Wall clock time and date at job start Tue Mar 31 2020 04:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47399 * 2 1 4 4 C 1.50703 * 109.47095 * 240.00149 * 2 1 3 5 5 H 1.08002 * 120.00354 * 275.00036 * 4 2 1 6 6 C 1.37881 * 119.99747 * 94.99912 * 4 2 1 7 7 N 1.31516 * 119.99765 * 184.91368 * 6 4 2 8 8 Si 1.86793 * 120.00227 * 4.91940 * 6 4 2 9 9 H 1.48507 * 109.47276 * 84.83436 * 8 6 4 10 10 H 1.48501 * 109.47224 * 204.83372 * 8 6 4 11 11 H 1.48496 * 109.47190 * 324.83224 * 8 6 4 12 12 N 1.46502 * 109.47310 * 120.00218 * 2 1 3 13 13 C 1.46500 * 119.99886 * 59.99844 * 12 2 1 14 14 S 1.65599 * 119.99961 * 239.99730 * 12 2 1 15 15 O 1.42100 * 106.40308 * 336.46092 * 14 12 2 16 16 O 1.42094 * 106.39978 * 203.53697 * 14 12 2 17 17 N 1.65604 * 107.21568 * 90.00240 * 14 12 2 18 18 C 1.46500 * 120.00073 * 64.99551 * 17 14 12 19 19 C 1.52997 * 109.46845 * 165.00159 * 18 17 14 20 20 C 1.50705 * 109.47279 * 180.02562 * 19 18 17 21 21 C 1.41379 * 128.00717 * 89.99475 * 20 19 18 22 22 N 1.30174 * 106.39300 * 179.97438 * 21 20 19 23 23 O 1.20924 * 111.60828 * 359.97438 * 22 21 20 24 24 C 1.34045 * 111.56619 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47097 * 294.97751 * 1 2 3 26 26 H 1.08999 * 109.47211 * 54.97790 * 1 2 3 27 27 H 1.09000 * 109.47008 * 174.97776 * 1 2 3 28 28 H 0.96999 * 120.00156 * 180.02562 * 7 6 4 29 29 H 1.08994 * 109.47111 * 270.00531 * 13 12 2 30 30 H 1.09007 * 109.47104 * 30.00164 * 13 12 2 31 31 H 1.09002 * 109.47027 * 150.00002 * 13 12 2 32 32 H 0.96996 * 119.99712 * 245.00050 * 17 14 12 33 33 H 1.08996 * 109.46976 * 44.99963 * 18 17 14 34 34 H 1.09001 * 109.47218 * 285.00053 * 18 17 14 35 35 H 1.08996 * 109.47493 * 60.00121 * 19 18 17 36 36 H 1.09001 * 109.47126 * 299.99951 * 19 18 17 37 37 H 1.07992 * 126.80246 * 359.71221 * 21 20 19 38 38 H 1.07997 * 126.77817 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7855 -1.2292 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3136 1.8791 -2.3174 9 1 3.5992 2.3949 -1.7822 10 1 2.1057 2.3992 -3.6927 11 1 1.1987 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 3.5795 1.1829 1.5748 16 8 3.7118 -0.8790 2.9813 17 7 1.9608 0.8089 3.3998 18 6 1.1510 -0.0354 4.2817 19 6 0.6088 0.8073 5.4378 20 6 -0.2237 -0.0613 6.3453 21 6 0.2019 -0.8041 7.4704 22 7 -0.8570 -1.3974 7.9409 23 8 -1.8411 -1.1350 7.2891 24 6 -1.5532 -0.3102 6.2724 25 1 -0.3633 0.4340 0.9316 26 1 -0.3633 0.5898 -0.8416 27 1 -0.3633 -1.0237 -0.0900 28 1 2.9370 -0.1047 -4.2555 29 1 0.7376 -2.1444 1.9992 30 1 1.5295 -2.5969 0.4707 31 1 2.4629 -2.5820 1.9862 32 1 1.9055 1.7749 3.4682 33 1 1.7670 -0.8426 4.6780 34 1 0.3188 -0.4568 3.7177 35 1 -0.0072 1.6145 5.0414 36 1 1.4409 1.2287 6.0017 37 1 1.2071 -0.8701 7.8595 38 1 -2.2448 0.0795 5.5402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907384119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:07 Heat of formation + Delta-G solvation = -14.037235 kcal Electronic energy + Delta-G solvation = -23332.688741 eV Core-core repulsion = 19726.768453 eV Total energy + Delta-G solvation = -3605.920288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.21531 -36.94732 -36.59539 -36.29522 -35.32028 -34.15775 -32.48530 -32.27721 -29.98456 -29.16814 -25.72149 -25.20240 -24.06020 -23.08346 -21.44482 -20.71188 -18.92640 -18.13521 -17.79720 -17.52955 -17.23715 -16.51496 -16.09469 -15.30742 -15.19463 -14.84718 -14.26857 -13.66440 -13.52944 -13.40658 -13.17572 -12.70066 -12.58315 -12.51827 -12.14584 -12.01086 -11.90015 -11.61264 -11.51941 -11.39985 -11.35738 -11.15754 -10.85530 -10.71394 -10.56201 -10.37354 -9.82601 -9.72595 -9.48219 -9.37899 -8.62843 -8.11537 -6.19585 -4.20448 1.05343 1.22745 1.95493 2.96265 3.25614 3.32670 3.39567 3.43850 3.97572 4.04567 4.35106 4.38063 4.55761 4.68914 4.85806 4.94315 5.11085 5.14845 5.20616 5.37111 5.48270 5.62764 5.71293 5.78876 5.93598 5.99162 6.08877 6.30103 6.35994 6.53311 6.60161 6.86629 7.03497 7.14991 7.47350 7.62606 7.95434 8.40259 8.84656 9.41669 10.92268 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.024415 B = 0.003942 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.562053 B = 7101.652876 C = 7346.142835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.234 3.766 3 H 0.056 0.944 4 C -0.518 4.518 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.868 3.132 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.982 5.982 13 C 0.094 3.906 14 S 2.771 3.229 15 O -0.976 6.976 16 O -0.992 6.992 17 N -1.136 6.136 18 C 0.125 3.875 19 C -0.049 4.049 20 C -0.199 4.199 21 C -0.004 4.004 22 N -0.367 5.367 23 O 0.097 5.903 24 C -0.053 4.053 25 H 0.025 0.975 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.267 0.733 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.411 0.589 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.191 0.809 38 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.604 3.181 17.896 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.131 3.869 3 H 0.074 0.926 4 C -0.558 4.558 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.694 3.306 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.825 5.825 13 C -0.052 4.052 14 S 2.781 3.219 15 O -0.960 6.960 16 O -0.976 6.976 17 N -0.895 5.895 18 C -0.002 4.002 19 C -0.089 4.089 20 C -0.204 4.204 21 C -0.183 4.183 22 N -0.070 5.070 23 O 0.031 5.969 24 C -0.135 4.135 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.244 0.756 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.208 0.792 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -7.790 2.206 18.752 20.426 hybrid contribution -0.036 1.894 -0.747 2.036 sum -7.825 4.100 18.005 20.056 Atomic orbital electron populations 1.22232 0.98243 1.01229 0.98807 1.19108 0.91202 0.93214 0.83396 0.92605 1.21136 1.44280 0.95974 0.94417 0.89968 1.24999 0.93834 0.98502 0.95288 1.69885 1.44763 1.36116 1.01726 0.87003 0.80145 0.86253 0.77195 1.18943 1.21238 1.18893 1.57886 1.69921 1.19901 1.34785 1.21356 0.98748 0.82251 1.02878 1.02299 0.73797 0.73272 0.72549 1.93610 1.74311 1.56170 1.71892 1.93529 1.69126 1.60510 1.74405 1.56283 1.62671 1.17290 1.53217 1.21165 0.95114 0.93273 0.90601 1.20080 0.98565 0.96189 0.94027 1.21308 0.94390 1.04751 0.99924 1.25066 1.00074 0.97343 0.95844 1.73897 0.94930 1.20592 1.17567 1.84830 1.30673 1.49507 1.31842 1.25922 0.97368 0.95943 0.94235 0.95608 0.92765 0.92833 0.92295 0.94531 0.89637 0.91604 0.75607 0.90381 0.91549 0.89608 0.89522 0.79207 0.76581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.10 37.16 0.34 -2.39 16 2 C 0.23 5.19 2.28 -69.08 -0.16 5.04 16 3 H 0.06 1.31 4.06 -51.93 -0.21 1.10 16 4 C -0.52 -13.80 8.72 -34.44 -0.30 -14.10 16 5 H 0.08 2.33 6.82 -52.49 -0.36 1.97 16 6 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 7 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 8 Si 0.87 21.28 26.99 -169.99 -4.59 16.69 16 9 H -0.26 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.26 -5.99 6.82 56.52 0.39 -5.60 16 12 N -0.98 -18.95 3.12 -115.85 -0.36 -19.31 16 13 C 0.09 1.56 9.81 59.85 0.59 2.15 16 14 S 2.77 50.93 6.14 -107.50 -0.66 50.27 16 15 O -0.98 -21.67 16.70 -57.17 -0.95 -22.62 16 16 O -0.99 -19.80 16.21 -57.17 -0.93 -20.72 16 17 N -1.14 -14.25 6.05 -10.61 -0.06 -14.31 16 18 C 0.13 1.27 6.23 -4.04 -0.03 1.24 16 19 C -0.05 -0.36 5.94 -27.88 -0.17 -0.53 16 20 C -0.20 -1.58 5.58 -104.42 -0.58 -2.16 16 21 C 0.00 -0.04 12.16 -17.06 -0.21 -0.25 16 22 N -0.37 -3.97 12.07 30.35 0.37 -3.60 16 23 O 0.10 0.91 11.20 17.16 0.19 1.10 16 24 C -0.05 -0.37 12.26 29.74 0.36 0.00 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.96 7.84 -51.93 -0.41 0.56 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.53 6.56 -51.92 -0.34 1.19 16 31 H 0.07 1.06 7.02 -51.93 -0.36 0.70 16 32 H 0.41 4.25 8.65 -34.47 -0.30 3.95 16 33 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.22 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -34.57 333.02 -6.37 -40.94 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.92 Total: 0.92 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.25 Total: -8.91 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.71 Total: -62.70 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -1.69 Total: -42.24 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.69 kcal Atomic # 16 Polarization: 50.93 SS G_CDS: -0.66 Total: 50.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.57 -6.37 -40.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907384119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.903 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds