16 12 C 0.06 1.57 3.15 -17.43 -0.05 1.52 16 13 N -0.83 -22.73 11.61 55.49 0.64 -22.08 16 14 Si 0.91 19.76 29.47 -169.99 -5.01 14.75 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 C 0.15 3.55 3.90 -67.93 -0.27 3.29 16 19 C -0.17 -3.85 8.60 -26.70 -0.23 -4.08 16 20 C -0.19 -4.05 7.79 -26.69 -0.21 -4.25 16 21 C -0.09 -1.39 7.18 -25.92 -0.19 -1.57 16 22 C -0.13 -1.60 7.63 -25.92 -0.20 -1.79 16 23 C -0.10 -1.48 7.21 -25.92 -0.19 -1.66 16 24 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.27 6.94 8.32 -40.82 -0.34 6.60 16 28 H 0.11 2.68 7.23 -51.93 -0.38 2.31 16 29 H 0.11 2.79 4.69 -51.93 -0.24 2.54 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 33 H 0.11 1.77 7.43 -51.93 -0.39 1.39 16 34 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.09 1.12 6.84 -51.93 -0.36 0.76 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 38 H 0.10 1.31 8.10 -51.93 -0.42 0.89 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -32.27 317.93 -8.04 -40.31 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.13 Total: 5.50 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -0.26 Total: -16.65 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.51 Total: -42.39 kcal Atomic # 8 Polarization: -64.72 SS G_CDS: -2.44 Total: -67.16 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.01 Total: 14.75 kcal Atomic # 16 Polarization: 61.34 SS G_CDS: -0.50 Total: 60.83 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.27 -8.04 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881823693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.925 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds