Wall clock time and date at job start Tue Mar 31 2020 03:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00036 * 2 1 4 4 C 1.50704 * 108.82915 * 57.05753 * 3 2 1 5 5 O 1.20829 * 120.00112 * 216.68820 * 4 3 2 6 6 O 1.34229 * 119.99950 * 36.68856 * 4 3 2 7 7 C 1.45195 * 117.00253 * 179.97438 * 6 4 3 8 8 C 1.50692 * 109.47304 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00138 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00034 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99868 * 179.72770 * 10 8 7 12 12 C 1.50706 * 109.47226 * 180.27779 * 11 10 8 13 13 H 1.08001 * 119.99581 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00100 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00015 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99823 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47365 * 89.99701 * 16 14 12 18 18 H 1.48502 * 109.47193 * 209.99451 * 16 14 12 19 19 H 1.48496 * 109.47224 * 329.99489 * 16 14 12 20 20 C 1.52339 * 108.86808 * 298.52887 * 3 2 1 21 21 C 1.54261 * 112.58669 * 239.32553 * 20 3 2 22 22 S 1.83954 * 102.58310 * 24.52529 * 21 20 3 23 23 C 1.54258 * 108.75436 * 175.52399 * 3 2 1 24 24 H 1.09002 * 109.46700 * 305.46099 * 1 2 3 25 25 H 1.08998 * 109.47374 * 65.45363 * 1 2 3 26 26 H 1.09000 * 109.47130 * 185.46178 * 1 2 3 27 27 H 1.09000 * 109.47053 * 59.99682 * 7 6 4 28 28 H 1.09001 * 109.46745 * 300.00401 * 7 6 4 29 29 H 0.96996 * 119.99704 * 0.02562 * 10 8 7 30 30 H 1.09007 * 109.47356 * 300.27409 * 11 10 8 31 31 H 1.08997 * 109.47847 * 60.27386 * 11 10 8 32 32 H 0.97006 * 119.99963 * 180.02562 * 15 14 12 33 33 H 1.08996 * 108.86649 * 0.14502 * 20 3 2 34 34 H 1.08996 * 108.86662 * 118.65247 * 20 3 2 35 35 H 1.08993 * 110.78760 * 142.80355 * 21 20 3 36 36 H 1.09007 * 110.78192 * 266.06420 * 21 20 3 37 37 H 1.09008 * 110.78656 * 214.48276 * 23 3 2 38 38 H 1.08998 * 110.78618 * 337.93904 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4995 2.0653 1.1970 5 8 1.2730 3.2490 1.1097 6 8 1.2962 1.4271 2.3603 7 6 0.8037 2.2221 3.4710 8 6 0.6367 1.3425 4.6832 9 8 0.9067 0.1619 4.6176 10 7 0.1874 1.8678 5.8402 11 6 0.0194 1.0116 7.0169 12 6 -0.4976 1.8354 8.1681 13 1 -0.6821 2.8914 8.0364 14 6 -0.7339 1.2414 9.3896 15 7 -0.5087 -0.0444 9.5501 16 14 -1.3740 2.2628 10.8166 17 1 -2.8590 2.2544 10.8045 18 1 -0.8863 1.6869 12.0956 19 1 -0.8858 3.6589 10.6843 20 6 1.5817 2.0356 -1.2665 21 6 2.7804 2.4642 -2.1377 22 16 4.0855 1.2669 -1.6407 23 6 3.5423 1.1662 0.1140 24 1 -0.3633 0.5962 0.8371 25 1 -0.3634 0.4269 -0.9348 26 1 -0.3633 -1.0230 0.0978 27 1 -0.1582 2.6607 3.2056 28 1 1.5163 3.0164 3.6933 29 1 -0.0288 2.8119 5.8925 30 1 -0.6922 0.2176 6.7900 31 1 0.9798 0.5724 7.2869 32 1 -0.6754 -0.4624 10.4095 33 1 0.9379 1.3786 -1.8513 34 1 1.0162 2.9244 -0.9867 35 1 2.5448 2.3622 -3.1970 36 1 3.0807 3.4863 -1.9065 37 1 3.9629 1.9858 0.6967 38 1 3.8120 0.2034 0.5478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885744095.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:46 Heat of formation + Delta-G solvation = -157.399131 kcal Electronic energy + Delta-G solvation = -22691.988478 eV Core-core repulsion = 19047.558801 eV Total energy + Delta-G solvation = -3644.429677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.40781 -39.18085 -38.38342 -36.74193 -34.39018 -34.30192 -32.46234 -30.66146 -29.30475 -26.98600 -26.70308 -25.95920 -23.44035 -22.43034 -20.20860 -19.98226 -18.80134 -17.81887 -17.19379 -17.12223 -16.82761 -15.91745 -15.67567 -15.30036 -15.22922 -14.98813 -14.66558 -14.49027 -14.17768 -13.71345 -13.33712 -13.11374 -12.84007 -12.69628 -12.43299 -12.30052 -12.05663 -11.98512 -11.85307 -11.62296 -11.10631 -11.04588 -10.97064 -10.85506 -10.53118 -10.38401 -9.98004 -9.48532 -9.25194 -8.82639 -8.10143 -8.04848 -6.23384 -4.31175 1.32324 1.55631 1.89603 2.09092 3.09140 3.15401 3.20200 3.26615 3.28826 3.73870 3.85121 4.05135 4.26971 4.39288 4.50516 4.51938 4.85350 4.92208 4.97821 5.07549 5.09336 5.11100 5.13311 5.22661 5.24554 5.27242 5.42887 5.50701 6.04500 6.51160 7.16401 7.22794 7.34720 7.40809 7.56372 7.87582 8.43361 8.65798 8.89885 9.35393 10.86704 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.037126 B = 0.002592 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.997730 B =10800.164045 C =10913.671793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.136 3.864 4 C 0.439 3.561 5 O -0.498 6.498 6 O -0.311 6.311 7 C 0.042 3.958 8 C 0.499 3.501 9 O -0.530 6.530 10 N -0.706 5.706 11 C 0.251 3.749 12 C -0.546 4.546 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.884 5.884 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.157 4.157 21 C -0.064 4.064 22 S -0.263 6.263 23 C -0.056 4.056 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.393 0.607 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.267 0.733 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 6.047 -22.764 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.263 6.263 3 C 0.093 3.907 4 C 0.279 3.721 5 O -0.386 6.386 6 O -0.225 6.225 7 C -0.035 4.035 8 C 0.281 3.719 9 O -0.407 6.407 10 N -0.356 5.356 11 C 0.131 3.869 12 C -0.585 4.585 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.521 5.521 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.195 4.195 21 C -0.212 4.212 22 S -0.036 6.036 23 C -0.204 4.204 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.226 0.774 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.871 4.648 -23.258 24.212 hybrid contribution -1.674 1.899 1.644 3.018 sum 3.197 6.547 -21.614 22.809 Atomic orbital electron populations 1.23020 0.79937 1.04508 1.00185 1.88165 1.20633 1.23225 1.94305 1.22084 0.94484 0.84523 0.89636 1.24535 0.74966 0.87225 0.85336 1.90672 1.47173 1.16386 1.84359 1.86689 1.75439 1.41603 1.18767 1.22988 1.01528 0.93975 0.85002 1.19824 0.79594 0.88470 0.83965 1.90733 1.49938 1.15947 1.84068 1.46373 1.64556 1.13547 1.11135 1.19187 0.97595 0.90129 0.79965 1.21196 1.46222 0.95607 0.95426 0.91782 1.24951 0.95122 0.95090 0.98803 1.69972 1.47035 1.10018 1.25099 0.86389 0.79076 0.80070 0.81230 1.20413 1.20935 1.19717 1.22681 0.99892 1.02831 0.94113 1.24101 0.93522 1.00418 1.03149 1.88123 1.45720 1.59608 1.10152 1.24150 0.91059 1.08655 0.96570 0.93367 0.93342 0.87961 0.88472 0.88333 0.77448 0.95237 0.95197 0.92323 0.88079 0.87676 0.86868 0.88442 0.87320 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.22 101.05 1.03 1.22 16 2 O -0.35 -4.07 9.99 -49.34 -0.49 -4.57 16 3 C 0.14 1.47 0.95 -91.45 -0.09 1.38 16 4 C 0.44 5.63 5.17 36.01 0.19 5.82 16 5 O -0.50 -6.74 15.14 -18.75 -0.28 -7.02 16 6 O -0.31 -4.72 8.74 -48.37 -0.42 -5.15 16 7 C 0.04 0.62 5.94 36.00 0.21 0.83 16 8 C 0.50 9.69 7.91 -10.99 -0.09 9.60 16 9 O -0.53 -12.67 16.50 -14.11 -0.23 -12.90 16 10 N -0.71 -14.18 5.55 -61.47 -0.34 -14.52 16 11 C 0.25 6.46 5.43 -5.19 -0.03 6.43 16 12 C -0.55 -14.41 9.28 -34.44 -0.32 -14.73 16 13 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.88 -25.57 13.29 55.43 0.74 -24.83 16 16 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 C -0.16 -1.29 5.15 -26.41 -0.14 -1.42 16 21 C -0.06 -0.46 7.46 37.82 0.28 -0.17 16 22 S -0.26 -2.56 23.27 -107.50 -2.50 -5.06 16 23 C -0.06 -0.57 6.61 37.82 0.25 -0.32 16 24 H 0.05 0.53 6.34 -51.93 -0.33 0.20 16 25 H 0.05 0.35 6.52 -51.93 -0.34 0.02 16 26 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 28 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 29 H 0.39 6.58 8.32 -40.82 -0.34 6.24 16 30 H 0.03 0.84 8.14 -51.92 -0.42 0.41 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.10 0.71 6.25 -51.93 -0.32 0.39 16 34 H 0.10 0.89 6.45 -51.93 -0.33 0.56 16 35 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.11 1.01 7.85 -51.92 -0.41 0.60 16 38 H 0.14 1.39 8.04 -51.93 -0.42 0.97 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -33.07 335.56 -7.28 -40.35 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.98 Total: 2.97 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 1.21 Total: 10.28 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.40 Total: -39.36 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.43 Total: -29.64 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.50 Total: -5.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.07 -7.28 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885744095.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.049 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds