Wall clock time and date at job start Tue Mar 31 2020 03:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34224 * 117.00181 * 2 1 4 4 O 1.20825 * 120.00434 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00055 * 179.97438 * 3 2 1 6 6 S 1.81396 * 112.85175 * 179.97438 * 5 3 2 7 7 O 1.42104 * 110.54698 * 297.18002 * 6 5 3 8 8 O 1.42098 * 110.54730 * 160.42967 * 6 5 3 9 9 N 1.65604 * 104.44849 * 48.80753 * 6 5 3 10 10 C 1.47067 * 136.05274 * 269.62928 * 9 6 5 11 11 C 1.53497 * 87.98534 * 153.13757 * 10 9 6 12 12 C 1.50697 * 114.21116 * 139.65535 * 11 10 9 13 13 H 1.07997 * 119.99821 * 266.40153 * 12 11 10 14 14 C 1.37879 * 120.00200 * 86.39769 * 12 11 10 15 15 N 1.31510 * 119.99532 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99963 * 180.02562 * 14 12 11 17 17 H 1.48509 * 109.46949 * 60.00240 * 16 14 12 18 18 H 1.48504 * 109.47122 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47285 * 300.00308 * 16 14 12 20 20 C 1.47066 * 136.06141 * 89.99812 * 9 6 5 21 21 C 1.53775 * 113.69328 * 311.27079 * 5 3 2 22 22 C 1.53781 * 87.08466 * 89.12532 * 21 5 3 23 23 C 1.53781 * 113.61444 * 48.80733 * 5 3 2 24 24 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47049 * 300.00341 * 1 2 3 26 26 H 1.09006 * 109.46858 * 59.99903 * 1 2 3 27 27 H 1.09007 * 113.46858 * 267.91239 * 10 9 6 28 28 H 1.08993 * 113.47208 * 38.35575 * 10 9 6 29 29 H 1.09000 * 114.38223 * 272.46676 * 11 10 9 30 30 H 0.97007 * 119.99661 * 179.97438 * 15 14 12 31 31 H 1.09005 * 113.46156 * 321.64466 * 20 9 6 32 32 H 1.08994 * 113.46837 * 92.02107 * 20 9 6 33 33 H 1.09000 * 113.62100 * 203.67586 * 21 5 3 34 34 H 1.09004 * 113.61379 * 334.58073 * 21 5 3 35 35 H 1.08999 * 113.61485 * 270.88874 * 22 21 5 36 36 H 1.08998 * 113.69351 * 139.99041 * 22 21 5 37 37 H 1.08998 * 113.61697 * 25.34301 * 23 5 3 38 38 H 1.09001 * 113.61677 * 156.25286 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 16 4.1823 2.9809 -0.0003 7 8 3.7805 3.6557 -1.1846 8 8 5.5307 3.0245 0.4460 9 7 3.3288 3.7290 1.2056 10 6 2.0641 4.4734 1.3028 11 6 1.9767 4.0269 2.7688 12 6 1.4855 5.0948 3.7119 13 1 2.1935 5.7221 4.2331 14 6 0.1324 5.2710 3.9092 15 7 -0.7296 4.5068 3.2748 16 14 -0.4764 6.5952 5.0777 17 1 -0.0063 7.9235 4.6085 18 1 -1.9610 6.5801 5.1126 19 1 0.0540 6.3352 6.4401 20 6 3.5049 3.9470 2.6494 21 6 4.2315 0.3797 1.0594 22 6 4.2374 -0.7349 -0.0001 23 6 4.2304 0.3801 -1.0593 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.1839 5.5502 1.1835 28 1 1.2709 4.0651 0.6767 29 1 1.4891 3.0634 2.9174 30 1 -1.6817 4.6305 3.4140 31 1 3.9367 3.0911 3.1680 32 1 4.0094 4.8831 2.8886 33 1 5.2284 0.7125 1.3486 34 1 3.5910 0.1655 1.9149 35 1 3.3324 -1.3424 0.0003 36 1 5.1486 -1.3329 -0.0016 37 1 3.5890 0.1661 -1.9142 38 1 5.2270 0.7129 -1.3493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882393073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:32 Heat of formation + Delta-G solvation = -81.570602 kcal Electronic energy + Delta-G solvation = -24600.339278 eV Core-core repulsion = 20959.197773 eV Total energy + Delta-G solvation = -3641.141506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82881 -38.36175 -38.06467 -36.82687 -36.28450 -35.64747 -32.53741 -28.39392 -28.13064 -26.69781 -26.15060 -24.79513 -24.40384 -22.30448 -20.30671 -19.53528 -18.38065 -17.66252 -17.23045 -16.60446 -16.53012 -16.24426 -15.96391 -15.38813 -14.78265 -14.55106 -13.93741 -13.66099 -13.51319 -12.96433 -12.85149 -12.73069 -12.59908 -12.38457 -12.11882 -11.85345 -11.74534 -11.61583 -11.39777 -11.31083 -11.09759 -10.89982 -10.85049 -10.67393 -10.57104 -10.35103 -10.25559 -10.06376 -9.11389 -8.93875 -8.46721 -8.04838 -6.06775 -4.11231 0.45585 2.15797 2.51982 3.11027 3.31262 3.36060 3.38853 3.86752 3.96543 4.14455 4.41007 4.44209 4.53919 4.69624 5.01564 5.20433 5.24518 5.25294 5.33843 5.40567 5.59330 5.65283 5.67502 5.73064 5.91250 6.07102 6.28559 6.34560 6.42679 6.47164 6.65068 6.92891 7.19694 7.62122 7.75390 7.89544 7.91219 8.33439 8.91131 9.53414 11.02334 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.018727 B = 0.005748 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.799968 B = 4870.462415 C = 5684.850699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.351 6.351 3 C 0.507 3.493 4 O -0.461 6.461 5 C -0.611 4.611 6 S 2.656 3.344 7 O -0.947 6.947 8 O -0.954 6.954 9 N -1.035 6.035 10 C 0.134 3.866 11 C 0.037 3.963 12 C -0.517 4.517 13 H 0.062 0.938 14 C 0.068 3.932 15 N -0.883 5.883 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.125 3.875 21 C -0.096 4.096 22 C -0.124 4.124 23 C -0.100 4.100 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.262 0.738 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.100 -12.468 -6.156 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.268 6.268 3 C 0.347 3.653 4 O -0.345 6.345 5 C -0.696 4.696 6 S 2.747 3.253 7 O -0.937 6.937 8 O -0.945 6.945 9 N -0.876 5.876 10 C 0.010 3.990 11 C 0.016 3.984 12 C -0.556 4.556 13 H 0.080 0.920 14 C -0.135 4.135 15 N -0.520 5.520 16 Si 0.721 3.279 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.202 1.202 20 C 0.000 4.000 21 C -0.134 4.134 22 C -0.162 4.162 23 C -0.139 4.139 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.431 -11.965 -6.953 15.260 hybrid contribution -1.016 0.282 0.684 1.257 sum 5.415 -11.684 -6.269 14.322 Atomic orbital electron populations 1.23360 0.75643 1.03458 1.03563 1.86390 1.23649 1.32460 1.84300 1.21362 0.87961 0.82364 0.73625 1.90855 1.65917 1.35045 1.42730 1.32219 0.98645 1.28681 1.10060 1.03648 0.73356 0.74887 0.73455 1.93544 1.83476 1.69089 1.47616 1.93559 1.33133 1.85814 1.81949 1.59658 1.39145 1.66345 1.22497 1.23129 0.81216 0.94014 1.00640 1.20406 0.88333 0.98085 0.91552 1.20958 0.91733 1.17329 1.25544 0.92009 1.25020 0.96966 0.95959 0.95604 1.69971 1.02001 1.38397 1.41647 0.86648 0.77521 0.82347 0.81391 1.20121 1.21365 1.20195 1.22847 1.01639 0.99163 0.76320 1.22664 1.01168 0.93852 0.95757 1.22884 1.03652 0.95964 0.93713 1.22626 1.00341 0.94925 0.95974 0.88260 0.90784 0.91789 0.91744 0.90067 0.91912 0.92825 0.93067 0.90862 0.87101 0.88927 0.88164 0.90215 0.89010 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.35 -4.91 8.66 -39.24 -0.34 -5.25 16 3 C 0.51 8.48 7.04 36.01 0.25 8.73 16 4 O -0.46 -9.39 11.98 -18.75 -0.22 -9.62 16 5 C -0.61 -9.12 1.44 -90.96 -0.13 -9.25 16 6 S 2.66 50.01 5.14 -107.50 -0.55 49.45 16 7 O -0.95 -20.56 18.06 -57.54 -1.04 -21.60 16 8 O -0.95 -18.46 17.25 -57.54 -0.99 -19.45 16 9 N -1.04 -21.65 3.49 -125.18 -0.44 -22.09 16 10 C 0.13 3.17 7.43 -8.51 -0.06 3.11 16 11 C 0.04 0.90 3.79 -91.26 -0.35 0.56 16 12 C -0.52 -13.52 8.82 -34.44 -0.30 -13.83 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.88 -24.69 13.26 55.43 0.74 -23.95 16 16 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.13 2.58 8.26 -8.51 -0.07 2.51 16 21 C -0.10 -1.16 7.18 -25.92 -0.19 -1.35 16 22 C -0.12 -1.20 7.63 -25.92 -0.20 -1.40 16 23 C -0.10 -1.12 7.21 -25.92 -0.19 -1.31 16 24 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 26 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 27 H 0.06 1.54 8.10 -51.93 -0.42 1.12 16 28 H 0.08 2.03 5.63 -51.93 -0.29 1.73 16 29 H 0.06 1.62 8.11 -51.93 -0.42 1.20 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 33 H 0.11 1.26 7.43 -51.93 -0.39 0.87 16 34 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 35 H 0.10 0.96 6.84 -51.93 -0.36 0.60 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -32.48 328.82 -8.39 -40.87 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.21 Total: 0.15 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.26 Total: -9.03 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.30 Total: -46.04 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -2.60 Total: -55.91 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 50.01 SS G_CDS: -0.55 Total: 49.45 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.48 -8.39 -40.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882393073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.697 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds